Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46675 * 2 1 4 4 H 1.09004 * 109.47256 * 55.00374 * 3 2 1 5 5 C 1.50707 * 109.46915 * 174.99915 * 3 2 1 6 6 C 1.38281 * 119.97355 * 65.31034 * 5 3 2 7 7 C 1.38243 * 120.11487 * 180.02562 * 6 5 3 8 8 C 1.38169 * 120.05220 * 359.95382 * 7 6 5 9 9 C 1.38706 * 119.94479 * 0.02562 * 8 7 6 10 10 O 1.35899 * 120.05451 * 180.02562 * 9 8 7 11 11 C 1.42896 * 117.00084 * 0.02562 * 10 9 8 12 12 C 1.38126 * 119.96820 * 245.03073 * 5 3 2 13 13 N 1.46497 * 109.47657 * 294.99849 * 3 2 1 14 14 C 1.46503 * 119.99811 * 305.99821 * 13 3 2 15 15 C 1.34776 * 120.00493 * 125.99289 * 13 3 2 16 16 O 1.21696 * 119.99603 * 0.02562 * 15 13 3 17 17 C 1.46373 * 120.00271 * 180.02562 * 15 13 3 18 18 H 1.07995 * 119.99847 * 0.02562 * 17 15 13 19 19 C 1.40047 * 119.99928 * 180.02562 * 17 15 13 20 20 N 1.30680 * 120.00150 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00238 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47031 * 59.99980 * 21 19 17 23 23 H 1.48500 * 109.47465 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47381 * 300.00612 * 21 19 17 25 25 H 1.09006 * 109.46865 * 60.00370 * 1 2 3 26 26 H 1.08996 * 109.46560 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47575 * 299.99889 * 1 2 3 28 28 H 1.08996 * 109.47251 * 240.00503 * 2 1 3 29 29 H 1.08996 * 109.46791 * 119.99695 * 2 1 3 30 30 H 1.08007 * 119.94322 * 359.97181 * 6 5 3 31 31 H 1.07994 * 119.97528 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.02264 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47368 * 59.99008 * 11 10 9 34 34 H 1.09001 * 109.47393 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.46760 * 299.99329 * 11 10 9 36 36 H 1.07999 * 120.03068 * 359.97438 * 12 5 3 37 37 H 1.08997 * 109.46847 * 264.89892 * 14 13 3 38 38 H 1.09003 * 109.47391 * 144.90031 * 14 13 3 39 39 H 1.08996 * 109.47328 * 24.89790 * 14 13 3 40 40 H 0.96995 * 119.99752 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 6 4.3193 0.9135 -0.8890 7 6 5.6973 0.9132 -0.7782 8 6 6.3012 1.4446 0.3451 9 6 5.5237 1.9781 1.3624 10 8 6.1154 2.5018 2.4680 11 6 7.5432 2.4704 2.5162 12 6 4.1410 1.9817 1.2465 13 7 1.6524 2.0976 -1.2518 14 6 2.0024 1.4872 -2.5368 15 6 0.9738 3.2616 -1.2213 16 8 0.6834 3.7688 -0.1539 17 6 0.5862 3.9158 -2.4720 18 1 0.8436 3.4654 -3.4192 19 6 -0.1185 5.1256 -2.4403 20 7 -0.4295 5.6708 -1.2941 21 14 -0.6139 5.9602 -4.0364 22 1 -1.4933 5.0532 -4.8170 23 1 -1.3447 7.2165 -3.7321 24 1 0.6020 6.2738 -4.8291 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8490 0.4975 -1.7679 31 1 6.3022 0.4976 -1.5705 32 1 7.3777 1.4445 0.4310 33 1 7.9476 3.0317 1.6738 34 1 7.8853 2.9189 3.4489 35 1 7.8859 1.4371 2.4623 36 1 3.5336 2.4006 2.0351 37 1 2.9330 1.9205 -2.9033 38 1 1.2060 1.6745 -3.2570 39 1 2.1287 0.4125 -2.4061 40 1 -0.9178 6.5086 -1.2722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291730641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = -69.181648 kcal Electronic energy + Delta-G solvation = -21936.259955 eV Core-core repulsion = 18715.641672 eV Total energy + Delta-G solvation = -3220.618283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29354 -40.07260 -38.37134 -36.49584 -34.58784 -33.63908 -32.15048 -31.08211 -28.74980 -28.27802 -27.54465 -26.24006 -23.39768 -22.98924 -22.34491 -20.49730 -18.61694 -18.47783 -17.79785 -17.11969 -16.96321 -16.64229 -16.28635 -16.06932 -15.82376 -15.13566 -14.70472 -14.48608 -14.38130 -14.18696 -13.61742 -13.41260 -13.30337 -13.24465 -13.06414 -13.01471 -12.70226 -12.52997 -12.29238 -12.16338 -12.06619 -11.96902 -11.82179 -11.73724 -11.55409 -10.89953 -9.89222 -9.66820 -9.12594 -9.03286 -8.25637 -6.81315 0.36107 0.51584 1.39377 1.43121 1.54240 2.24053 2.35761 2.49890 2.72673 3.05325 3.61657 3.76575 3.90015 4.08348 4.16295 4.22172 4.31124 4.38552 4.39158 4.45814 4.52634 4.57315 4.70485 4.72396 4.84075 4.85707 4.99547 5.05967 5.06933 5.10534 5.22048 5.33833 5.37719 5.42488 5.50487 5.68007 5.81591 5.89261 6.17227 6.46110 6.49326 6.90212 7.47095 8.51829 8.71183 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.005147 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.178310 B = 5438.947351 C = 5953.171104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.180 3.820 4 H 0.052 0.948 5 C -0.054 4.054 6 C -0.155 4.155 7 C -0.076 4.076 8 C -0.211 4.211 9 C 0.115 3.885 10 O -0.345 6.345 11 C 0.019 3.981 12 C -0.174 4.174 13 N -0.631 5.631 14 C 0.095 3.905 15 C 0.542 3.458 16 O -0.633 6.633 17 C -0.567 4.567 18 H 0.093 0.907 19 C 0.028 3.972 20 N -0.824 5.824 21 Si 0.994 3.006 22 H -0.252 1.252 23 H -0.277 1.277 24 H -0.255 1.255 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.833 -12.335 -1.401 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C 0.076 3.924 4 H 0.070 0.930 5 C -0.056 4.056 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.229 4.229 9 C 0.070 3.930 10 O -0.259 6.259 11 C -0.075 4.075 12 C -0.194 4.194 13 N -0.366 5.366 14 C -0.048 4.048 15 C 0.348 3.652 16 O -0.520 6.520 17 C -0.604 4.604 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.453 5.453 21 Si 0.813 3.187 22 H -0.175 1.175 23 H -0.202 1.202 24 H -0.179 1.179 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.511 -11.854 -0.559 17.983 hybrid contribution -0.375 0.945 -0.097 1.021 sum 13.137 -10.909 -0.657 17.088 Atomic orbital electron populations 1.21628 0.95865 1.01692 1.00577 1.21792 0.95940 0.93890 1.03519 1.19675 0.89355 0.94496 0.88899 0.92962 1.20152 0.95986 0.95789 0.93634 1.21376 0.94294 1.02504 0.99101 1.21326 0.94230 0.96560 0.97260 1.21501 1.00947 1.05317 0.95165 1.19066 0.91852 0.94726 0.87395 1.86046 1.24376 1.77005 1.38492 1.23351 0.76317 1.03190 1.04657 1.20367 0.92741 1.05998 1.00269 1.47714 1.59600 1.24097 1.05214 1.21704 0.99963 0.97906 0.85181 1.18633 0.77042 0.79323 0.90234 1.90544 1.60914 1.66378 1.34146 1.21493 1.38473 1.07639 0.92751 0.88915 1.26993 0.93337 0.97220 1.01110 1.70213 1.29894 1.16225 1.29003 0.85135 0.79300 0.77445 0.76823 1.17536 1.20205 1.17879 0.94532 0.90084 0.95135 0.89331 0.90140 0.83793 0.82126 0.82608 0.91889 0.86557 0.90978 0.88094 0.93910 0.92064 0.89466 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.80 71.98 0.71 -3.98 16 2 C -0.11 -3.55 5.08 30.60 0.16 -3.40 16 3 C 0.18 7.43 2.34 44.25 0.10 7.53 16 4 H 0.05 2.65 6.66 -2.39 -0.02 2.63 16 5 C -0.05 -1.99 4.96 -19.88 -0.10 -2.09 16 6 C -0.15 -4.52 8.33 22.28 0.19 -4.33 16 7 C -0.08 -1.82 10.04 22.25 0.22 -1.60 16 8 C -0.21 -5.28 9.04 22.37 0.20 -5.08 16 9 C 0.11 3.69 6.69 22.51 0.15 3.84 16 10 O -0.34 -10.31 10.50 -92.42 -0.97 -11.28 16 11 C 0.02 0.33 9.81 113.37 1.11 1.45 16 12 C -0.17 -6.70 9.61 22.37 0.21 -6.48 16 13 N -0.63 -28.88 2.20 -831.88 -1.83 -30.72 16 14 C 0.10 3.32 7.82 127.77 1.00 4.32 16 15 C 0.54 32.12 7.61 86.36 0.66 32.77 16 16 O -0.63 -43.76 14.36 -4.34 -0.06 -43.82 16 17 C -0.57 -32.46 8.73 24.83 0.22 -32.25 16 18 H 0.09 4.70 6.11 -2.91 -0.02 4.69 16 19 C 0.03 1.60 5.50 85.30 0.47 2.07 16 20 N -0.82 -51.78 11.83 21.84 0.26 -51.52 16 21 Si 0.99 41.60 29.56 68.60 2.03 43.63 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 25 H 0.04 1.39 7.75 -2.38 -0.02 1.38 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 2.31 6.01 -2.39 -0.01 2.29 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.14 3.63 4.90 -2.91 -0.01 3.62 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.16 2.75 6.30 -2.91 -0.02 2.73 16 33 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 36 H 0.10 4.26 7.95 -2.91 -0.02 4.23 16 37 H 0.04 1.43 7.49 -2.39 -0.02 1.41 16 38 H 0.06 2.21 6.39 -2.39 -0.02 2.19 16 39 H 0.09 2.32 4.98 -2.39 -0.01 2.30 16 40 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 Total: -1.00 -82.05 323.92 5.76 -76.28 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.05 Total: 24.65 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.30 Total: -7.22 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -1.58 Total: -82.23 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -1.03 Total: -55.11 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -82.05 5.76 -76.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291730641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.102 kcal (2) G-P(sol) polarization free energy of solvation -82.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds