Wall clock time and date at job start Mon Mar 30 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 H 1.08998 * 109.46878 * 304.99746 * 3 2 1 5 5 C 1.52998 * 109.46975 * 64.99892 * 3 2 1 6 6 C 1.53005 * 109.47253 * 184.99988 * 3 2 1 7 7 O 1.42903 * 109.47013 * 174.99928 * 6 3 2 8 8 N 1.41594 * 113.99639 * 180.02562 * 7 6 3 9 9 C 1.34778 * 119.99758 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.47646 * 120.00180 * 179.97438 * 9 8 7 12 12 C 1.40014 * 119.89211 * 359.72782 * 11 9 8 13 13 C 1.36320 * 120.10396 * 179.71781 * 12 11 9 14 14 C 1.40892 * 119.89170 * 0.57877 * 13 12 11 15 15 C 1.41109 * 120.10234 * 179.67584 * 14 13 12 16 16 H 1.08001 * 119.99412 * 204.64046 * 15 14 13 17 17 C 1.40225 * 120.00103 * 24.64195 * 15 14 13 18 18 N 1.30652 * 120.00117 * 17.87539 * 17 15 14 19 19 Si 1.86793 * 119.99896 * 197.87630 * 17 15 14 20 20 H 1.48496 * 109.47513 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47404 * 120.00220 * 19 17 15 22 22 H 1.48507 * 109.47185 * 239.99969 * 19 17 15 23 23 C 1.40889 * 119.79004 * 359.68926 * 14 13 12 24 24 C 1.36315 * 119.89648 * 0.02562 * 23 14 13 25 25 H 1.09004 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47156 * 300.00176 * 1 2 3 27 27 H 1.09006 * 109.46874 * 59.99752 * 1 2 3 28 28 H 1.08998 * 109.47156 * 239.99823 * 2 1 3 29 29 H 1.08998 * 109.47449 * 120.00146 * 2 1 3 30 30 H 1.09000 * 109.47209 * 60.00690 * 5 3 2 31 31 H 1.08999 * 109.47267 * 299.99685 * 5 3 2 32 32 H 1.09004 * 109.47205 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47186 * 295.00277 * 6 3 2 34 34 H 1.09005 * 109.46864 * 54.99862 * 6 3 2 35 35 H 0.97002 * 120.00664 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.94893 * 359.97438 * 12 11 9 37 37 H 1.08001 * 120.05295 * 180.24439 * 13 12 11 38 38 H 0.96997 * 120.00174 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.05195 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.94973 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 8 4.0316 2.7899 -0.2429 8 7 5.4377 2.9030 -0.3659 9 6 6.0081 4.1185 -0.4835 10 8 5.3154 5.1177 -0.4844 11 6 7.4743 4.2366 -0.6112 12 6 8.2704 3.0849 -0.6042 13 6 9.6240 3.1886 -0.7276 14 6 10.2227 4.4581 -0.8501 15 6 11.6241 4.5710 -0.9713 16 1 12.1201 5.4827 -0.6727 17 6 12.3725 3.4995 -1.4792 18 7 11.7803 2.5516 -2.1558 19 14 14.2163 3.4273 -1.1885 20 1 14.6400 4.6126 -0.4006 21 1 14.5514 2.1893 -0.4401 22 1 14.9235 3.4230 -2.4944 23 6 9.4178 5.6144 -0.8510 24 6 8.0646 5.5004 -0.7330 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 2.0700 1.5875 2.1491 31 1 0.5490 2.1253 1.3969 32 1 1.9983 3.1543 1.3072 33 1 4.0030 0.9835 0.7596 34 1 3.8571 0.8799 -1.0113 35 1 5.9904 2.1059 -0.3648 36 1 7.8110 2.1125 -0.5049 37 1 10.2370 2.2994 -0.7260 38 1 12.2980 1.8106 -2.5075 39 1 9.8723 6.5897 -0.9443 40 1 7.4468 6.3862 -0.7332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292168853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:45 Heat of formation + Delta-G solvation = -38.926615 kcal Electronic energy + Delta-G solvation = -20459.905819 eV Core-core repulsion = 17240.599493 eV Total energy + Delta-G solvation = -3219.306326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.02406 -37.93796 -36.97448 -35.61632 -33.92734 -31.99237 -30.28294 -29.54775 -29.36257 -26.78125 -25.76973 -23.42383 -22.16927 -21.00508 -20.42807 -19.59721 -17.93413 -17.55447 -16.45790 -15.93912 -15.52814 -14.94744 -14.75221 -14.41377 -14.04893 -13.76192 -13.69849 -13.26753 -12.98416 -12.78631 -12.35026 -12.23796 -12.11507 -11.94573 -11.91121 -11.44048 -11.32573 -11.12077 -11.01108 -10.97060 -10.81086 -10.72751 -10.56235 -10.08977 -9.62612 -9.40844 -9.05199 -8.41173 -7.78976 -7.60960 -7.09292 -4.65948 2.17205 2.37476 2.87505 2.92429 2.97610 2.98449 3.70327 3.84073 4.47608 4.51841 4.60148 4.63757 5.01248 5.03673 5.21149 5.26515 5.42164 5.44971 5.50890 5.54432 5.71734 5.77144 5.80095 5.82939 5.91485 5.96280 6.13598 6.24329 6.26521 6.71747 6.77246 6.94533 7.05810 7.31186 7.37140 7.55902 7.69709 7.80131 8.00704 8.10037 8.33740 8.57402 8.68734 9.08828 9.82633 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.002986 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.897525 B = 9374.309177 C =10050.994133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.081 0.919 5 C -0.149 4.149 6 C 0.036 3.964 7 O -0.151 6.151 8 N -0.608 5.608 9 C 0.584 3.416 10 O -0.558 6.558 11 C -0.275 4.275 12 C -0.064 4.064 13 C -0.176 4.176 14 C 0.128 3.872 15 C -0.439 4.439 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.770 5.770 19 Si 0.914 3.086 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.237 4.237 24 C -0.018 4.018 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.403 0.597 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.287 0.713 39 H 0.101 0.899 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 -8.203 3.226 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.206 4.206 6 C -0.042 4.042 7 O -0.154 6.154 8 N -0.312 5.312 9 C 0.380 3.620 10 O -0.437 6.437 11 C -0.280 4.280 12 C -0.084 4.084 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.148 4.148 18 N -0.393 5.393 19 Si 0.737 3.263 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.256 4.256 24 C -0.037 4.037 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.935 -7.540 3.085 13.636 hybrid contribution 1.006 -0.978 -0.024 1.403 sum -9.930 -8.518 3.061 13.436 Atomic orbital electron populations 1.21799 0.95309 1.01640 1.02213 1.21506 0.96368 0.95251 1.02317 1.21103 0.92231 0.96998 1.00077 0.90023 1.21868 1.01115 1.01528 0.96085 1.23004 0.95416 0.85019 1.00768 1.90514 1.04029 1.24526 1.96364 1.47731 0.93937 1.09809 1.79678 1.18705 0.88109 0.80473 0.74754 1.90656 1.64216 1.36221 1.52574 1.18615 0.87998 0.95000 1.26433 1.20463 0.94633 0.94732 0.98542 1.20974 0.93113 0.98435 1.07041 1.17809 0.93143 0.91270 0.85294 1.19906 0.92005 1.00216 1.34475 0.89528 1.26126 1.02134 0.94265 0.92289 1.69748 1.39169 1.08665 1.21680 0.86152 0.80930 0.79827 0.79355 1.18002 1.19355 1.19632 1.20714 0.92714 0.97822 1.14374 1.20336 0.94464 0.94957 0.93929 0.92663 0.92275 0.92588 0.91714 0.91664 0.92749 0.92358 0.91610 0.92459 0.92471 0.75637 0.89441 0.86056 0.90198 0.88109 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.08 16 3 C -0.08 -0.87 2.63 -90.62 -0.24 -1.11 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.55 8.84 37.16 0.33 -1.23 16 6 C 0.04 0.44 5.61 37.16 0.21 0.65 16 7 O -0.15 -2.65 10.64 -29.62 -0.32 -2.97 16 8 N -0.61 -11.30 6.34 30.48 0.19 -11.11 16 9 C 0.58 13.20 7.91 -12.42 -0.10 13.10 16 10 O -0.56 -14.37 16.73 -12.86 -0.22 -14.59 16 11 C -0.28 -6.31 5.89 -104.73 -0.62 -6.93 16 12 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 13 C -0.18 -4.22 8.64 -39.27 -0.34 -4.56 16 14 C 0.13 3.20 5.58 -106.80 -0.60 2.60 16 15 C -0.44 -10.66 9.04 -37.75 -0.34 -11.00 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 18 N -0.77 -18.00 10.95 55.56 0.61 -17.39 16 19 Si 0.91 16.86 29.60 -169.99 -5.03 11.83 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.24 -5.63 9.73 -39.27 -0.38 -6.02 16 24 C -0.02 -0.41 9.52 -39.61 -0.38 -0.79 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 32 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 6.28 6.54 -40.82 -0.27 6.01 16 36 H 0.09 1.59 6.37 -52.49 -0.33 1.25 16 37 H 0.12 2.92 6.16 -52.49 -0.32 2.60 16 38 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.10 2.36 7.63 -52.49 -0.40 1.96 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -29.01 335.70 -8.17 -37.18 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.77 Total: 9.26 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.70 Total: -17.28 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.80 Total: -28.49 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.53 Total: -17.55 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.01 -8.17 -37.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292168853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.750 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds