Wall clock time and date at job start Mon Mar 30 2020 02:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 H 1.08998 * 109.46878 * 304.99746 * 3 2 1 5 5 C 1.52998 * 109.46975 * 64.99892 * 3 2 1 6 6 C 1.53005 * 109.47253 * 184.99988 * 3 2 1 7 7 O 1.42903 * 109.47013 * 174.99928 * 6 3 2 8 8 N 1.41594 * 113.99639 * 180.02562 * 7 6 3 9 9 C 1.34778 * 119.99758 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.47646 * 120.00180 * 179.97438 * 9 8 7 12 12 C 1.40014 * 119.89211 * 359.72782 * 11 9 8 13 13 C 1.36320 * 120.10396 * 179.71781 * 12 11 9 14 14 C 1.40892 * 119.89170 * 0.57877 * 13 12 11 15 15 C 1.41109 * 120.10234 * 179.67584 * 14 13 12 16 16 H 1.08001 * 119.99412 * 204.64046 * 15 14 13 17 17 C 1.40225 * 120.00103 * 24.64195 * 15 14 13 18 18 N 1.30652 * 120.00117 * 17.87539 * 17 15 14 19 19 Si 1.86793 * 119.99896 * 197.87630 * 17 15 14 20 20 H 1.48496 * 109.47513 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47404 * 120.00220 * 19 17 15 22 22 H 1.48507 * 109.47185 * 239.99969 * 19 17 15 23 23 C 1.40889 * 119.79004 * 359.68926 * 14 13 12 24 24 C 1.36315 * 119.89648 * 0.02562 * 23 14 13 25 25 H 1.09004 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47156 * 300.00176 * 1 2 3 27 27 H 1.09006 * 109.46874 * 59.99752 * 1 2 3 28 28 H 1.08998 * 109.47156 * 239.99823 * 2 1 3 29 29 H 1.08998 * 109.47449 * 120.00146 * 2 1 3 30 30 H 1.09000 * 109.47209 * 60.00690 * 5 3 2 31 31 H 1.08999 * 109.47267 * 299.99685 * 5 3 2 32 32 H 1.09004 * 109.47205 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47186 * 295.00277 * 6 3 2 34 34 H 1.09005 * 109.46864 * 54.99862 * 6 3 2 35 35 H 0.97002 * 120.00664 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.94893 * 359.97438 * 12 11 9 37 37 H 1.08001 * 120.05295 * 180.24439 * 13 12 11 38 38 H 0.96997 * 120.00174 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.05195 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.94973 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 8 4.0316 2.7899 -0.2429 8 7 5.4377 2.9030 -0.3659 9 6 6.0081 4.1185 -0.4835 10 8 5.3154 5.1177 -0.4844 11 6 7.4743 4.2366 -0.6112 12 6 8.2704 3.0849 -0.6042 13 6 9.6240 3.1886 -0.7276 14 6 10.2227 4.4581 -0.8501 15 6 11.6241 4.5710 -0.9713 16 1 12.1201 5.4827 -0.6727 17 6 12.3725 3.4995 -1.4792 18 7 11.7803 2.5516 -2.1558 19 14 14.2163 3.4273 -1.1885 20 1 14.6400 4.6126 -0.4006 21 1 14.5514 2.1893 -0.4401 22 1 14.9235 3.4230 -2.4944 23 6 9.4178 5.6144 -0.8510 24 6 8.0646 5.5004 -0.7330 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 2.0700 1.5875 2.1491 31 1 0.5490 2.1253 1.3969 32 1 1.9983 3.1543 1.3072 33 1 4.0030 0.9835 0.7596 34 1 3.8571 0.8799 -1.0113 35 1 5.9904 2.1059 -0.3648 36 1 7.8110 2.1125 -0.5049 37 1 10.2370 2.2994 -0.7260 38 1 12.2980 1.8106 -2.5075 39 1 9.8723 6.5897 -0.9443 40 1 7.4468 6.3862 -0.7332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292168853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:44 Heat of formation + Delta-G solvation = -53.569780 kcal Electronic energy + Delta-G solvation = -20460.540794 eV Core-core repulsion = 17240.599493 eV Total energy + Delta-G solvation = -3219.941302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70853 -39.26497 -38.57095 -36.76292 -35.69938 -33.54726 -31.69685 -31.31753 -30.52473 -27.89558 -27.36613 -24.24499 -23.89032 -22.80490 -21.69647 -20.84934 -19.46313 -19.27615 -18.08652 -17.23359 -16.98161 -16.22601 -15.88582 -15.78854 -15.62444 -15.14254 -15.02170 -14.75988 -14.46096 -14.01008 -13.86901 -13.68029 -13.29038 -13.13276 -12.92786 -12.85703 -12.70196 -12.63223 -12.39615 -11.97855 -11.86193 -11.75833 -11.61112 -11.46449 -11.39676 -11.13663 -10.84470 -9.95713 -9.60071 -9.43623 -8.81224 -6.49907 0.38927 0.96999 1.13914 1.39556 1.43270 1.56950 2.08131 2.17806 2.75245 3.48069 3.66692 3.77760 3.81462 4.07083 4.10149 4.27384 4.33414 4.34053 4.43012 4.56895 4.61698 4.70426 4.78788 4.91722 5.01711 5.02349 5.09224 5.12443 5.17813 5.18202 5.26450 5.40193 5.49488 5.56468 5.74583 5.87851 5.88853 5.97532 6.20162 6.49247 6.52801 6.75328 6.86052 7.41777 8.14012 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.002986 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.897525 B = 9374.309177 C =10050.994133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.081 4.081 4 H 0.071 0.929 5 C -0.147 4.147 6 C 0.026 3.974 7 O -0.172 6.172 8 N -0.593 5.593 9 C 0.584 3.416 10 O -0.598 6.598 11 C -0.285 4.285 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.102 3.898 15 C -0.466 4.466 16 H 0.087 0.913 17 C 0.038 3.962 18 N -0.794 5.794 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.260 1.260 22 H -0.264 1.264 23 C -0.250 4.250 24 C -0.028 4.028 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.418 0.582 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.298 0.702 39 H 0.108 0.892 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 -10.327 3.487 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.101 4.101 4 H 0.090 0.910 5 C -0.204 4.204 6 C -0.051 4.051 7 O -0.177 6.177 8 N -0.295 5.295 9 C 0.379 3.621 10 O -0.480 6.480 11 C -0.290 4.290 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.098 3.902 15 C -0.493 4.493 16 H 0.106 0.894 17 C -0.182 4.182 18 N -0.417 5.417 19 Si 0.808 3.192 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.189 1.189 23 C -0.269 4.269 24 C -0.047 4.047 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.820 -9.717 3.345 14.922 hybrid contribution 0.855 -0.390 -0.119 0.947 sum -9.965 -10.107 3.225 14.555 Atomic orbital electron populations 1.21807 0.94566 1.02442 1.02175 1.21482 0.96931 0.93292 1.03122 1.21154 0.90737 0.98686 0.99543 0.91024 1.21856 1.02227 0.99800 0.96559 1.23402 0.96594 0.82838 1.02216 1.90528 1.02516 1.28118 1.96507 1.47310 0.95297 1.09205 1.77726 1.18571 0.87868 0.81062 0.74629 1.90627 1.65008 1.37829 1.54582 1.18786 0.88691 0.95184 1.26379 1.20715 0.93850 0.96042 0.96603 1.21020 0.93996 0.97957 1.08478 1.18169 0.93971 0.92041 0.85983 1.20178 0.92262 1.01320 1.35505 0.89445 1.26942 1.06580 0.93336 0.91332 1.69757 1.41253 1.09146 1.21557 0.85054 0.74884 0.79912 0.79369 1.18046 1.18400 1.18903 1.20851 0.92934 0.98151 1.14958 1.20473 0.94484 0.95636 0.94134 0.91452 0.92146 0.92860 0.91044 0.90729 0.91928 0.90725 0.94559 0.90888 0.90947 0.73856 0.85719 0.86448 0.89038 0.87381 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 71.98 0.70 -1.10 16 2 C -0.11 -1.48 5.40 30.59 0.17 -1.31 16 3 C -0.08 -1.55 2.63 -10.79 -0.03 -1.58 16 4 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.15 -2.90 8.84 71.98 0.64 -2.27 16 6 C 0.03 0.60 5.61 71.98 0.40 1.00 16 7 O -0.17 -5.90 10.64 -21.42 -0.23 -6.13 16 8 N -0.59 -21.36 6.34 -175.73 -1.11 -22.47 16 9 C 0.58 26.33 7.91 86.73 0.69 27.02 16 10 O -0.60 -31.31 16.73 13.37 0.22 -31.08 16 11 C -0.29 -13.10 5.89 -19.93 -0.12 -13.22 16 12 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 13 C -0.20 -9.35 8.64 22.47 0.19 -9.16 16 14 C 0.10 5.15 5.58 -21.28 -0.12 5.04 16 15 C -0.47 -22.83 9.04 23.46 0.21 -22.62 16 16 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 17 C 0.04 1.69 5.14 85.35 0.44 2.13 16 18 N -0.79 -36.67 10.95 21.87 0.24 -36.43 16 19 Si 0.99 33.64 29.60 68.60 2.03 35.67 16 20 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 21 H -0.26 -8.42 7.11 99.48 0.71 -7.72 16 22 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 23 C -0.25 -12.16 9.73 22.47 0.22 -11.94 16 24 C -0.03 -1.34 9.52 22.25 0.21 -1.13 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.69 6.56 -2.39 -0.02 0.68 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.20 6.57 -2.39 -0.02 1.19 16 32 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.42 12.13 6.54 -92.71 -0.61 11.52 16 36 H 0.13 4.24 6.37 -2.91 -0.02 4.22 16 37 H 0.12 5.65 6.16 -2.91 -0.02 5.63 16 38 H 0.30 12.14 8.29 -92.71 -0.77 11.37 16 39 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 Total: -1.00 -62.95 335.70 5.40 -57.55 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.43 Total: 34.11 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.81 Total: -31.21 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.87 Total: -58.90 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: 0.00 Total: -37.22 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -62.95 5.40 -57.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292168853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.984 kcal (2) G-P(sol) polarization free energy of solvation -62.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds