Wall clock time and date at job start Mon Mar 30 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 H 1.08997 * 109.47320 * 54.99659 * 3 2 1 5 5 C 1.53002 * 109.47116 * 294.99650 * 3 2 1 6 6 C 1.53004 * 109.47143 * 174.99862 * 3 2 1 7 7 O 1.42897 * 109.47117 * 184.99775 * 6 3 2 8 8 N 1.41601 * 113.99846 * 179.97438 * 7 6 3 9 9 C 1.34774 * 120.00187 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99683 * 0.02562 * 9 8 7 11 11 C 1.47643 * 120.00580 * 179.97438 * 9 8 7 12 12 C 1.40017 * 119.89069 * 359.73258 * 11 9 8 13 13 C 1.36318 * 120.10288 * 179.71484 * 12 11 9 14 14 C 1.40882 * 119.89335 * 0.57456 * 13 12 11 15 15 C 1.41108 * 120.10226 * 179.67368 * 14 13 12 16 16 H 1.08007 * 119.99822 * 155.07993 * 15 14 13 17 17 C 1.40222 * 120.00207 * 335.08822 * 15 14 13 18 18 N 1.30641 * 119.99914 * 342.19681 * 17 15 14 19 19 Si 1.86803 * 120.00161 * 162.20620 * 17 15 14 20 20 H 1.48507 * 109.47180 * 94.65599 * 19 17 15 21 21 H 1.48493 * 109.46882 * 214.65994 * 19 17 15 22 22 H 1.48501 * 109.46868 * 334.65794 * 19 17 15 23 23 C 1.40890 * 119.79243 * 359.69635 * 14 13 12 24 24 C 1.36314 * 119.89121 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.47143 * 300.00161 * 1 2 3 26 26 H 1.09003 * 109.46831 * 59.99949 * 1 2 3 27 27 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47592 * 240.00128 * 2 1 3 29 29 H 1.09003 * 109.47284 * 119.99768 * 2 1 3 30 30 H 1.08997 * 109.47033 * 300.00184 * 5 3 2 31 31 H 1.08996 * 109.46745 * 60.00156 * 5 3 2 32 32 H 1.09000 * 109.47250 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.47124 * 305.00297 * 6 3 2 34 34 H 1.09003 * 109.46930 * 64.99523 * 6 3 2 35 35 H 0.97002 * 119.99965 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.94472 * 359.97438 * 12 11 9 37 37 H 1.08001 * 120.04939 * 180.24720 * 13 12 11 38 38 H 0.97003 * 120.00321 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.05157 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.94520 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 8 4.0315 2.7899 0.2428 8 7 5.4376 2.9032 0.3659 9 6 6.0079 4.1185 0.4845 10 8 5.3150 5.1177 0.4863 11 6 7.4740 4.2367 0.6134 12 6 8.2692 3.0843 0.6178 13 6 9.6237 3.1887 0.7307 14 6 10.2221 4.4580 0.8553 15 6 11.6232 4.5708 0.9794 16 1 12.1205 5.4810 0.6782 17 6 12.3699 3.5010 1.4934 18 7 11.7754 2.5555 2.1711 19 14 14.2148 3.4280 1.2095 20 1 14.9187 4.0250 2.3729 21 1 14.6353 2.0129 1.0493 22 1 14.5569 4.1882 -0.0194 23 6 9.4172 5.6144 0.8561 24 6 8.0642 5.5004 0.7359 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5875 -2.1491 31 1 0.5490 2.1252 -1.3970 32 1 1.9989 3.1541 -1.3076 33 1 3.8571 0.8800 1.0114 34 1 4.0029 0.9836 -0.7596 35 1 5.9902 2.1060 0.3656 36 1 7.8090 2.1114 0.5273 37 1 10.2366 2.2994 0.7300 38 1 12.2920 1.8156 2.5271 39 1 9.8716 6.5895 0.9517 40 1 7.4463 6.3862 0.7368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292168856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:48 Heat of formation + Delta-G solvation = -38.894624 kcal Electronic energy + Delta-G solvation = -20459.906152 eV Core-core repulsion = 17240.601213 eV Total energy + Delta-G solvation = -3219.304939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.02431 -37.93827 -36.97443 -35.61595 -33.92632 -31.99271 -30.28274 -29.54886 -29.36230 -26.78097 -25.76829 -23.42352 -22.16861 -21.00501 -20.42813 -19.59739 -17.93396 -17.55179 -16.45811 -15.93869 -15.52587 -14.94773 -14.75315 -14.41505 -14.04792 -13.76206 -13.69979 -13.26738 -12.98185 -12.78200 -12.35020 -12.23810 -12.11394 -11.94921 -11.91105 -11.44242 -11.30467 -11.12533 -11.02282 -10.98015 -10.81050 -10.71872 -10.56002 -10.11076 -9.62176 -9.40412 -9.05138 -8.41201 -7.78791 -7.60771 -7.09114 -4.65825 2.17607 2.37405 2.87535 2.91927 2.97739 2.98460 3.70197 3.84281 4.47614 4.52039 4.60136 4.63779 5.01245 5.03676 5.21157 5.26519 5.42144 5.44965 5.50955 5.54417 5.71743 5.77155 5.80090 5.82916 5.91516 5.96299 6.13591 6.24349 6.26490 6.71735 6.77288 6.94476 7.05826 7.31155 7.37094 7.55902 7.69634 7.79967 8.00798 8.10017 8.33614 8.57382 8.68760 9.08796 9.82928 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032914 B = 0.002986 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.487433 B = 9374.913171 C =10051.451541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.081 0.919 5 C -0.149 4.149 6 C 0.036 3.964 7 O -0.151 6.151 8 N -0.608 5.608 9 C 0.584 3.416 10 O -0.558 6.558 11 C -0.275 4.275 12 C -0.064 4.064 13 C -0.176 4.176 14 C 0.129 3.871 15 C -0.439 4.439 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.770 5.770 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.237 4.237 24 C -0.018 4.018 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.403 0.597 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.287 0.713 39 H 0.101 0.899 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -8.206 -3.222 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.206 4.206 6 C -0.042 4.042 7 O -0.154 6.154 8 N -0.312 5.312 9 C 0.380 3.620 10 O -0.437 6.437 11 C -0.280 4.280 12 C -0.083 4.083 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.148 4.148 18 N -0.393 5.393 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.180 1.180 23 C -0.256 4.256 24 C -0.037 4.037 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.935 -7.547 -3.080 13.639 hybrid contribution 1.011 -0.971 0.039 1.402 sum -9.925 -8.518 -3.041 13.428 Atomic orbital electron populations 1.21798 0.95309 1.01640 1.02214 1.21508 0.96368 0.95249 1.02317 1.21105 0.92230 0.96999 1.00078 0.90023 1.21868 1.01112 1.01531 0.96083 1.23003 0.95416 0.85019 1.00768 1.90513 1.04030 1.24527 1.96363 1.47732 0.93940 1.09808 1.79672 1.18704 0.88105 0.80475 0.74757 1.90656 1.64201 1.36229 1.52580 1.18615 0.88025 0.94984 1.26420 1.20461 0.94619 0.94724 0.98536 1.20968 0.93086 0.98421 1.07093 1.17799 0.93128 0.91268 0.85267 1.19870 0.92041 1.00343 1.34407 0.89573 1.26119 1.02109 0.94238 0.92298 1.69738 1.39222 1.08791 1.21556 0.86198 0.80990 0.78845 0.80288 1.19184 1.19715 1.18033 1.20717 0.92717 0.97834 1.14352 1.20334 0.94466 0.94964 0.93919 0.92588 0.92274 0.92664 0.91662 0.91713 0.92755 0.92354 0.91608 0.92473 0.92459 0.75637 0.89439 0.86093 0.90159 0.88106 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.08 16 3 C -0.08 -0.87 2.63 -90.62 -0.24 -1.11 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.55 8.85 37.16 0.33 -1.23 16 6 C 0.04 0.44 5.61 37.16 0.21 0.65 16 7 O -0.15 -2.65 10.64 -29.62 -0.32 -2.97 16 8 N -0.61 -11.30 6.34 30.48 0.19 -11.10 16 9 C 0.58 13.20 7.91 -12.42 -0.10 13.10 16 10 O -0.56 -14.37 16.73 -12.86 -0.22 -14.59 16 11 C -0.28 -6.31 5.89 -104.73 -0.62 -6.93 16 12 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 14 C 0.13 3.21 5.57 -106.80 -0.60 2.62 16 15 C -0.44 -10.68 9.04 -37.75 -0.34 -11.02 16 16 H 0.09 1.99 7.91 -52.48 -0.42 1.58 16 17 C 0.07 1.68 5.13 -17.31 -0.09 1.59 16 18 N -0.77 -18.02 10.97 55.56 0.61 -17.41 16 19 Si 0.91 16.86 29.60 -169.99 -5.03 11.83 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 24 C -0.02 -0.41 9.52 -39.61 -0.38 -0.79 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.06 0.84 7.82 -51.93 -0.41 0.44 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 6.28 6.54 -40.82 -0.27 6.01 16 36 H 0.09 1.59 6.37 -52.48 -0.33 1.25 16 37 H 0.12 2.91 6.17 -52.49 -0.32 2.59 16 38 H 0.29 6.02 8.29 -40.82 -0.34 5.69 16 39 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.10 2.36 7.63 -52.49 -0.40 1.95 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -29.01 335.72 -8.17 -37.17 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.77 Total: 9.28 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.70 Total: -17.26 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: 0.80 Total: -28.52 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.53 Total: -17.55 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.01 -8.17 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292168856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.721 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds