Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 H 1.08997 * 109.47320 * 54.99659 * 3 2 1 5 5 C 1.53002 * 109.47116 * 294.99650 * 3 2 1 6 6 C 1.53004 * 109.47143 * 174.99862 * 3 2 1 7 7 O 1.42897 * 109.47117 * 184.99775 * 6 3 2 8 8 N 1.41601 * 113.99846 * 179.97438 * 7 6 3 9 9 C 1.34774 * 120.00187 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99683 * 0.02562 * 9 8 7 11 11 C 1.47643 * 120.00580 * 179.97438 * 9 8 7 12 12 C 1.40017 * 119.89069 * 359.73258 * 11 9 8 13 13 C 1.36318 * 120.10288 * 179.71484 * 12 11 9 14 14 C 1.40882 * 119.89335 * 0.57456 * 13 12 11 15 15 C 1.41108 * 120.10226 * 179.67368 * 14 13 12 16 16 H 1.08007 * 119.99822 * 155.07993 * 15 14 13 17 17 C 1.40222 * 120.00207 * 335.08822 * 15 14 13 18 18 N 1.30641 * 119.99914 * 342.19681 * 17 15 14 19 19 Si 1.86803 * 120.00161 * 162.20620 * 17 15 14 20 20 H 1.48507 * 109.47180 * 94.65599 * 19 17 15 21 21 H 1.48493 * 109.46882 * 214.65994 * 19 17 15 22 22 H 1.48501 * 109.46868 * 334.65794 * 19 17 15 23 23 C 1.40890 * 119.79243 * 359.69635 * 14 13 12 24 24 C 1.36314 * 119.89121 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.47143 * 300.00161 * 1 2 3 26 26 H 1.09003 * 109.46831 * 59.99949 * 1 2 3 27 27 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47592 * 240.00128 * 2 1 3 29 29 H 1.09003 * 109.47284 * 119.99768 * 2 1 3 30 30 H 1.08997 * 109.47033 * 300.00184 * 5 3 2 31 31 H 1.08996 * 109.46745 * 60.00156 * 5 3 2 32 32 H 1.09000 * 109.47250 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.47124 * 305.00297 * 6 3 2 34 34 H 1.09003 * 109.46930 * 64.99523 * 6 3 2 35 35 H 0.97002 * 119.99965 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.94472 * 359.97438 * 12 11 9 37 37 H 1.08001 * 120.04939 * 180.24720 * 13 12 11 38 38 H 0.97003 * 120.00321 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.05157 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.94520 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 8 4.0315 2.7899 0.2428 8 7 5.4376 2.9032 0.3659 9 6 6.0079 4.1185 0.4845 10 8 5.3150 5.1177 0.4863 11 6 7.4740 4.2367 0.6134 12 6 8.2692 3.0843 0.6178 13 6 9.6237 3.1887 0.7307 14 6 10.2221 4.4580 0.8553 15 6 11.6232 4.5708 0.9794 16 1 12.1205 5.4810 0.6782 17 6 12.3699 3.5010 1.4934 18 7 11.7754 2.5555 2.1711 19 14 14.2148 3.4280 1.2095 20 1 14.9187 4.0250 2.3729 21 1 14.6353 2.0129 1.0493 22 1 14.5569 4.1882 -0.0194 23 6 9.4172 5.6144 0.8561 24 6 8.0642 5.5004 0.7359 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5875 -2.1491 31 1 0.5490 2.1252 -1.3970 32 1 1.9989 3.1541 -1.3076 33 1 3.8571 0.8800 1.0114 34 1 4.0029 0.9836 -0.7596 35 1 5.9902 2.1060 0.3656 36 1 7.8090 2.1114 0.5273 37 1 10.2366 2.2994 0.7300 38 1 12.2920 1.8156 2.5271 39 1 9.8716 6.5895 0.9517 40 1 7.4463 6.3862 0.7368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292168856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = -53.537159 kcal Electronic energy + Delta-G solvation = -20460.541100 eV Core-core repulsion = 17240.601213 eV Total energy + Delta-G solvation = -3219.939887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70888 -39.26524 -38.57094 -36.76245 -35.69844 -33.54764 -31.69682 -31.31846 -30.52464 -27.89461 -27.36522 -24.24462 -23.88980 -22.80494 -21.69662 -20.84949 -19.46205 -19.27419 -18.08674 -17.23036 -16.98199 -16.22774 -15.88539 -15.78859 -15.62413 -15.14777 -15.01844 -14.75858 -14.45689 -14.00938 -13.86806 -13.68189 -13.29311 -13.13353 -12.92821 -12.84600 -12.70696 -12.63799 -12.38170 -11.97840 -11.86631 -11.77829 -11.61085 -11.46413 -11.39702 -11.12996 -10.84393 -9.95704 -9.59981 -9.43398 -8.81086 -6.49783 0.39131 0.96927 1.13913 1.39634 1.43507 1.56409 2.07978 2.17995 2.75528 3.48077 3.66746 3.77777 3.81461 4.07075 4.10121 4.27382 4.33413 4.34047 4.42976 4.56904 4.61688 4.70420 4.78815 4.91684 5.01691 5.02368 5.09245 5.12379 5.17819 5.18203 5.26414 5.40219 5.49484 5.56489 5.74573 5.87827 5.88777 5.97467 6.20250 6.49209 6.52706 6.75323 6.86064 7.41740 8.14159 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032914 B = 0.002986 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.487433 B = 9374.913171 C =10051.451541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.081 4.081 4 H 0.071 0.929 5 C -0.147 4.147 6 C 0.026 3.974 7 O -0.172 6.172 8 N -0.593 5.593 9 C 0.584 3.416 10 O -0.598 6.598 11 C -0.285 4.285 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.102 3.898 15 C -0.467 4.467 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.794 5.794 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.257 1.257 23 C -0.249 4.249 24 C -0.028 4.028 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.418 0.582 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.298 0.702 39 H 0.108 0.892 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 -10.325 -3.469 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.101 4.101 4 H 0.090 0.910 5 C -0.204 4.204 6 C -0.051 4.051 7 O -0.177 6.177 8 N -0.295 5.295 9 C 0.379 3.621 10 O -0.480 6.480 11 C -0.290 4.290 12 C -0.072 4.072 13 C -0.214 4.214 14 C 0.099 3.901 15 C -0.494 4.494 16 H 0.106 0.894 17 C -0.182 4.182 18 N -0.418 5.418 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.181 1.181 23 C -0.269 4.269 24 C -0.047 4.047 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.817 -9.719 -3.327 14.918 hybrid contribution 0.858 -0.383 0.130 0.948 sum -9.960 -10.102 -3.197 14.542 Atomic orbital electron populations 1.21807 0.94566 1.02442 1.02175 1.21484 0.96931 0.93291 1.03121 1.21155 0.90736 0.98685 0.99544 0.91024 1.21856 1.02225 0.99805 0.96557 1.23401 0.96596 0.82839 1.02216 1.90528 1.02516 1.28117 1.96505 1.47311 0.95301 1.09204 1.77719 1.18569 0.87863 0.81063 0.74632 1.90628 1.64994 1.37837 1.54588 1.18785 0.88716 0.95166 1.26362 1.20713 0.93841 0.96039 0.96597 1.21014 0.93967 0.97944 1.08524 1.18160 0.93961 0.92040 0.85959 1.20155 0.92305 1.01479 1.35421 0.89415 1.26937 1.06570 0.93309 0.91334 1.69750 1.41295 1.09263 1.21449 0.85099 0.74924 0.79237 0.80037 1.18647 1.18555 1.18063 1.20854 0.92936 0.98166 1.14930 1.20472 0.94487 0.95642 0.94127 0.92860 0.92145 0.91453 0.90727 0.91043 0.91934 0.90720 0.94557 0.90948 0.90889 0.73857 0.85723 0.86485 0.89033 0.87367 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 71.98 0.70 -1.10 16 2 C -0.11 -1.48 5.40 30.59 0.17 -1.31 16 3 C -0.08 -1.55 2.63 -10.79 -0.03 -1.58 16 4 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.15 -2.90 8.85 71.98 0.64 -2.27 16 6 C 0.03 0.59 5.61 71.98 0.40 1.00 16 7 O -0.17 -5.90 10.64 -21.43 -0.23 -6.13 16 8 N -0.59 -21.35 6.34 -175.74 -1.11 -22.47 16 9 C 0.58 26.33 7.91 86.73 0.69 27.02 16 10 O -0.60 -31.31 16.73 13.36 0.22 -31.08 16 11 C -0.29 -13.10 5.89 -19.93 -0.12 -13.22 16 12 C -0.05 -2.26 9.47 22.25 0.21 -2.05 16 13 C -0.20 -9.36 8.63 22.47 0.19 -9.16 16 14 C 0.10 5.18 5.57 -21.28 -0.12 5.06 16 15 C -0.47 -22.88 9.04 23.46 0.21 -22.67 16 16 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 17 C 0.04 1.71 5.13 85.35 0.44 2.15 16 18 N -0.79 -36.73 10.97 21.87 0.24 -36.49 16 19 Si 0.99 33.62 29.60 68.60 2.03 35.65 16 20 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 21 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 22 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 23 C -0.25 -12.16 9.73 22.47 0.22 -11.94 16 24 C -0.03 -1.34 9.52 22.25 0.21 -1.13 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.69 6.56 -2.39 -0.02 0.68 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.20 6.56 -2.39 -0.02 1.19 16 32 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.42 12.13 6.54 -92.71 -0.61 11.52 16 36 H 0.13 4.24 6.37 -2.91 -0.02 4.22 16 37 H 0.12 5.63 6.17 -2.91 -0.02 5.62 16 38 H 0.30 12.19 8.29 -92.71 -0.77 11.42 16 39 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 Total: -1.00 -62.95 335.72 5.40 -57.55 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.43 Total: 34.17 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.81 Total: -31.20 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.87 Total: -58.95 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: 0.00 Total: -37.21 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Total: -62.95 5.40 -57.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292168856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.016 kcal (2) G-P(sol) polarization free energy of solvation -62.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds