Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 H 1.09006 * 109.46954 * 304.99529 * 3 2 1 5 5 C 1.52999 * 109.47227 * 64.99604 * 3 2 1 6 6 C 1.52995 * 109.47480 * 185.00028 * 3 2 1 7 7 O 1.42898 * 109.47493 * 174.99763 * 6 3 2 8 8 N 1.41601 * 114.00089 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99903 * 179.72248 * 8 7 6 10 10 O 1.21553 * 119.99938 * 0.27875 * 9 8 7 11 11 C 1.47886 * 119.99870 * 180.27683 * 9 8 7 12 12 C 1.39915 * 120.02737 * 359.72610 * 11 9 8 13 13 C 1.38330 * 120.36096 * 179.74297 * 12 11 9 14 14 C 1.37750 * 120.40970 * 0.55850 * 13 12 11 15 15 C 1.40752 * 120.03786 * 359.69928 * 14 13 12 16 16 C 1.41444 * 120.17652 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99839 * 24.43828 * 16 15 14 18 18 C 1.39937 * 120.00013 * 204.43603 * 16 15 14 19 19 N 1.30832 * 119.99820 * 17.88059 * 18 16 15 20 20 Si 1.86798 * 120.00242 * 197.87764 * 18 16 15 21 21 H 1.48500 * 109.46851 * 60.00364 * 20 18 16 22 22 H 1.48498 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47296 * 300.00692 * 20 18 16 24 24 C 1.38996 * 120.02356 * 180.02562 * 11 9 8 25 25 H 1.08994 * 109.47039 * 300.00186 * 1 2 3 26 26 H 1.09001 * 109.46436 * 60.00504 * 1 2 3 27 27 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47655 * 239.99810 * 2 1 3 29 29 H 1.09004 * 109.47145 * 119.99669 * 2 1 3 30 30 H 1.08997 * 109.46829 * 60.00486 * 5 3 2 31 31 H 1.09007 * 109.47090 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47392 * 299.99923 * 5 3 2 33 33 H 1.08999 * 109.47223 * 54.99666 * 6 3 2 34 34 H 1.09003 * 109.46854 * 294.99735 * 6 3 2 35 35 H 0.96996 * 120.00218 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.82016 * 0.02562 * 12 11 9 37 37 H 1.07995 * 119.79731 * 180.27936 * 13 12 11 38 38 H 1.07991 * 119.98345 * 179.72246 * 14 13 12 39 39 H 0.96994 * 119.99746 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.20269 * 359.95626 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 8 4.0315 2.7899 -0.2429 8 7 5.4377 2.9032 -0.3648 9 6 6.0077 4.1183 -0.4885 10 8 5.3150 5.1172 -0.4903 11 6 7.4757 4.2363 -0.6219 12 6 8.2741 3.0873 -0.6141 13 6 9.6475 3.1893 -0.7438 14 6 10.2462 4.4234 -0.8706 15 6 9.4599 5.5908 -0.8751 16 6 10.0715 6.8594 -1.0057 17 1 11.0364 6.9472 -1.4829 18 6 9.4263 8.0009 -0.5166 19 7 8.4555 7.8818 0.3523 20 14 9.9513 9.6945 -1.1043 21 1 9.7736 9.7848 -2.5759 22 1 9.1175 10.7290 -0.4412 23 1 11.3796 9.9160 -0.7637 24 6 8.0641 5.4892 -0.7489 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8935 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5876 2.1491 31 1 1.9982 3.1544 1.3071 32 1 0.5490 2.1253 1.3968 33 1 3.8571 0.8800 -1.0113 34 1 4.0029 0.9837 0.7597 35 1 5.9904 2.1062 -0.3637 36 1 7.8151 2.1151 -0.5108 37 1 10.2546 2.2961 -0.7411 38 1 11.3194 4.4952 -0.9669 39 1 8.0086 8.6730 0.6915 40 1 7.4521 6.3791 -0.7513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293720038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = -34.419868 kcal Electronic energy + Delta-G solvation = -20670.236730 eV Core-core repulsion = 17451.125831 eV Total energy + Delta-G solvation = -3219.110899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.11651 -37.95703 -36.90668 -35.65907 -33.80762 -32.00884 -30.27626 -29.53711 -29.26949 -26.73849 -25.32791 -23.50168 -22.65684 -21.00351 -20.42537 -19.51044 -18.06548 -17.50347 -16.02987 -15.90492 -15.28377 -14.97296 -14.85997 -14.54886 -14.23965 -13.79505 -13.72397 -13.25301 -13.00812 -12.72256 -12.55224 -12.33218 -12.15910 -11.93147 -11.68829 -11.23358 -11.13025 -11.07692 -11.02246 -10.84348 -10.78048 -10.62702 -10.52733 -10.06434 -9.75413 -9.23975 -9.11000 -8.47965 -7.69797 -7.57852 -6.83372 -4.45276 2.15696 2.27768 2.78440 3.06733 3.08687 3.14843 3.84400 3.90426 4.43846 4.57985 4.60257 4.61809 4.98998 4.99595 5.18416 5.24125 5.40408 5.41695 5.52104 5.55343 5.57285 5.71043 5.76354 5.79873 5.91264 6.01226 6.12111 6.20031 6.24703 6.65827 6.91338 6.94969 7.16061 7.21634 7.31533 7.61291 7.67273 7.86117 7.98381 8.13242 8.45111 8.76090 8.78176 8.95920 10.11278 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028765 B = 0.003356 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.188243 B = 8342.272387 C = 9139.853694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.082 0.918 5 C -0.150 4.150 6 C 0.036 3.964 7 O -0.149 6.149 8 N -0.603 5.603 9 C 0.576 3.424 10 O -0.527 6.527 11 C -0.115 4.115 12 C -0.224 4.224 13 C -0.094 4.094 14 C -0.212 4.212 15 C 0.100 3.900 16 C -0.458 4.458 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.781 5.781 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.287 0.713 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 -12.484 0.173 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.207 4.207 6 C -0.042 4.042 7 O -0.152 6.152 8 N -0.308 5.308 9 C 0.367 3.633 10 O -0.402 6.402 11 C -0.119 4.119 12 C -0.244 4.244 13 C -0.112 4.112 14 C -0.232 4.232 15 C 0.098 3.902 16 C -0.486 4.486 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.404 5.404 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.110 4.110 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.025 -11.427 0.342 15.205 hybrid contribution 0.395 -0.070 -0.087 0.410 sum -9.630 -11.497 0.256 15.000 Atomic orbital electron populations 1.21799 0.95284 1.01646 1.02257 1.21505 0.96400 0.95210 1.02280 1.21109 0.92132 0.97033 1.00160 0.89978 1.21875 1.01174 1.01592 0.96034 1.23020 0.95513 0.84892 1.00785 1.90538 1.03636 1.24689 1.96358 1.47734 0.94240 1.09762 1.79030 1.18958 0.88372 0.80754 0.75237 1.90721 1.63818 1.36059 1.49636 1.19206 0.87992 0.95739 1.08934 1.20314 0.94063 0.94806 1.15193 1.20423 0.93835 0.96460 1.00509 1.21105 0.98021 0.92487 1.11537 1.17582 0.90977 0.92849 0.88835 1.19578 1.04881 0.90625 1.33525 0.89937 1.25994 0.93914 1.01973 0.92848 1.69774 1.18055 1.32964 1.19655 0.86296 0.79499 0.80321 0.80268 1.18661 1.20172 1.18926 1.21631 0.95026 0.95017 0.99317 0.92249 0.92568 0.92659 0.91738 0.91661 0.92723 0.91542 0.92316 0.92437 0.92371 0.75434 0.89354 0.88726 0.88447 0.90212 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.12 -0.90 5.40 -26.73 -0.14 -1.05 16 3 C -0.08 -0.87 2.63 -90.62 -0.24 -1.10 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 6 C 0.04 0.43 5.61 37.16 0.21 0.63 16 7 O -0.15 -2.60 10.64 -29.62 -0.32 -2.91 16 8 N -0.60 -11.09 6.34 30.54 0.19 -10.90 16 9 C 0.58 13.35 7.92 -12.31 -0.10 13.25 16 10 O -0.53 -14.25 16.74 -12.83 -0.21 -14.47 16 11 C -0.11 -2.73 5.87 -105.04 -0.62 -3.35 16 12 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 13 C -0.09 -1.96 10.01 -39.73 -0.40 -2.35 16 14 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 15 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 16 C -0.46 -11.85 9.05 -37.73 -0.34 -12.20 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.78 -20.61 10.95 55.55 0.61 -20.00 16 20 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.09 -2.39 8.24 -38.44 -0.32 -2.71 16 25 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.87 7.82 -51.92 -0.41 0.46 16 32 H 0.06 0.53 6.56 -51.93 -0.34 0.18 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 6.04 6.56 -40.82 -0.27 5.77 16 36 H 0.09 1.48 6.38 -52.48 -0.33 1.14 16 37 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 40 H 0.14 3.92 5.74 -52.49 -0.30 3.61 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -30.42 335.95 -8.16 -38.58 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.77 Total: 8.38 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.69 Total: -17.36 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.80 Total: -30.90 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.53 Total: -17.38 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.42 -8.16 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293720038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.162 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds