Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 H 1.09006 * 109.46954 * 304.99529 * 3 2 1 5 5 C 1.52999 * 109.47227 * 64.99604 * 3 2 1 6 6 C 1.52995 * 109.47480 * 185.00028 * 3 2 1 7 7 O 1.42898 * 109.47493 * 174.99763 * 6 3 2 8 8 N 1.41601 * 114.00089 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99903 * 179.72248 * 8 7 6 10 10 O 1.21553 * 119.99938 * 0.27875 * 9 8 7 11 11 C 1.47886 * 119.99870 * 180.27683 * 9 8 7 12 12 C 1.39915 * 120.02737 * 359.72610 * 11 9 8 13 13 C 1.38330 * 120.36096 * 179.74297 * 12 11 9 14 14 C 1.37750 * 120.40970 * 0.55850 * 13 12 11 15 15 C 1.40752 * 120.03786 * 359.69928 * 14 13 12 16 16 C 1.41444 * 120.17652 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99839 * 24.43828 * 16 15 14 18 18 C 1.39937 * 120.00013 * 204.43603 * 16 15 14 19 19 N 1.30832 * 119.99820 * 17.88059 * 18 16 15 20 20 Si 1.86798 * 120.00242 * 197.87764 * 18 16 15 21 21 H 1.48500 * 109.46851 * 60.00364 * 20 18 16 22 22 H 1.48498 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47296 * 300.00692 * 20 18 16 24 24 C 1.38996 * 120.02356 * 180.02562 * 11 9 8 25 25 H 1.08994 * 109.47039 * 300.00186 * 1 2 3 26 26 H 1.09001 * 109.46436 * 60.00504 * 1 2 3 27 27 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47655 * 239.99810 * 2 1 3 29 29 H 1.09004 * 109.47145 * 119.99669 * 2 1 3 30 30 H 1.08997 * 109.46829 * 60.00486 * 5 3 2 31 31 H 1.09007 * 109.47090 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47392 * 299.99923 * 5 3 2 33 33 H 1.08999 * 109.47223 * 54.99666 * 6 3 2 34 34 H 1.09003 * 109.46854 * 294.99735 * 6 3 2 35 35 H 0.96996 * 120.00218 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.82016 * 0.02562 * 12 11 9 37 37 H 1.07995 * 119.79731 * 180.27936 * 13 12 11 38 38 H 1.07991 * 119.98345 * 179.72246 * 14 13 12 39 39 H 0.96994 * 119.99746 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.20269 * 359.95626 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 8 4.0315 2.7899 -0.2429 8 7 5.4377 2.9032 -0.3648 9 6 6.0077 4.1183 -0.4885 10 8 5.3150 5.1172 -0.4903 11 6 7.4757 4.2363 -0.6219 12 6 8.2741 3.0873 -0.6141 13 6 9.6475 3.1893 -0.7438 14 6 10.2462 4.4234 -0.8706 15 6 9.4599 5.5908 -0.8751 16 6 10.0715 6.8594 -1.0057 17 1 11.0364 6.9472 -1.4829 18 6 9.4263 8.0009 -0.5166 19 7 8.4555 7.8818 0.3523 20 14 9.9513 9.6945 -1.1043 21 1 9.7736 9.7848 -2.5759 22 1 9.1175 10.7290 -0.4412 23 1 11.3796 9.9160 -0.7637 24 6 8.0641 5.4892 -0.7489 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8935 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5876 2.1491 31 1 1.9982 3.1544 1.3071 32 1 0.5490 2.1253 1.3968 33 1 3.8571 0.8800 -1.0113 34 1 4.0029 0.9837 0.7597 35 1 5.9904 2.1062 -0.3637 36 1 7.8151 2.1151 -0.5108 37 1 10.2546 2.2961 -0.7411 38 1 11.3194 4.4952 -0.9669 39 1 8.0086 8.6730 0.6915 40 1 7.4521 6.3791 -0.7513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293720038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = -51.467071 kcal Electronic energy + Delta-G solvation = -20670.975952 eV Core-core repulsion = 17451.125831 eV Total energy + Delta-G solvation = -3219.850121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83324 -39.24911 -38.56301 -36.80971 -35.64002 -33.60083 -31.66629 -31.29007 -30.48054 -27.70563 -27.16570 -24.58340 -24.12003 -22.81436 -21.62466 -20.84412 -19.66933 -19.11213 -17.72116 -17.10992 -16.95869 -16.51693 -16.04047 -15.85213 -15.67403 -15.19633 -15.04746 -14.79857 -14.43813 -14.29132 -13.91405 -13.51657 -13.17753 -12.98670 -12.92857 -12.81248 -12.68720 -12.54552 -12.21749 -12.01714 -11.94512 -11.83725 -11.61725 -11.53793 -11.46792 -11.06990 -10.92763 -10.03640 -9.50766 -9.41092 -8.67287 -6.38831 0.31960 0.85246 0.99842 1.37265 1.48776 1.51555 2.03989 2.19499 2.76439 3.41740 3.67605 3.75833 3.79351 3.87275 4.07532 4.31925 4.33882 4.40735 4.54110 4.57118 4.60613 4.70077 4.78018 4.88385 5.01750 5.06695 5.08678 5.15533 5.17309 5.17864 5.29472 5.39649 5.47829 5.49269 5.73417 5.81897 5.88600 6.04018 6.24656 6.38436 6.59817 6.86612 6.92672 7.28415 8.29315 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028765 B = 0.003356 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.188243 B = 8342.272387 C = 9139.853694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.149 4.149 6 C 0.026 3.974 7 O -0.173 6.173 8 N -0.581 5.581 9 C 0.572 3.428 10 O -0.580 6.580 11 C -0.125 4.125 12 C -0.199 4.199 13 C -0.091 4.091 14 C -0.213 4.213 15 C 0.069 3.931 16 C -0.495 4.495 17 H 0.088 0.912 18 C 0.028 3.972 19 N -0.825 5.825 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.250 1.250 24 C -0.130 4.130 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.423 0.577 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.287 0.713 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 -15.724 -0.002 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.102 4.102 4 H 0.089 0.911 5 C -0.206 4.206 6 C -0.051 4.051 7 O -0.178 6.178 8 N -0.284 5.284 9 C 0.363 3.637 10 O -0.460 6.460 11 C -0.129 4.129 12 C -0.219 4.219 13 C -0.109 4.109 14 C -0.232 4.232 15 C 0.066 3.934 16 C -0.524 4.524 17 H 0.106 0.894 18 C -0.187 4.187 19 N -0.450 5.450 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.174 1.174 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.268 0.732 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.655 -14.755 0.168 17.634 hybrid contribution 0.193 0.622 -0.016 0.651 sum -9.463 -14.133 0.152 17.009 Atomic orbital electron populations 1.21813 0.94730 1.02456 1.02093 1.21477 0.96798 0.93119 1.03277 1.21165 0.90896 0.98790 0.99355 0.91105 1.21870 1.02220 0.99732 0.96788 1.23444 0.96470 0.82597 1.02586 1.90571 1.02124 1.28561 1.96501 1.47220 0.95631 1.08936 1.76632 1.18899 0.88258 0.81418 0.75082 1.90690 1.64870 1.38187 1.52227 1.19413 0.88880 0.95954 1.08658 1.20857 0.94085 0.95657 1.11283 1.20939 0.94312 0.97159 0.98469 1.21449 0.98804 0.92725 1.10270 1.17927 0.91202 0.94316 0.89932 1.19869 1.05706 0.91636 1.35152 0.89409 1.26890 0.93634 1.05818 0.92356 1.69883 1.19832 1.33846 1.21456 0.85232 0.79632 0.75306 0.79488 1.18481 1.19854 1.17416 1.21430 0.95337 0.95268 1.02986 0.92321 0.92915 0.91360 0.90754 0.90618 0.91811 0.94838 0.90809 0.90344 0.90593 0.73188 0.84368 0.83828 0.86927 0.90253 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 71.98 0.70 -1.06 16 2 C -0.11 -1.36 5.40 30.59 0.17 -1.20 16 3 C -0.08 -1.53 2.63 -10.80 -0.03 -1.56 16 4 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 5 C -0.15 -3.01 8.84 71.98 0.64 -2.37 16 6 C 0.03 0.55 5.61 71.98 0.40 0.95 16 7 O -0.17 -5.89 10.64 -21.43 -0.23 -6.11 16 8 N -0.58 -20.45 6.34 -175.57 -1.11 -21.57 16 9 C 0.57 26.88 7.92 86.80 0.69 27.56 16 10 O -0.58 -32.96 16.74 13.47 0.23 -32.73 16 11 C -0.13 -5.97 5.87 -20.13 -0.12 -6.08 16 12 C -0.20 -7.56 9.55 22.70 0.22 -7.34 16 13 C -0.09 -3.44 10.01 22.18 0.22 -3.21 16 14 C -0.21 -9.63 9.78 22.77 0.22 -9.40 16 15 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 16 C -0.49 -26.66 9.05 23.47 0.21 -26.44 16 17 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 18 C 0.03 1.48 5.14 85.25 0.44 1.91 16 19 N -0.82 -46.39 10.95 21.83 0.24 -46.15 16 20 Si 0.98 39.65 29.60 68.60 2.03 41.68 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 24 C -0.13 -7.22 8.24 23.01 0.19 -7.04 16 25 H 0.06 0.68 6.56 -2.39 -0.02 0.66 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.89 7.82 -2.38 -0.02 0.87 16 32 H 0.07 1.24 6.56 -2.39 -0.02 1.22 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.42 11.11 6.56 -92.71 -0.61 10.50 16 36 H 0.14 3.82 6.38 -2.91 -0.02 3.80 16 37 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 38 H 0.11 4.65 8.06 -2.92 -0.02 4.63 16 39 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 40 H 0.10 6.20 5.74 -2.91 -0.02 6.19 16 Total: -1.00 -71.72 335.95 5.41 -66.30 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.43 Total: 30.31 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 3.83 Total: -31.72 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -0.87 Total: -67.72 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: 0.00 Total: -38.85 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -71.72 5.41 -66.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293720038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.837 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds