Wall clock time and date at job start Mon Mar 30 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47099 * 183.96267 * 3 2 1 5 5 H 1.08995 * 109.47177 * 305.11002 * 4 3 2 6 6 O 1.42899 * 109.47080 * 65.11507 * 4 3 2 7 7 C 1.42902 * 113.99689 * 209.52143 * 6 4 3 8 8 C 1.50706 * 109.46662 * 185.11370 * 4 3 2 9 9 O 1.21281 * 119.99877 * 245.00077 * 8 4 3 10 10 N 1.34778 * 120.00102 * 65.00283 * 8 4 3 11 11 C 1.39230 * 120.00010 * 184.97492 * 10 8 4 12 12 C 1.39478 * 119.83663 * 212.46971 * 11 10 8 13 13 C 1.36375 * 120.17125 * 179.72179 * 12 11 10 14 14 C 1.40870 * 119.82912 * 0.56809 * 13 12 11 15 15 C 1.41149 * 120.16957 * 179.68008 * 14 13 12 16 16 H 1.07991 * 120.00723 * 206.03700 * 15 14 13 17 17 C 1.39908 * 119.99411 * 26.03681 * 15 14 13 18 18 N 1.30872 * 120.00498 * 16.43836 * 17 15 14 19 19 Si 1.86799 * 119.99753 * 196.44162 * 17 15 14 20 20 H 1.48499 * 109.47307 * 59.99712 * 19 17 15 21 21 H 1.48501 * 109.47528 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47263 * 299.99763 * 19 17 15 23 23 C 1.40872 * 119.66994 * 359.70270 * 14 13 12 24 24 C 1.36378 * 119.82897 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.46635 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47271 * 299.99923 * 1 2 3 27 27 H 1.08994 * 109.47030 * 60.00290 * 1 2 3 28 28 H 1.09002 * 109.47271 * 240.00077 * 2 1 3 29 29 H 1.09001 * 109.47377 * 119.99873 * 2 1 3 30 30 H 1.09007 * 109.46824 * 63.96264 * 3 2 1 31 31 H 1.08999 * 109.47011 * 303.96542 * 3 2 1 32 32 H 1.08999 * 109.46796 * 304.78891 * 7 6 4 33 33 H 1.08989 * 109.47328 * 64.78896 * 7 6 4 34 34 H 1.09004 * 109.46840 * 184.79272 * 7 6 4 35 35 H 0.97000 * 119.99746 * 4.96977 * 10 8 4 36 36 H 1.08004 * 119.91267 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.08521 * 180.25355 * 13 12 11 38 38 H 0.96999 * 120.00052 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.08502 * 179.97438 * 23 14 13 40 40 H 1.07997 * 119.91546 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4436 -0.0997 5 1 3.9836 0.8337 0.7017 6 8 3.9620 0.9054 -1.3630 7 6 5.2312 0.2490 -1.3437 8 6 4.0773 2.8560 0.0265 9 8 4.6376 3.3842 -0.9104 10 7 3.9112 3.5320 1.1806 11 6 4.2889 4.8694 1.2646 12 6 4.7663 5.3813 2.4710 13 6 5.1435 6.6888 2.5594 14 6 5.0387 7.5261 1.4314 15 6 5.4208 8.8823 1.5166 16 1 4.9801 9.6103 0.8518 17 6 6.3704 9.2832 2.4626 18 7 7.1349 8.3922 3.0407 19 14 6.5470 11.0906 2.9005 20 1 5.2616 11.5956 3.4462 21 1 7.6143 11.2509 3.9205 22 1 6.9052 11.8621 1.6832 23 6 4.5503 7.0033 0.2179 24 6 4.1822 5.6923 0.1433 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7358 1.9354 0.9234 31 1 1.6198 1.9764 -0.8523 32 1 5.9880 0.9329 -0.9595 33 1 5.1760 -0.6298 -0.7014 34 1 5.4977 -0.0566 -2.3555 35 1 3.5284 3.0867 1.9527 36 1 4.8412 4.7394 3.3364 37 1 5.5168 7.0827 3.4932 38 1 7.7931 8.6702 3.6968 39 1 4.4668 7.6393 -0.6510 40 1 3.8072 5.2901 -0.7862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294249184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:10 Heat of formation + Delta-G solvation = -75.438100 kcal Electronic energy + Delta-G solvation = -21096.530219 eV Core-core repulsion = 17875.640636 eV Total energy + Delta-G solvation = -3220.889583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01384 -38.02635 -36.77673 -34.97788 -34.33234 -32.95083 -30.30406 -29.53128 -28.69953 -26.41176 -25.44618 -23.99342 -21.64315 -21.32559 -20.73525 -19.57083 -17.44991 -17.23040 -16.98013 -16.02281 -15.49182 -15.19588 -14.87164 -14.57388 -14.22769 -13.90976 -13.47924 -13.38671 -12.95594 -12.68120 -12.45385 -12.19437 -12.06593 -11.85216 -11.52085 -11.37381 -11.25519 -11.15819 -11.09960 -10.94676 -10.74787 -10.74163 -10.38296 -9.89691 -9.57619 -9.30830 -8.99805 -8.74288 -7.54681 -6.96960 -6.73883 -4.30230 2.53450 3.00096 3.06026 3.09212 3.10150 3.37427 3.47394 3.89745 3.93390 4.61044 4.68581 4.76313 4.90968 5.00035 5.16143 5.29192 5.37145 5.46525 5.52209 5.65519 5.69438 5.70032 5.74036 5.94475 6.05272 6.17314 6.18464 6.43527 6.76956 6.87555 7.03601 7.05027 7.19030 7.28936 7.59247 7.72180 7.89522 8.03069 8.27997 8.29420 8.58958 8.76869 8.88149 8.99852 10.18252 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.003437 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.590390 B = 8145.639076 C = 8424.271043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.077 3.923 5 H 0.081 0.919 6 O -0.357 6.357 7 C 0.030 3.970 8 C 0.472 3.528 9 O -0.516 6.516 10 N -0.648 5.648 11 C -0.007 4.007 12 C -0.115 4.115 13 C -0.152 4.152 14 C 0.106 3.894 15 C -0.459 4.459 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.794 5.794 19 Si 0.910 3.090 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.215 4.215 24 C -0.077 4.077 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.281 0.719 39 H 0.095 0.905 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 -14.228 -0.182 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.150 4.150 4 C 0.015 3.985 5 H 0.099 0.901 6 O -0.274 6.274 7 C -0.066 4.066 8 C 0.257 3.743 9 O -0.392 6.392 10 N -0.293 5.293 11 C -0.099 4.099 12 C -0.135 4.135 13 C -0.172 4.172 14 C 0.103 3.897 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.235 4.235 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.881 -13.883 -0.899 15.520 hybrid contribution 0.381 0.530 0.879 1.095 sum -6.500 -13.352 -0.020 14.850 Atomic orbital electron populations 1.21768 0.95652 1.01533 1.02016 1.21492 0.95942 0.96011 1.02428 1.21688 0.91345 0.98364 1.03618 1.22068 0.96570 0.91908 0.87988 0.90135 1.87959 1.36158 1.73579 1.29728 1.22822 0.85554 0.95517 1.02731 1.21269 0.80711 0.88573 0.83702 1.90704 1.40914 1.69177 1.38361 1.43050 1.61827 1.11071 1.13381 1.17175 1.13801 0.82282 0.96642 1.20209 1.01644 0.96573 0.95049 1.20878 1.04307 0.92675 0.99334 1.17655 0.88708 0.93204 0.90107 1.19531 1.19832 0.93953 1.15518 0.90392 1.25921 0.94059 0.99900 0.94440 1.69833 1.14900 1.35954 1.21303 0.86344 0.78765 0.82442 0.79032 1.18820 1.20363 1.18993 1.20672 1.11096 0.94488 0.97215 1.20278 0.99759 0.93256 0.96410 0.92791 0.92685 0.92576 0.91097 0.92139 0.90032 0.90297 0.93512 0.94239 0.89463 0.77325 0.89205 0.86152 0.90823 0.88689 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.07 5.87 -26.73 -0.16 -1.23 16 3 C -0.11 -1.23 4.89 -26.73 -0.13 -1.36 16 4 C 0.08 1.01 2.51 -27.88 -0.07 0.94 16 5 H 0.08 0.85 7.83 -51.93 -0.41 0.45 16 6 O -0.36 -5.17 9.36 -55.09 -0.52 -5.68 16 7 C 0.03 0.36 10.79 101.05 1.09 1.45 16 8 C 0.47 8.51 6.84 -10.98 -0.08 8.43 16 9 O -0.52 -11.79 14.11 -14.30 -0.20 -11.99 16 10 N -0.65 -11.47 5.19 -9.74 -0.05 -11.52 16 11 C -0.01 -0.15 6.30 -83.57 -0.53 -0.68 16 12 C -0.11 -2.63 9.89 -39.79 -0.39 -3.02 16 13 C -0.15 -3.92 8.63 -39.26 -0.34 -4.26 16 14 C 0.11 2.86 5.56 -106.80 -0.59 2.27 16 15 C -0.46 -12.26 9.04 -37.85 -0.34 -12.61 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 18 N -0.79 -20.57 10.97 55.55 0.61 -19.96 16 19 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 C -0.21 -5.55 9.74 -39.26 -0.38 -5.93 16 24 C -0.08 -1.89 8.58 -39.79 -0.34 -2.24 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.68 7.72 -51.93 -0.40 0.27 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.39 5.34 8.68 -40.82 -0.35 4.99 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.12 3.16 6.21 -52.49 -0.33 2.84 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.10 2.51 6.33 -52.49 -0.33 2.18 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -31.30 336.36 -8.11 -39.41 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.01 Total: 8.32 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.98 Total: -17.28 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.56 Total: -31.48 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.72 Total: -17.68 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.30 -8.11 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294249184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.026 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds