Wall clock time and date at job start Mon Mar 30 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47099 * 183.96267 * 3 2 1 5 5 H 1.08995 * 109.47177 * 305.11002 * 4 3 2 6 6 O 1.42899 * 109.47080 * 65.11507 * 4 3 2 7 7 C 1.42902 * 113.99689 * 209.52143 * 6 4 3 8 8 C 1.50706 * 109.46662 * 185.11370 * 4 3 2 9 9 O 1.21281 * 119.99877 * 245.00077 * 8 4 3 10 10 N 1.34778 * 120.00102 * 65.00283 * 8 4 3 11 11 C 1.39230 * 120.00010 * 184.97492 * 10 8 4 12 12 C 1.39478 * 119.83663 * 212.46971 * 11 10 8 13 13 C 1.36375 * 120.17125 * 179.72179 * 12 11 10 14 14 C 1.40870 * 119.82912 * 0.56809 * 13 12 11 15 15 C 1.41149 * 120.16957 * 179.68008 * 14 13 12 16 16 H 1.07991 * 120.00723 * 206.03700 * 15 14 13 17 17 C 1.39908 * 119.99411 * 26.03681 * 15 14 13 18 18 N 1.30872 * 120.00498 * 16.43836 * 17 15 14 19 19 Si 1.86799 * 119.99753 * 196.44162 * 17 15 14 20 20 H 1.48499 * 109.47307 * 59.99712 * 19 17 15 21 21 H 1.48501 * 109.47528 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47263 * 299.99763 * 19 17 15 23 23 C 1.40872 * 119.66994 * 359.70270 * 14 13 12 24 24 C 1.36378 * 119.82897 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.46635 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47271 * 299.99923 * 1 2 3 27 27 H 1.08994 * 109.47030 * 60.00290 * 1 2 3 28 28 H 1.09002 * 109.47271 * 240.00077 * 2 1 3 29 29 H 1.09001 * 109.47377 * 119.99873 * 2 1 3 30 30 H 1.09007 * 109.46824 * 63.96264 * 3 2 1 31 31 H 1.08999 * 109.47011 * 303.96542 * 3 2 1 32 32 H 1.08999 * 109.46796 * 304.78891 * 7 6 4 33 33 H 1.08989 * 109.47328 * 64.78896 * 7 6 4 34 34 H 1.09004 * 109.46840 * 184.79272 * 7 6 4 35 35 H 0.97000 * 119.99746 * 4.96977 * 10 8 4 36 36 H 1.08004 * 119.91267 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.08521 * 180.25355 * 13 12 11 38 38 H 0.96999 * 120.00052 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.08502 * 179.97438 * 23 14 13 40 40 H 1.07997 * 119.91546 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4436 -0.0997 5 1 3.9836 0.8337 0.7017 6 8 3.9620 0.9054 -1.3630 7 6 5.2312 0.2490 -1.3437 8 6 4.0773 2.8560 0.0265 9 8 4.6376 3.3842 -0.9104 10 7 3.9112 3.5320 1.1806 11 6 4.2889 4.8694 1.2646 12 6 4.7663 5.3813 2.4710 13 6 5.1435 6.6888 2.5594 14 6 5.0387 7.5261 1.4314 15 6 5.4208 8.8823 1.5166 16 1 4.9801 9.6103 0.8518 17 6 6.3704 9.2832 2.4626 18 7 7.1349 8.3922 3.0407 19 14 6.5470 11.0906 2.9005 20 1 5.2616 11.5956 3.4462 21 1 7.6143 11.2509 3.9205 22 1 6.9052 11.8621 1.6832 23 6 4.5503 7.0033 0.2179 24 6 4.1822 5.6923 0.1433 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7358 1.9354 0.9234 31 1 1.6198 1.9764 -0.8523 32 1 5.9880 0.9329 -0.9595 33 1 5.1760 -0.6298 -0.7014 34 1 5.4977 -0.0566 -2.3555 35 1 3.5284 3.0867 1.9527 36 1 4.8412 4.7394 3.3364 37 1 5.5168 7.0827 3.4932 38 1 7.7931 8.6702 3.6968 39 1 4.4668 7.6393 -0.6510 40 1 3.8072 5.2901 -0.7862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294249184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:09 Heat of formation + Delta-G solvation = -93.873906 kcal Electronic energy + Delta-G solvation = -21097.329656 eV Core-core repulsion = 17875.640636 eV Total energy + Delta-G solvation = -3221.689020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47004 -39.54395 -38.30076 -36.24335 -35.67711 -34.69247 -31.64468 -31.35558 -30.29042 -27.41535 -26.96131 -25.30799 -23.41891 -22.56738 -22.08671 -21.12290 -19.30774 -18.72068 -18.24746 -17.43662 -16.99667 -16.62994 -15.94354 -15.79136 -15.63768 -15.52719 -14.81195 -14.65779 -14.30052 -14.17340 -14.00047 -13.71385 -13.25146 -13.24399 -13.02105 -12.87453 -12.77263 -12.50380 -12.37636 -12.02689 -11.94275 -11.78853 -11.50935 -11.45488 -11.39194 -11.15817 -10.76607 -10.21371 -9.49485 -8.86215 -8.61283 -6.29459 0.76837 1.11102 1.38618 1.44037 1.51236 1.76608 2.18329 2.22219 2.72578 2.81997 3.64758 3.69940 3.86966 3.93949 4.23111 4.29612 4.37760 4.45953 4.47132 4.52653 4.70797 4.74937 4.82133 4.89929 4.94551 5.04453 5.09258 5.13107 5.27276 5.29219 5.37667 5.41672 5.51118 5.63564 5.84726 5.97284 6.04132 6.11143 6.35463 6.62853 6.72587 6.91232 6.97031 7.37729 8.32481 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.003437 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.590390 B = 8145.639076 C = 8424.271043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.110 4.110 4 C 0.086 3.914 5 H 0.119 0.881 6 O -0.378 6.378 7 C 0.025 3.975 8 C 0.469 3.531 9 O -0.570 6.570 10 N -0.638 5.638 11 C 0.008 3.992 12 C -0.111 4.111 13 C -0.169 4.169 14 C 0.076 3.924 15 C -0.498 4.498 16 H 0.074 0.926 17 C 0.035 3.965 18 N -0.825 5.825 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.235 4.235 24 C -0.090 4.090 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.418 0.582 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.290 0.710 39 H 0.091 0.909 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -16.014 1.380 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.147 4.147 4 C 0.024 3.976 5 H 0.136 0.864 6 O -0.296 6.296 7 C -0.071 4.071 8 C 0.257 3.743 9 O -0.448 6.448 10 N -0.285 5.285 11 C -0.086 4.086 12 C -0.131 4.131 13 C -0.189 4.189 14 C 0.073 3.927 15 C -0.527 4.527 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.451 5.451 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.188 1.188 23 C -0.255 4.255 24 C -0.110 4.110 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.256 0.744 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.464 -15.721 0.682 17.416 hybrid contribution 0.536 0.921 0.325 1.114 sum -6.929 -14.800 1.008 16.373 Atomic orbital electron populations 1.21771 0.95046 1.02302 1.01888 1.21453 0.96397 0.94283 1.03077 1.21739 0.89478 1.00010 1.03512 1.22201 0.97863 0.88631 0.88856 0.86360 1.87951 1.37176 1.73682 1.30745 1.22997 0.83942 0.95928 1.04227 1.22357 0.79140 0.90331 0.82454 1.90686 1.43191 1.70837 1.40102 1.42958 1.61581 1.09247 1.14672 1.17241 1.11527 0.84202 0.95598 1.20492 1.00185 0.96010 0.96391 1.20909 1.05405 0.93955 0.98645 1.17971 0.89755 0.94077 0.90862 1.19769 1.21487 0.94161 1.17320 0.90798 1.26762 0.92931 1.04688 0.93584 1.69870 1.15319 1.38162 1.21716 0.85212 0.79124 0.76220 0.78891 1.18230 1.18934 1.18759 1.20785 1.12204 0.95312 0.97166 1.20361 1.00317 0.93160 0.97166 0.91593 0.92091 0.93502 0.91851 0.90048 0.88436 0.92436 0.95667 0.90850 0.88435 0.74444 0.85470 0.87060 0.89956 0.89030 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.11 -1.65 5.87 30.60 0.18 -1.47 16 3 C -0.11 -2.12 4.89 30.59 0.15 -1.97 16 4 C 0.09 2.05 2.51 29.85 0.07 2.12 16 5 H 0.12 1.97 7.83 -2.39 -0.02 1.95 16 6 O -0.38 -10.31 9.36 -129.99 -1.22 -11.52 16 7 C 0.03 0.54 10.79 113.37 1.22 1.76 16 8 C 0.47 16.33 6.84 87.66 0.60 16.93 16 9 O -0.57 -26.28 14.11 15.96 0.23 -26.05 16 10 N -0.64 -21.29 5.19 -303.11 -1.57 -22.86 16 11 C 0.01 0.35 6.30 38.57 0.24 0.59 16 12 C -0.11 -4.97 9.89 22.13 0.22 -4.75 16 13 C -0.17 -8.85 8.63 22.48 0.19 -8.66 16 14 C 0.08 4.25 5.56 -21.28 -0.12 4.13 16 15 C -0.50 -27.60 9.04 23.39 0.21 -27.39 16 16 H 0.07 3.97 7.90 -2.92 -0.02 3.95 16 17 C 0.04 1.79 5.15 85.24 0.44 2.23 16 18 N -0.82 -43.24 10.97 21.82 0.24 -43.00 16 19 Si 0.99 38.41 29.59 68.60 2.03 40.44 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 23 C -0.23 -12.67 9.74 22.48 0.22 -12.45 16 24 C -0.09 -4.53 8.58 22.14 0.19 -4.34 16 25 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.03 7.72 -2.39 -0.02 1.01 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.56 7.92 -2.38 -0.02 1.54 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.02 0.64 8.11 -2.39 -0.02 0.62 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.42 9.88 8.68 -92.71 -0.80 9.07 16 36 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 37 H 0.11 5.96 6.21 -2.91 -0.02 5.94 16 38 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.10 4.95 6.33 -2.91 -0.02 4.94 16 Total: -1.00 -70.88 336.36 4.47 -66.41 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.23 Total: 31.11 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 4.54 Total: -34.53 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.33 Total: -65.86 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.99 Total: -37.57 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -70.88 4.47 -66.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294249184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.461 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds