Wall clock time and date at job start Mon Mar 30 2020 01:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46893 * 2 1 4 4 C 1.53002 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46660 * 54.99860 * 4 3 2 6 6 O 1.42898 * 109.47282 * 295.00007 * 4 3 2 7 7 C 1.42900 * 114.00100 * 150.00009 * 6 4 3 8 8 C 1.50698 * 109.46990 * 174.99497 * 4 3 2 9 9 O 1.21287 * 119.99398 * 115.00117 * 8 4 3 10 10 N 1.34767 * 120.00434 * 295.00598 * 8 4 3 11 11 C 1.39244 * 120.00281 * 174.90056 * 10 8 4 12 12 C 1.39482 * 119.82704 * 325.33722 * 11 10 8 13 13 C 1.36376 * 120.16563 * 179.76104 * 12 11 10 14 14 C 1.40869 * 119.82556 * 0.51443 * 13 12 11 15 15 C 1.41153 * 120.16329 * 179.71549 * 14 13 12 16 16 H 1.07999 * 120.00380 * 205.36247 * 15 14 13 17 17 C 1.39914 * 120.00064 * 25.37025 * 15 14 13 18 18 N 1.30871 * 119.99521 * 16.81796 * 17 15 14 19 19 Si 1.86792 * 120.00125 * 196.81885 * 17 15 14 20 20 H 1.48505 * 109.47232 * 59.99869 * 19 17 15 21 21 H 1.48506 * 109.47188 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47383 * 299.99751 * 19 17 15 23 23 C 1.40866 * 119.67769 * 359.74161 * 14 13 12 24 24 C 1.36376 * 119.82602 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.46918 * 60.00441 * 1 2 3 26 26 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47268 * 300.00426 * 1 2 3 28 28 H 1.08991 * 109.47914 * 239.99891 * 2 1 3 29 29 H 1.09004 * 109.46918 * 119.99559 * 2 1 3 30 30 H 1.09003 * 109.46895 * 59.99705 * 3 2 1 31 31 H 1.09004 * 109.46979 * 299.99522 * 3 2 1 32 32 H 1.08996 * 109.47054 * 59.99668 * 7 6 4 33 33 H 1.08998 * 109.47045 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.46836 * 299.99864 * 7 6 4 35 35 H 0.97001 * 119.99872 * 354.88810 * 10 8 4 36 36 H 1.07998 * 119.92091 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.08770 * 180.25491 * 13 12 11 38 38 H 0.96999 * 119.99860 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.09334 * 179.97438 * 23 14 13 40 40 H 1.07996 * 119.92065 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 8 4.0459 0.8735 1.2219 7 6 5.3056 0.2096 1.1018 8 6 4.0723 2.8580 -0.1233 9 8 4.6926 3.3633 0.7883 10 7 3.8323 3.5623 -1.2469 11 6 4.2025 4.9026 -1.3210 12 6 4.1288 5.7066 -0.1836 13 6 4.4943 7.0189 -0.2472 14 6 4.9368 7.5646 -1.4682 15 6 5.3111 8.9235 -1.5434 16 1 5.2541 9.4480 -2.4858 17 6 5.7563 9.5911 -0.3972 18 7 6.1398 8.9073 0.6507 19 14 5.8031 11.4581 -0.3627 20 1 4.4344 11.9918 -0.5798 21 1 6.3102 11.9162 0.9558 22 1 6.7027 11.9507 -1.4367 23 6 5.0034 6.7477 -2.6138 24 6 4.6401 5.4357 -2.5334 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6765 1.9564 0.8900 31 1 1.6767 1.9564 -0.8901 32 1 6.0596 0.9198 0.7626 33 1 5.5973 -0.1943 2.0713 34 1 5.2207 -0.6028 0.3799 35 1 3.4017 3.1355 -2.0042 36 1 3.7855 5.2878 0.7508 37 1 4.4406 7.6392 0.6352 38 1 6.4480 9.3701 1.4455 39 1 5.3413 7.1592 -3.5534 40 1 4.6902 4.8081 -3.4108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294249189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:13 Heat of formation + Delta-G solvation = -75.085142 kcal Electronic energy + Delta-G solvation = -21159.369345 eV Core-core repulsion = 17938.495067 eV Total energy + Delta-G solvation = -3220.874278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97953 -38.00803 -36.75807 -34.96509 -34.32831 -32.92172 -30.29591 -29.47339 -28.73404 -26.39538 -25.43045 -23.98562 -21.48238 -21.32307 -20.91453 -19.46130 -17.41594 -17.24644 -17.00022 -15.97668 -15.52512 -15.14572 -14.86391 -14.51786 -14.19722 -13.90361 -13.47286 -13.35548 -12.97095 -12.66990 -12.46245 -12.20350 -11.97920 -11.83464 -11.53450 -11.45439 -11.24635 -11.13873 -11.06321 -10.93073 -10.72848 -10.51718 -10.35885 -9.92347 -9.74576 -9.36038 -8.91661 -8.60711 -7.51934 -6.99854 -6.72214 -4.28608 2.56731 3.00434 3.07804 3.10232 3.11488 3.37974 3.49524 3.91543 3.94686 4.63096 4.70314 4.77692 4.91858 5.01447 5.17691 5.29312 5.38511 5.48804 5.53093 5.66552 5.71150 5.71578 5.75258 5.95425 6.06785 6.14708 6.18220 6.38847 6.80636 6.94476 7.05331 7.06213 7.18028 7.29977 7.60130 7.69565 7.98004 8.05781 8.22044 8.32831 8.63448 8.79896 8.89227 9.01843 10.20614 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.003619 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.470198 B = 7736.064922 C = 7991.528560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.077 3.923 5 H 0.080 0.920 6 O -0.357 6.357 7 C 0.030 3.970 8 C 0.472 3.528 9 O -0.513 6.513 10 N -0.651 5.651 11 C -0.007 4.007 12 C -0.085 4.085 13 C -0.155 4.155 14 C 0.107 3.893 15 C -0.460 4.460 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.789 5.789 19 Si 0.909 3.091 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.216 4.216 24 C -0.104 4.104 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.392 0.608 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.282 0.718 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 -14.511 -2.339 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.150 4.150 4 C 0.015 3.985 5 H 0.098 0.902 6 O -0.274 6.274 7 C -0.066 4.066 8 C 0.257 3.743 9 O -0.387 6.387 10 N -0.296 5.296 11 C -0.099 4.099 12 C -0.105 4.105 13 C -0.175 4.175 14 C 0.104 3.896 15 C -0.490 4.490 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.413 5.413 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.236 4.236 24 C -0.124 4.124 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.226 0.774 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.301 -14.135 -1.213 15.524 hybrid contribution 0.241 0.585 -0.560 0.845 sum -6.060 -13.551 -1.773 14.949 Atomic orbital electron populations 1.21770 0.95668 1.01526 1.02025 1.21487 0.95884 0.96022 1.02421 1.21693 0.91164 0.98314 1.03870 1.22078 0.95886 0.91656 0.88886 0.90175 1.87962 1.36535 1.72290 1.30611 1.22830 0.85827 0.95598 1.02393 1.21273 0.81056 0.88456 0.83512 1.90736 1.38678 1.70522 1.38794 1.43041 1.59721 1.10611 1.16207 1.17170 1.14526 0.82318 0.95858 1.20411 1.00325 0.93780 0.95973 1.20987 1.03164 0.94070 0.99248 1.17655 0.88144 0.92841 0.90971 1.19519 1.38447 0.95381 0.95614 0.90415 1.25945 0.92696 1.00906 0.94898 1.69850 1.29305 1.38093 1.04101 0.86353 0.79687 0.82317 0.78263 1.18805 1.20329 1.19035 1.20545 1.10930 0.93282 0.98849 1.20044 1.01548 0.95967 0.94884 0.92693 0.92795 0.92564 0.92174 0.91120 0.90286 0.90033 0.93516 0.89441 0.94260 0.77437 0.88210 0.86227 0.90702 0.88656 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.08 5.83 -26.73 -0.16 -1.24 16 3 C -0.11 -1.25 4.89 -26.73 -0.13 -1.38 16 4 C 0.08 1.03 2.52 -27.88 -0.07 0.96 16 5 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 6 O -0.36 -5.27 9.42 -55.09 -0.52 -5.79 16 7 C 0.03 0.36 10.81 101.05 1.09 1.45 16 8 C 0.47 8.65 6.85 -10.99 -0.08 8.58 16 9 O -0.51 -12.07 14.24 -14.31 -0.20 -12.27 16 10 N -0.65 -11.54 5.19 -9.74 -0.05 -11.59 16 11 C -0.01 -0.15 6.27 -83.57 -0.52 -0.67 16 12 C -0.08 -2.16 8.57 -39.79 -0.34 -2.50 16 13 C -0.15 -4.21 8.63 -39.26 -0.34 -4.55 16 14 C 0.11 2.88 5.57 -106.80 -0.59 2.29 16 15 C -0.46 -12.30 9.04 -37.85 -0.34 -12.64 16 16 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 17 C 0.07 1.89 5.15 -17.33 -0.09 1.80 16 18 N -0.79 -21.07 10.94 55.55 0.61 -20.46 16 19 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 C -0.22 -5.28 9.74 -39.26 -0.38 -5.66 16 24 C -0.10 -2.30 9.90 -39.79 -0.39 -2.70 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.39 5.28 8.70 -40.82 -0.35 4.92 16 36 H 0.10 2.57 6.48 -52.49 -0.34 2.23 16 37 H 0.12 3.38 6.18 -52.49 -0.32 3.05 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -31.82 336.67 -8.11 -39.93 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.02 Total: 8.39 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.98 Total: -17.12 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.56 Total: -32.05 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.72 Total: -18.06 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.82 -8.11 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294249189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.152 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds