Wall clock time and date at job start Mon Mar 30 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46893 * 2 1 4 4 C 1.53002 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46660 * 54.99860 * 4 3 2 6 6 O 1.42898 * 109.47282 * 295.00007 * 4 3 2 7 7 C 1.42900 * 114.00100 * 150.00009 * 6 4 3 8 8 C 1.50698 * 109.46990 * 174.99497 * 4 3 2 9 9 O 1.21287 * 119.99398 * 115.00117 * 8 4 3 10 10 N 1.34767 * 120.00434 * 295.00598 * 8 4 3 11 11 C 1.39244 * 120.00281 * 174.90056 * 10 8 4 12 12 C 1.39482 * 119.82704 * 325.33722 * 11 10 8 13 13 C 1.36376 * 120.16563 * 179.76104 * 12 11 10 14 14 C 1.40869 * 119.82556 * 0.51443 * 13 12 11 15 15 C 1.41153 * 120.16329 * 179.71549 * 14 13 12 16 16 H 1.07999 * 120.00380 * 205.36247 * 15 14 13 17 17 C 1.39914 * 120.00064 * 25.37025 * 15 14 13 18 18 N 1.30871 * 119.99521 * 16.81796 * 17 15 14 19 19 Si 1.86792 * 120.00125 * 196.81885 * 17 15 14 20 20 H 1.48505 * 109.47232 * 59.99869 * 19 17 15 21 21 H 1.48506 * 109.47188 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47383 * 299.99751 * 19 17 15 23 23 C 1.40866 * 119.67769 * 359.74161 * 14 13 12 24 24 C 1.36376 * 119.82602 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.46918 * 60.00441 * 1 2 3 26 26 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47268 * 300.00426 * 1 2 3 28 28 H 1.08991 * 109.47914 * 239.99891 * 2 1 3 29 29 H 1.09004 * 109.46918 * 119.99559 * 2 1 3 30 30 H 1.09003 * 109.46895 * 59.99705 * 3 2 1 31 31 H 1.09004 * 109.46979 * 299.99522 * 3 2 1 32 32 H 1.08996 * 109.47054 * 59.99668 * 7 6 4 33 33 H 1.08998 * 109.47045 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.46836 * 299.99864 * 7 6 4 35 35 H 0.97001 * 119.99872 * 354.88810 * 10 8 4 36 36 H 1.07998 * 119.92091 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.08770 * 180.25491 * 13 12 11 38 38 H 0.96999 * 119.99860 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.09334 * 179.97438 * 23 14 13 40 40 H 1.07996 * 119.92065 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 8 4.0459 0.8735 1.2219 7 6 5.3056 0.2096 1.1018 8 6 4.0723 2.8580 -0.1233 9 8 4.6926 3.3633 0.7883 10 7 3.8323 3.5623 -1.2469 11 6 4.2025 4.9026 -1.3210 12 6 4.1288 5.7066 -0.1836 13 6 4.4943 7.0189 -0.2472 14 6 4.9368 7.5646 -1.4682 15 6 5.3111 8.9235 -1.5434 16 1 5.2541 9.4480 -2.4858 17 6 5.7563 9.5911 -0.3972 18 7 6.1398 8.9073 0.6507 19 14 5.8031 11.4581 -0.3627 20 1 4.4344 11.9918 -0.5798 21 1 6.3102 11.9162 0.9558 22 1 6.7027 11.9507 -1.4367 23 6 5.0034 6.7477 -2.6138 24 6 4.6401 5.4357 -2.5334 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6765 1.9564 0.8900 31 1 1.6767 1.9564 -0.8901 32 1 6.0596 0.9198 0.7626 33 1 5.5973 -0.1943 2.0713 34 1 5.2207 -0.6028 0.3799 35 1 3.4017 3.1355 -2.0042 36 1 3.7855 5.2878 0.7508 37 1 4.4406 7.6392 0.6352 38 1 6.4480 9.3701 1.4455 39 1 5.3413 7.1592 -3.5534 40 1 4.6902 4.8081 -3.4108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294249189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:12 Heat of formation + Delta-G solvation = -94.397325 kcal Electronic energy + Delta-G solvation = -21160.206784 eV Core-core repulsion = 17938.495067 eV Total energy + Delta-G solvation = -3221.711717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45223 -39.53622 -38.29684 -36.25627 -35.68274 -34.67340 -31.64601 -31.33202 -30.30750 -27.41496 -26.96062 -25.30846 -23.28803 -22.72982 -22.08520 -21.04678 -19.27632 -18.79349 -18.23968 -17.36842 -17.10200 -16.55175 -15.88797 -15.79947 -15.66308 -15.56001 -14.80961 -14.63955 -14.32634 -14.17031 -13.95184 -13.71684 -13.36825 -13.25951 -12.99112 -12.79052 -12.73172 -12.36784 -12.33418 -12.03095 -11.96551 -11.76258 -11.73181 -11.47625 -11.42829 -11.19057 -10.61893 -10.19013 -9.47479 -8.88839 -8.62149 -6.28659 0.78417 1.12160 1.36938 1.43701 1.50785 1.76739 2.18808 2.21650 2.73762 2.82363 3.65996 3.71696 3.86778 3.94095 4.22708 4.29824 4.42211 4.43404 4.45555 4.51838 4.70018 4.75487 4.81755 4.92492 4.96266 5.04337 5.08412 5.17193 5.27120 5.28353 5.37330 5.41912 5.50901 5.65775 5.82555 6.03255 6.06979 6.10047 6.32722 6.66083 6.73142 6.91037 6.99505 7.40530 8.32634 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.003619 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.470198 B = 7736.064922 C = 7991.528560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.086 3.914 5 H 0.122 0.878 6 O -0.380 6.380 7 C 0.025 3.975 8 C 0.468 3.532 9 O -0.572 6.572 10 N -0.638 5.638 11 C 0.006 3.994 12 C -0.100 4.100 13 C -0.181 4.181 14 C 0.074 3.926 15 C -0.495 4.495 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.830 5.830 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.255 1.255 23 C -0.223 4.223 24 C -0.097 4.097 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.023 0.977 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.419 0.581 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.286 0.714 39 H 0.112 0.888 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 -16.298 -4.557 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.148 4.148 4 C 0.025 3.975 5 H 0.139 0.861 6 O -0.297 6.297 7 C -0.071 4.071 8 C 0.256 3.744 9 O -0.450 6.450 10 N -0.285 5.285 11 C -0.087 4.087 12 C -0.121 4.121 13 C -0.201 4.201 14 C 0.072 3.928 15 C -0.524 4.524 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.456 5.456 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.179 1.179 23 C -0.243 4.243 24 C -0.117 4.117 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.257 0.743 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.011 -15.972 -3.473 17.786 hybrid contribution 0.433 0.952 0.124 1.053 sum -6.578 -15.020 -3.349 16.736 Atomic orbital electron populations 1.21774 0.95013 1.02328 1.01904 1.21445 0.96375 0.94201 1.03091 1.21746 0.89397 1.00067 1.03560 1.22226 0.97042 0.88280 0.89965 0.86093 1.87954 1.37551 1.72405 1.31810 1.23007 0.84172 0.95753 1.04178 1.22399 0.79490 0.90308 0.82235 1.90720 1.41289 1.72266 1.40748 1.42933 1.59479 1.08735 1.17366 1.17255 1.12402 0.84137 0.94952 1.20424 1.01138 0.93728 0.96769 1.20871 1.05379 0.94791 0.99044 1.17996 0.89172 0.93897 0.91755 1.19829 1.39967 0.96010 0.96628 0.89804 1.26896 0.91553 1.06092 0.94015 1.69944 1.30465 1.40292 1.04944 0.85189 0.79947 0.75530 0.78646 1.18226 1.19654 1.17895 1.20849 1.10591 0.94201 0.98629 1.20428 0.99586 0.95594 0.96104 0.91981 0.91548 0.93595 0.89927 0.91987 0.92734 0.88320 0.95858 0.88327 0.90695 0.74334 0.89676 0.88729 0.90303 0.86975 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.11 -1.67 5.83 30.60 0.18 -1.49 16 3 C -0.11 -2.19 4.89 30.60 0.15 -2.04 16 4 C 0.09 2.10 2.52 29.85 0.08 2.18 16 5 H 0.12 2.01 7.79 -2.39 -0.02 1.99 16 6 O -0.38 -10.71 9.42 -129.99 -1.22 -11.93 16 7 C 0.02 0.55 10.81 113.37 1.23 1.77 16 8 C 0.47 16.73 6.85 87.66 0.60 17.33 16 9 O -0.57 -27.62 14.24 15.94 0.23 -27.39 16 10 N -0.64 -21.28 5.19 -303.12 -1.57 -22.86 16 11 C 0.01 0.26 6.27 38.56 0.24 0.50 16 12 C -0.10 -5.30 8.57 22.13 0.19 -5.11 16 13 C -0.18 -10.37 8.63 22.48 0.19 -10.18 16 14 C 0.07 4.14 5.57 -21.28 -0.12 4.03 16 15 C -0.50 -27.23 9.04 23.39 0.21 -27.02 16 16 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 17 C 0.03 1.51 5.15 85.24 0.44 1.95 16 18 N -0.83 -46.50 10.94 21.82 0.24 -46.26 16 19 Si 0.99 39.36 29.59 68.60 2.03 41.39 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 23 C -0.22 -10.75 9.74 22.48 0.22 -10.53 16 24 C -0.10 -4.08 9.90 22.13 0.22 -3.86 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.04 7.82 -2.38 -0.02 1.02 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.61 7.93 -2.38 -0.02 1.59 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 35 H 0.42 9.59 8.70 -92.71 -0.81 8.78 16 36 H 0.09 4.66 6.48 -2.91 -0.02 4.64 16 37 H 0.09 5.77 6.18 -2.91 -0.02 5.75 16 38 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -74.09 336.67 4.46 -69.63 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.23 Total: 31.21 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 4.54 Total: -33.79 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.33 Total: -69.12 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.00 Total: -39.32 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -74.09 4.46 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294249189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.767 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds