Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 C 1.52999 * 109.47388 * 120.00146 * 2 1 3 5 5 N 1.46496 * 109.47622 * 174.99617 * 4 2 1 6 6 C 1.46505 * 119.99867 * 270.00272 * 5 4 2 7 7 C 1.34773 * 120.00064 * 90.00035 * 5 4 2 8 8 O 1.21595 * 120.00083 * 355.20866 * 7 5 4 9 9 C 1.47529 * 120.00220 * 175.20934 * 7 5 4 10 10 C 1.39669 * 120.19893 * 316.69256 * 9 7 5 11 11 C 1.37828 * 119.91823 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.32719 * 0.02562 * 11 10 9 13 13 C 1.38018 * 120.40009 * 359.97438 * 12 11 10 14 14 C 1.38839 * 120.07632 * 359.97438 * 13 12 11 15 15 O 1.35512 * 120.16680 * 180.02562 * 14 13 12 16 16 C 1.34819 * 116.99888 * 355.42039 * 15 14 13 17 17 H 1.07998 * 119.99751 * 4.98085 * 16 15 14 18 18 C 1.38696 * 120.00375 * 184.98425 * 16 15 14 19 19 N 1.31524 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00366 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46981 * 59.99918 * 20 18 16 22 22 H 1.48499 * 109.46808 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46987 * 299.99771 * 20 18 16 24 24 H 1.09006 * 109.47197 * 300.00008 * 1 2 3 25 25 H 1.09002 * 109.47064 * 59.99331 * 1 2 3 26 26 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46719 * 240.00009 * 2 1 3 28 28 H 1.08993 * 109.47080 * 300.00251 * 3 2 1 29 29 H 1.08994 * 109.46913 * 60.00299 * 3 2 1 30 30 H 1.09001 * 109.46628 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46808 * 54.99915 * 4 2 1 32 32 H 1.09001 * 109.47071 * 295.00270 * 4 2 1 33 33 H 1.08995 * 109.47327 * 268.91605 * 6 5 4 34 34 H 1.08997 * 109.47543 * 28.92069 * 6 5 4 35 35 H 1.09002 * 109.46525 * 148.91839 * 6 5 4 36 36 H 1.07998 * 120.03912 * 0.24813 * 10 9 7 37 37 H 1.08002 * 119.83022 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.79967 * 179.97438 * 12 11 10 39 39 H 1.07998 * 119.96547 * 179.97438 * 13 12 11 40 40 H 0.96998 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9921 0.5611 7 6 4.2676 0.1490 1.7155 8 8 3.7512 1.1564 2.1595 9 6 5.7343 -0.0054 1.7516 10 6 6.3035 -1.2231 2.1310 11 6 7.6745 -1.3610 2.1622 12 6 8.4928 -0.2966 1.8192 13 6 7.9446 0.9126 1.4423 14 6 6.5657 1.0697 1.4040 15 8 6.0255 2.2561 1.0337 16 6 6.8804 3.2733 0.8058 17 1 7.9460 3.1015 0.8421 18 6 6.3914 4.5405 0.5249 19 7 5.0937 4.7496 0.4803 20 14 7.5759 5.9502 0.2099 21 1 8.4294 5.6271 -0.9616 22 1 6.8072 7.1905 -0.0653 23 1 8.4327 6.1533 1.4056 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1370 33 1 4.2996 -2.7616 1.3132 34 1 3.4670 -2.3839 -0.2139 35 1 5.0761 -1.6980 0.1157 36 1 5.6701 -2.0569 2.3954 37 1 8.1131 -2.3034 2.4554 38 1 9.5660 -0.4140 1.8470 39 1 8.5890 1.7376 1.1767 40 1 4.7517 5.6358 0.2842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299151375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -37.139370 kcal Electronic energy + Delta-G solvation = -22294.214674 eV Core-core repulsion = 19074.985848 eV Total energy + Delta-G solvation = -3219.228826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85634 -38.41960 -36.39719 -35.75441 -33.85730 -32.33084 -30.46262 -28.94542 -27.11131 -26.62341 -25.70613 -25.27695 -22.52751 -21.48165 -19.98739 -18.96899 -18.03199 -17.11000 -16.28015 -15.69791 -15.23497 -14.71299 -14.39173 -14.21796 -14.06924 -13.76486 -13.56896 -13.07985 -12.99972 -12.55635 -12.36089 -12.19604 -11.99615 -11.85251 -11.69914 -11.46792 -11.29535 -11.07129 -10.88466 -10.73975 -10.71429 -10.46357 -10.39418 -10.30256 -9.55900 -8.91226 -8.84632 -8.21101 -8.10367 -7.30616 -6.44271 -4.04356 1.81752 2.32044 3.11995 3.14376 3.16624 3.47885 3.68443 3.94274 4.55036 5.04465 5.06663 5.16400 5.19486 5.31833 5.40389 5.45172 5.52698 5.65021 5.69117 5.78888 5.87022 5.95683 5.98558 6.02157 6.15650 6.18422 6.30388 6.31723 6.56472 6.58875 6.68145 6.76145 6.94661 7.05644 7.08685 7.20613 7.26693 7.30805 7.70354 7.91078 8.00969 8.96541 9.02452 9.66093 10.70425 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.007304 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.743632 B = 3832.806792 C = 5592.800216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.126 3.874 5 N -0.625 5.625 6 C 0.085 3.915 7 C 0.569 3.431 8 O -0.505 6.505 9 C -0.220 4.220 10 C -0.042 4.042 11 C -0.228 4.228 12 C -0.054 4.054 13 C -0.237 4.237 14 C 0.188 3.812 15 O -0.143 6.143 16 C -0.401 4.401 17 H 0.093 0.907 18 C 0.045 3.955 19 N -0.839 5.839 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -12.026 -0.984 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.003 3.997 5 N -0.360 5.360 6 C -0.059 4.059 7 C 0.359 3.641 8 O -0.379 6.379 9 C -0.224 4.224 10 C -0.061 4.061 11 C -0.247 4.247 12 C -0.073 4.073 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.042 6.042 16 C -0.477 4.477 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.471 5.471 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.774 -11.141 -0.824 11.511 hybrid contribution 0.770 0.572 -0.252 0.992 sum -2.005 -10.569 -1.075 10.811 Atomic orbital electron populations 1.21771 0.95354 1.00933 1.01948 1.21548 0.95145 0.98322 0.98166 1.21757 1.02927 0.93686 1.00789 1.21431 0.79754 0.99689 0.98814 1.47740 1.05891 1.22150 1.60267 1.21803 0.99189 0.87845 0.97045 1.18195 0.86533 0.81998 0.77405 1.90831 1.74276 1.27204 1.45619 1.18791 0.91845 0.94698 1.17096 1.20872 0.94905 0.94451 0.95871 1.20475 0.93232 0.99163 1.11821 1.20882 0.98632 0.92558 0.95198 1.21133 0.94594 0.99163 1.10770 1.19214 0.90835 0.86806 0.90158 1.84028 1.35178 1.14678 1.70335 1.21354 0.89453 0.86587 1.50287 0.88982 1.25337 0.96794 0.97669 0.96413 1.70078 1.11649 1.23091 1.42299 0.85805 0.79193 0.79368 0.79201 1.19454 1.20198 1.19390 0.92599 0.92724 0.93218 0.91820 0.94232 0.92380 0.91292 0.91494 0.90237 0.93266 0.92039 0.90613 0.86548 0.87291 0.87246 0.85132 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.11 -1.70 3.13 -90.62 -0.28 -1.99 16 3 C -0.13 -2.66 7.87 37.16 0.29 -2.37 16 4 C 0.13 1.90 4.99 -4.04 -0.02 1.88 16 5 N -0.62 -10.69 2.76 -182.81 -0.50 -11.19 16 6 C 0.08 1.11 8.98 59.85 0.54 1.65 16 7 C 0.57 12.54 5.79 -12.47 -0.07 12.47 16 8 O -0.51 -13.30 13.72 -8.58 -0.12 -13.42 16 9 C -0.22 -4.78 4.91 -104.81 -0.51 -5.30 16 10 C -0.04 -0.74 7.86 -39.20 -0.31 -1.05 16 11 C -0.23 -3.75 10.02 -39.61 -0.40 -4.14 16 12 C -0.05 -0.96 10.03 -39.54 -0.40 -1.35 16 13 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 14 C 0.19 4.64 6.63 -38.59 -0.26 4.39 16 15 O -0.14 -4.15 8.64 -13.05 -0.11 -4.26 16 16 C -0.40 -11.29 9.49 30.90 0.29 -10.99 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 19 N -0.84 -24.99 13.67 55.48 0.76 -24.23 16 20 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.07 1.67 5.96 -51.93 -0.31 1.36 16 31 H 0.07 0.79 8.07 -51.92 -0.42 0.37 16 32 H 0.08 1.34 7.49 -51.93 -0.39 0.95 16 33 H 0.05 0.54 6.91 -51.93 -0.36 0.18 16 34 H 0.06 0.66 8.06 -51.93 -0.42 0.25 16 35 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 36 H 0.12 1.69 6.15 -52.49 -0.32 1.36 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -33.03 326.18 -6.95 -39.99 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.63 Total: 5.16 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.24 Total: -12.51 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.25 Total: -35.43 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.23 Total: -17.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.03 -6.95 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299151375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.847 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds