Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 C 1.52999 * 109.47388 * 120.00146 * 2 1 3 5 5 N 1.46496 * 109.47622 * 174.99617 * 4 2 1 6 6 C 1.46505 * 119.99867 * 270.00272 * 5 4 2 7 7 C 1.34773 * 120.00064 * 90.00035 * 5 4 2 8 8 O 1.21595 * 120.00083 * 355.20866 * 7 5 4 9 9 C 1.47529 * 120.00220 * 175.20934 * 7 5 4 10 10 C 1.39669 * 120.19893 * 316.69256 * 9 7 5 11 11 C 1.37828 * 119.91823 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.32719 * 0.02562 * 11 10 9 13 13 C 1.38018 * 120.40009 * 359.97438 * 12 11 10 14 14 C 1.38839 * 120.07632 * 359.97438 * 13 12 11 15 15 O 1.35512 * 120.16680 * 180.02562 * 14 13 12 16 16 C 1.34819 * 116.99888 * 355.42039 * 15 14 13 17 17 H 1.07998 * 119.99751 * 4.98085 * 16 15 14 18 18 C 1.38696 * 120.00375 * 184.98425 * 16 15 14 19 19 N 1.31524 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00366 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46981 * 59.99918 * 20 18 16 22 22 H 1.48499 * 109.46808 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46987 * 299.99771 * 20 18 16 24 24 H 1.09006 * 109.47197 * 300.00008 * 1 2 3 25 25 H 1.09002 * 109.47064 * 59.99331 * 1 2 3 26 26 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46719 * 240.00009 * 2 1 3 28 28 H 1.08993 * 109.47080 * 300.00251 * 3 2 1 29 29 H 1.08994 * 109.46913 * 60.00299 * 3 2 1 30 30 H 1.09001 * 109.46628 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46808 * 54.99915 * 4 2 1 32 32 H 1.09001 * 109.47071 * 295.00270 * 4 2 1 33 33 H 1.08995 * 109.47327 * 268.91605 * 6 5 4 34 34 H 1.08997 * 109.47543 * 28.92069 * 6 5 4 35 35 H 1.09002 * 109.46525 * 148.91839 * 6 5 4 36 36 H 1.07998 * 120.03912 * 0.24813 * 10 9 7 37 37 H 1.08002 * 119.83022 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.79967 * 179.97438 * 12 11 10 39 39 H 1.07998 * 119.96547 * 179.97438 * 13 12 11 40 40 H 0.96998 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1257 -1.9921 0.5611 7 6 4.2676 0.1490 1.7155 8 8 3.7512 1.1564 2.1595 9 6 5.7343 -0.0054 1.7516 10 6 6.3035 -1.2231 2.1310 11 6 7.6745 -1.3610 2.1622 12 6 8.4928 -0.2966 1.8192 13 6 7.9446 0.9126 1.4423 14 6 6.5657 1.0697 1.4040 15 8 6.0255 2.2561 1.0337 16 6 6.8804 3.2733 0.8058 17 1 7.9460 3.1015 0.8421 18 6 6.3914 4.5405 0.5249 19 7 5.0937 4.7496 0.4803 20 14 7.5759 5.9502 0.2099 21 1 8.4294 5.6271 -0.9616 22 1 6.8072 7.1905 -0.0653 23 1 8.4327 6.1533 1.4056 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6054 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1370 33 1 4.2996 -2.7616 1.3132 34 1 3.4670 -2.3839 -0.2139 35 1 5.0761 -1.6980 0.1157 36 1 5.6701 -2.0569 2.3954 37 1 8.1131 -2.3034 2.4554 38 1 9.5660 -0.4140 1.8470 39 1 8.5890 1.7376 1.1767 40 1 4.7517 5.6358 0.2842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299151375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -58.764383 kcal Electronic energy + Delta-G solvation = -22295.152405 eV Core-core repulsion = 19074.985848 eV Total energy + Delta-G solvation = -3220.166556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46337 -40.08243 -38.07741 -37.26543 -35.24628 -34.32511 -32.00363 -30.59094 -28.27127 -28.07100 -27.44191 -26.87999 -24.03031 -23.14228 -21.38119 -20.43132 -19.87917 -18.77322 -17.89709 -17.21575 -16.76184 -16.39141 -15.96084 -15.64793 -15.59665 -15.34895 -15.28416 -14.54349 -14.41332 -14.12361 -13.82997 -13.61868 -13.55637 -13.24031 -13.08905 -12.93265 -12.74611 -12.61019 -12.47626 -12.29795 -12.14392 -12.07543 -11.80126 -11.62718 -11.40360 -10.82559 -10.58948 -9.76983 -9.48959 -9.02749 -8.45504 -6.15979 0.24326 0.72816 1.30731 1.43370 1.48192 1.93172 2.14829 2.25480 2.84750 3.17243 3.46085 3.75789 3.93110 4.01137 4.09932 4.14714 4.27410 4.37618 4.52821 4.58694 4.61593 4.68409 4.70376 4.76405 4.85236 4.94073 4.99848 5.00318 5.07770 5.09963 5.15932 5.21376 5.39826 5.49128 5.52757 5.59951 5.71105 5.79891 5.96037 6.18334 6.51115 6.94880 7.42826 7.78130 8.75043 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.007304 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.743632 B = 3832.806792 C = 5592.800216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.124 4.124 4 C 0.122 3.878 5 N -0.617 5.617 6 C 0.076 3.924 7 C 0.558 3.442 8 O -0.568 6.568 9 C -0.235 4.235 10 C -0.034 4.034 11 C -0.196 4.196 12 C -0.046 4.046 13 C -0.255 4.255 14 C 0.145 3.855 15 O -0.205 6.205 16 C -0.423 4.423 17 H 0.105 0.895 18 C -0.021 4.021 19 N -0.907 5.907 20 Si 1.019 2.981 21 H -0.253 1.253 22 H -0.274 1.274 23 H -0.257 1.257 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.017 0.983 31 H 0.120 0.880 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 -16.615 -0.917 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.182 4.182 4 C 0.000 4.000 5 N -0.350 5.350 6 C -0.066 4.066 7 C 0.348 3.652 8 O -0.447 6.447 9 C -0.239 4.239 10 C -0.053 4.053 11 C -0.214 4.214 12 C -0.064 4.064 13 C -0.274 4.274 14 C 0.091 3.909 15 O -0.108 6.108 16 C -0.499 4.499 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.543 5.543 20 Si 0.838 3.162 21 H -0.177 1.177 22 H -0.198 1.198 23 H -0.181 1.181 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.138 0.862 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.139 0.861 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.400 -15.852 -0.766 15.932 hybrid contribution 0.428 1.548 -0.180 1.617 sum -0.972 -14.304 -0.946 14.368 Atomic orbital electron populations 1.21715 0.92448 1.03208 1.01879 1.21516 0.97467 0.94501 0.98873 1.21625 0.99473 0.97629 0.99427 1.21645 0.78718 1.02038 0.97565 1.47812 1.06619 1.21953 1.58622 1.22122 0.99023 0.86707 0.98721 1.18499 0.87219 0.82163 0.77285 1.90798 1.75306 1.29831 1.48729 1.19239 0.91943 0.95714 1.17013 1.21346 0.96267 0.93558 0.94083 1.21163 0.92469 1.00456 1.07359 1.21391 1.01145 0.90950 0.92924 1.21280 0.93243 1.01018 1.11908 1.19980 0.92958 0.86543 0.91413 1.84029 1.36389 1.16335 1.74091 1.21885 0.90186 0.87348 1.50506 0.87796 1.26686 0.98747 1.00551 0.96031 1.70279 1.14323 1.23584 1.46131 0.84656 0.76668 0.75080 0.79799 1.17679 1.19838 1.18118 0.93279 0.92352 0.89634 0.90468 0.94022 0.95200 0.96368 0.86233 0.92795 0.89705 0.88871 0.92194 0.82562 0.81901 0.82982 0.86061 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.19 71.98 0.66 -2.37 16 2 C -0.10 -3.11 3.13 -10.79 -0.03 -3.15 16 3 C -0.12 -5.36 7.87 71.98 0.57 -4.80 16 4 C 0.12 3.54 4.99 86.38 0.43 3.97 16 5 N -0.62 -20.55 2.76 -850.55 -2.35 -22.90 16 6 C 0.08 1.70 8.98 127.77 1.15 2.85 16 7 C 0.56 25.68 5.79 86.69 0.50 26.18 16 8 O -0.57 -32.65 13.72 9.24 0.13 -32.52 16 9 C -0.23 -10.35 4.91 -19.99 -0.10 -10.45 16 10 C -0.03 -1.07 7.86 22.52 0.18 -0.90 16 11 C -0.20 -5.34 10.02 22.25 0.22 -5.12 16 12 C -0.05 -1.46 10.03 22.30 0.22 -1.23 16 13 C -0.26 -11.05 9.16 22.36 0.20 -10.85 16 14 C 0.14 7.53 6.63 22.91 0.15 7.68 16 15 O -0.20 -13.04 8.64 -6.77 -0.06 -13.10 16 16 C -0.42 -25.77 9.49 67.93 0.64 -25.13 16 17 H 0.10 5.70 5.20 -2.91 -0.02 5.69 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.80 16 19 N -0.91 -59.28 13.67 21.62 0.30 -58.99 16 20 Si 1.02 44.72 29.55 68.60 2.03 46.74 16 21 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 30 H 0.02 0.93 5.96 -2.39 -0.01 0.92 16 31 H 0.12 2.25 8.07 -2.38 -0.02 2.23 16 32 H 0.05 1.86 7.49 -2.39 -0.02 1.84 16 33 H 0.08 1.35 6.91 -2.39 -0.02 1.33 16 34 H 0.09 1.55 8.06 -2.39 -0.02 1.53 16 35 H 0.06 1.56 6.43 -2.39 -0.02 1.55 16 36 H 0.16 3.62 6.15 -2.91 -0.02 3.60 16 37 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.12 5.34 5.63 -2.91 -0.02 5.32 16 40 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -86.71 326.18 6.35 -80.37 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 1.04 Total: 24.49 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 5.27 Total: -24.10 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.05 Total: -81.88 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: 0.07 Total: -45.62 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -86.71 6.35 -80.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299151375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.604 kcal (2) G-P(sol) polarization free energy of solvation -86.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds