Wall clock time and date at job start Mon Mar 30 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 C 1.53002 * 109.47491 * 181.50064 * 3 2 1 5 5 H 1.08997 * 109.47098 * 305.35323 * 4 3 2 6 6 O 1.42901 * 109.46574 * 65.35406 * 4 3 2 7 7 C 1.42906 * 113.99808 * 256.94505 * 6 4 3 8 8 C 1.50697 * 109.47201 * 185.35320 * 4 3 2 9 9 O 1.21279 * 120.00060 * 247.28115 * 8 4 3 10 10 N 1.34781 * 120.00169 * 67.28229 * 8 4 3 11 11 C 1.37139 * 119.99872 * 243.67565 * 10 8 4 12 12 H 1.08006 * 119.99234 * 190.46181 * 11 10 8 13 13 C 1.38883 * 120.00079 * 10.46553 * 11 10 8 14 14 N 1.31421 * 120.00166 * 8.42430 * 13 11 10 15 15 Si 1.86806 * 119.99700 * 188.42013 * 13 11 10 16 16 H 1.48505 * 109.46850 * 90.00028 * 15 13 11 17 17 H 1.48497 * 109.47291 * 209.99980 * 15 13 11 18 18 H 1.48495 * 109.47233 * 330.00253 * 15 13 11 19 19 C 1.39789 * 119.99676 * 63.67604 * 10 8 4 20 20 C 1.38962 * 120.07705 * 5.44410 * 19 10 8 21 21 C 1.38083 * 119.91632 * 179.74795 * 20 19 10 22 22 C 1.38304 * 120.08051 * 0.52469 * 21 20 19 23 23 C 1.38303 * 120.15847 * 359.72740 * 22 21 20 24 24 C 1.38086 * 120.07570 * 0.02562 * 23 22 21 25 25 H 1.08993 * 109.46963 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46990 * 299.99932 * 1 2 3 27 27 H 1.08995 * 109.47264 * 59.99558 * 1 2 3 28 28 H 1.09000 * 109.47336 * 239.99969 * 2 1 3 29 29 H 1.09002 * 109.47344 * 120.00052 * 2 1 3 30 30 H 1.09006 * 109.46781 * 61.50368 * 3 2 1 31 31 H 1.08995 * 109.47469 * 301.50394 * 3 2 1 32 32 H 1.09002 * 109.47193 * 294.10413 * 7 6 4 33 33 H 1.08997 * 109.46803 * 54.10136 * 7 6 4 34 34 H 1.09001 * 109.46837 * 174.10388 * 7 6 4 35 35 H 0.97002 * 119.99973 * 184.99868 * 14 13 11 36 36 H 1.08000 * 120.04245 * 359.97438 * 20 19 10 37 37 H 1.08008 * 119.96233 * 180.25507 * 21 20 19 38 38 H 1.08002 * 119.92220 * 179.70421 * 22 21 20 39 39 H 1.08001 * 119.96899 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.04177 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5696 1.4427 -0.0378 5 1 3.9535 0.8408 0.7859 6 8 4.0154 0.8916 -1.2786 7 6 4.4898 -0.4528 -1.1804 8 6 4.0752 2.8561 0.0947 9 8 4.6368 3.3892 -0.8387 10 7 3.9033 3.5278 1.2504 11 6 3.1238 4.6559 1.2785 12 1 3.1197 5.2876 2.1545 13 6 2.3399 4.9858 0.1806 14 7 2.2148 4.1382 -0.8160 15 14 1.4632 6.6342 0.1204 16 1 2.3464 7.6414 -0.5205 17 1 0.2115 6.5007 -0.6673 18 1 1.1350 7.0710 1.5012 19 6 4.5195 3.0747 2.4205 20 6 5.3990 1.9998 2.3731 21 6 6.0098 1.5583 3.5300 22 6 5.7389 2.1774 4.7367 23 6 4.8601 3.2440 4.7885 24 6 4.2495 3.6942 3.6347 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6989 1.9485 0.9032 31 1 1.6549 1.9641 -0.8761 32 1 5.3952 -0.4752 -0.5738 33 1 3.7253 -1.0748 -0.7151 34 1 4.7110 -0.8338 -2.1775 35 1 1.7275 4.3964 -1.6140 36 1 5.6073 1.5128 1.4319 37 1 6.6967 0.7255 3.4933 38 1 6.2145 1.8268 5.6408 39 1 4.6504 3.7250 5.7325 40 1 3.5630 4.5270 3.6758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299182991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:43 Heat of formation + Delta-G solvation = -37.876589 kcal Electronic energy + Delta-G solvation = -22821.032976 eV Core-core repulsion = 19601.772182 eV Total energy + Delta-G solvation = -3219.260794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86692 -37.96222 -36.88148 -34.61344 -33.89448 -32.22188 -30.30913 -29.35515 -28.44062 -26.15900 -25.50474 -23.73140 -21.94058 -21.36093 -20.56823 -19.39641 -17.50396 -16.87575 -16.20346 -15.53252 -15.09441 -14.98298 -14.50248 -14.25292 -14.15768 -13.54311 -13.33222 -13.17149 -12.97834 -12.67402 -12.28476 -12.02740 -11.78124 -11.72646 -11.55245 -11.19170 -11.02293 -10.86942 -10.75243 -10.56466 -10.54298 -10.37450 -10.15486 -10.08609 -9.85954 -9.27566 -8.75293 -8.34564 -8.20684 -6.96569 -6.50429 -3.95396 2.17650 2.27604 3.12396 3.18922 3.21139 3.51325 3.91753 4.17762 4.57467 4.82450 5.06540 5.41477 5.43390 5.52147 5.54780 5.58655 5.62727 5.64306 5.78384 5.84460 5.92979 5.95315 6.17204 6.18846 6.23167 6.28296 6.36967 6.41788 6.55850 6.67516 6.78353 6.85111 7.15216 7.22319 7.27427 7.32192 7.39954 7.62724 7.75324 7.88163 8.60953 8.92532 9.17955 9.52327 10.56418 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.010030 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.724146 B = 2790.999298 C = 4232.827424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.108 4.108 4 C 0.076 3.924 5 H 0.071 0.929 6 O -0.360 6.360 7 C 0.025 3.975 8 C 0.581 3.419 9 O -0.466 6.466 10 N -0.454 5.454 11 C -0.319 4.319 12 H 0.106 0.894 13 C 0.029 3.971 14 N -0.861 5.861 15 Si 0.937 3.063 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.270 1.270 19 C 0.210 3.790 20 C -0.228 4.228 21 C -0.069 4.069 22 C -0.218 4.218 23 C -0.073 4.073 24 C -0.193 4.193 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.279 0.721 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -7.648 4.678 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.146 4.146 4 C 0.014 3.986 5 H 0.088 0.912 6 O -0.277 6.277 7 C -0.072 4.072 8 C 0.370 3.630 9 O -0.334 6.334 10 N -0.160 5.160 11 C -0.445 4.445 12 H 0.124 0.876 13 C -0.176 4.176 14 N -0.499 5.499 15 Si 0.763 3.237 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.194 1.194 19 C 0.101 3.899 20 C -0.251 4.251 21 C -0.088 4.088 22 C -0.239 4.239 23 C -0.092 4.092 24 C -0.216 4.216 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.350 -7.200 3.480 8.005 hybrid contribution -0.450 0.561 0.088 0.725 sum -0.800 -6.639 3.569 7.579 Atomic orbital electron populations 1.21697 0.96113 1.00495 1.01957 1.21693 0.95878 0.98229 1.00838 1.21853 0.92202 0.94973 1.05524 1.22328 0.96342 0.93543 0.86387 0.91152 1.88051 1.82891 1.26751 1.30055 1.22889 0.97615 0.84638 1.02050 1.19609 0.75628 0.86167 0.81549 1.90461 1.34624 1.68732 1.39556 1.41185 1.45214 1.24990 1.04564 1.19664 1.19543 1.00932 1.04351 0.87627 1.25232 0.96812 0.99639 0.95929 1.69310 1.40958 1.33048 1.06536 0.85747 0.78354 0.81103 0.78490 1.20270 1.20727 1.19418 1.17908 0.92965 0.92580 0.86461 1.20517 1.04589 1.01488 0.98531 1.20596 0.97648 0.98264 0.92321 1.20549 1.05152 1.01165 0.97036 1.20756 0.95664 0.95806 0.96955 1.20623 1.05676 1.04409 0.90877 0.93563 0.92861 0.92765 0.92228 0.93099 0.90717 0.88263 0.94675 0.93993 0.90093 0.90854 0.87737 0.87475 0.87805 0.87359 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.74 16 2 C -0.13 -2.09 5.10 -26.73 -0.14 -2.23 16 3 C -0.11 -2.22 4.02 -26.73 -0.11 -2.33 16 4 C 0.08 1.64 2.24 -27.88 -0.06 1.58 16 5 H 0.07 1.40 5.60 -51.93 -0.29 1.11 16 6 O -0.36 -7.65 9.61 -55.04 -0.53 -8.18 16 7 C 0.03 0.39 10.31 101.05 1.04 1.43 16 8 C 0.58 14.96 2.69 -10.98 -0.03 14.93 16 9 O -0.47 -13.75 16.09 -14.25 -0.23 -13.98 16 10 N -0.45 -11.42 2.76 -58.98 -0.16 -11.58 16 11 C -0.32 -8.23 9.27 -14.94 -0.14 -8.37 16 12 H 0.11 2.57 5.93 -52.48 -0.31 2.26 16 13 C 0.03 0.74 5.26 -17.49 -0.09 0.65 16 14 N -0.86 -22.92 7.72 55.49 0.43 -22.49 16 15 Si 0.94 20.26 29.56 -169.99 -5.03 15.24 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C 0.21 4.69 6.38 -83.69 -0.53 4.15 16 20 C -0.23 -4.60 8.32 -39.37 -0.33 -4.93 16 21 C -0.07 -1.20 10.04 -39.61 -0.40 -1.60 16 22 C -0.22 -3.60 10.04 -39.53 -0.40 -4.00 16 23 C -0.07 -1.26 10.04 -39.61 -0.40 -1.66 16 24 C -0.19 -3.90 9.27 -39.37 -0.37 -4.27 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.94 6.32 -51.93 -0.33 0.61 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.66 8.10 -51.93 -0.42 1.24 16 31 H 0.10 2.30 6.57 -51.93 -0.34 1.96 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.57 6.15 -51.93 -0.32 0.25 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.28 7.23 8.32 -40.82 -0.34 6.89 16 36 H 0.10 2.12 5.89 -52.49 -0.31 1.81 16 37 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.12 2.47 6.11 -52.48 -0.32 2.15 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -29.76 321.96 -7.82 -37.58 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.58 Total: 6.92 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.57 Total: -8.36 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.27 Total: -34.07 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.76 Total: -22.16 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.76 -7.82 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299182991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.295 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds