Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 C 1.53002 * 109.47491 * 181.50064 * 3 2 1 5 5 H 1.08997 * 109.47098 * 305.35323 * 4 3 2 6 6 O 1.42901 * 109.46574 * 65.35406 * 4 3 2 7 7 C 1.42906 * 113.99808 * 256.94505 * 6 4 3 8 8 C 1.50697 * 109.47201 * 185.35320 * 4 3 2 9 9 O 1.21279 * 120.00060 * 247.28115 * 8 4 3 10 10 N 1.34781 * 120.00169 * 67.28229 * 8 4 3 11 11 C 1.37139 * 119.99872 * 243.67565 * 10 8 4 12 12 H 1.08006 * 119.99234 * 190.46181 * 11 10 8 13 13 C 1.38883 * 120.00079 * 10.46553 * 11 10 8 14 14 N 1.31421 * 120.00166 * 8.42430 * 13 11 10 15 15 Si 1.86806 * 119.99700 * 188.42013 * 13 11 10 16 16 H 1.48505 * 109.46850 * 90.00028 * 15 13 11 17 17 H 1.48497 * 109.47291 * 209.99980 * 15 13 11 18 18 H 1.48495 * 109.47233 * 330.00253 * 15 13 11 19 19 C 1.39789 * 119.99676 * 63.67604 * 10 8 4 20 20 C 1.38962 * 120.07705 * 5.44410 * 19 10 8 21 21 C 1.38083 * 119.91632 * 179.74795 * 20 19 10 22 22 C 1.38304 * 120.08051 * 0.52469 * 21 20 19 23 23 C 1.38303 * 120.15847 * 359.72740 * 22 21 20 24 24 C 1.38086 * 120.07570 * 0.02562 * 23 22 21 25 25 H 1.08993 * 109.46963 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46990 * 299.99932 * 1 2 3 27 27 H 1.08995 * 109.47264 * 59.99558 * 1 2 3 28 28 H 1.09000 * 109.47336 * 239.99969 * 2 1 3 29 29 H 1.09002 * 109.47344 * 120.00052 * 2 1 3 30 30 H 1.09006 * 109.46781 * 61.50368 * 3 2 1 31 31 H 1.08995 * 109.47469 * 301.50394 * 3 2 1 32 32 H 1.09002 * 109.47193 * 294.10413 * 7 6 4 33 33 H 1.08997 * 109.46803 * 54.10136 * 7 6 4 34 34 H 1.09001 * 109.46837 * 174.10388 * 7 6 4 35 35 H 0.97002 * 119.99973 * 184.99868 * 14 13 11 36 36 H 1.08000 * 120.04245 * 359.97438 * 20 19 10 37 37 H 1.08008 * 119.96233 * 180.25507 * 21 20 19 38 38 H 1.08002 * 119.92220 * 179.70421 * 22 21 20 39 39 H 1.08001 * 119.96899 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.04177 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5696 1.4427 -0.0378 5 1 3.9535 0.8408 0.7859 6 8 4.0154 0.8916 -1.2786 7 6 4.4898 -0.4528 -1.1804 8 6 4.0752 2.8561 0.0947 9 8 4.6368 3.3892 -0.8387 10 7 3.9033 3.5278 1.2504 11 6 3.1238 4.6559 1.2785 12 1 3.1197 5.2876 2.1545 13 6 2.3399 4.9858 0.1806 14 7 2.2148 4.1382 -0.8160 15 14 1.4632 6.6342 0.1204 16 1 2.3464 7.6414 -0.5205 17 1 0.2115 6.5007 -0.6673 18 1 1.1350 7.0710 1.5012 19 6 4.5195 3.0747 2.4205 20 6 5.3990 1.9998 2.3731 21 6 6.0098 1.5583 3.5300 22 6 5.7389 2.1774 4.7367 23 6 4.8601 3.2440 4.7885 24 6 4.2495 3.6942 3.6347 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6989 1.9485 0.9032 31 1 1.6549 1.9641 -0.8761 32 1 5.3952 -0.4752 -0.5738 33 1 3.7253 -1.0748 -0.7151 34 1 4.7110 -0.8338 -2.1775 35 1 1.7275 4.3964 -1.6140 36 1 5.6073 1.5128 1.4319 37 1 6.6967 0.7255 3.4933 38 1 6.2145 1.8268 5.6408 39 1 4.6504 3.7250 5.7325 40 1 3.5630 4.5270 3.6758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299182991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = -54.123836 kcal Electronic energy + Delta-G solvation = -22821.737509 eV Core-core repulsion = 19601.772182 eV Total energy + Delta-G solvation = -3219.965327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59691 -39.52615 -38.53167 -36.43054 -35.31681 -34.04515 -31.82727 -30.84124 -30.04818 -27.47356 -27.25695 -25.34067 -23.44496 -22.92791 -22.01814 -21.11562 -19.23312 -18.59114 -17.77103 -17.21959 -16.70531 -16.57124 -16.16570 -15.88074 -15.56166 -15.06732 -14.93132 -14.61720 -14.32515 -14.10032 -13.88644 -13.67833 -13.52253 -13.14804 -13.07983 -12.93755 -12.67693 -12.34570 -12.21565 -12.14581 -11.99569 -11.89313 -11.84234 -11.61404 -11.38585 -10.92141 -10.55024 -10.09611 -9.68510 -8.66285 -8.38259 -5.89219 0.67685 0.75643 1.34771 1.41949 1.50403 1.69758 2.21214 2.52119 2.94578 3.22880 3.29838 3.89661 3.99483 4.02367 4.16381 4.22181 4.27167 4.35331 4.47605 4.51656 4.56941 4.74890 4.78563 4.79603 4.84402 4.87541 4.97683 5.06618 5.13382 5.30070 5.32320 5.35549 5.38935 5.64103 5.67958 5.75015 5.86548 5.91683 6.23963 6.35035 6.74711 7.06757 7.39418 7.67606 8.66929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.010030 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.724146 B = 2790.999298 C = 4232.827424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.095 4.095 4 C 0.087 3.913 5 H 0.087 0.913 6 O -0.392 6.392 7 C 0.016 3.984 8 C 0.579 3.421 9 O -0.528 6.528 10 N -0.481 5.481 11 C -0.336 4.336 12 H 0.110 0.890 13 C -0.023 4.023 14 N -0.887 5.887 15 Si 0.997 3.003 16 H -0.287 1.287 17 H -0.280 1.280 18 H -0.252 1.252 19 C 0.178 3.822 20 C -0.238 4.238 21 C -0.067 4.067 22 C -0.195 4.195 23 C -0.069 4.069 24 C -0.207 4.207 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.271 0.729 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -9.630 7.586 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.133 4.133 4 C 0.025 3.975 5 H 0.104 0.896 6 O -0.310 6.310 7 C -0.080 4.080 8 C 0.371 3.629 9 O -0.401 6.401 10 N -0.190 5.190 11 C -0.461 4.461 12 H 0.128 0.872 13 C -0.224 4.224 14 N -0.526 5.526 15 Si 0.821 3.179 16 H -0.213 1.213 17 H -0.205 1.205 18 H -0.176 1.176 19 C 0.074 3.926 20 C -0.261 4.261 21 C -0.085 4.085 22 C -0.216 4.216 23 C -0.088 4.088 24 C -0.229 4.229 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.221 -9.222 6.482 11.274 hybrid contribution -0.421 1.056 -0.558 1.266 sum -0.200 -8.166 5.925 10.091 Atomic orbital electron populations 1.21676 0.94726 1.02255 1.01297 1.21642 0.97066 0.95039 1.02041 1.21656 0.91581 0.97445 1.02594 1.22175 0.96598 0.91552 0.87136 0.89571 1.88012 1.83253 1.29745 1.30032 1.23206 0.98541 0.82268 1.03992 1.20350 0.74052 0.87523 0.80949 1.90397 1.37552 1.70592 1.41567 1.41220 1.46617 1.25889 1.05322 1.19938 1.19507 1.02000 1.04692 0.87249 1.26089 0.97780 1.02663 0.95822 1.69432 1.42260 1.34180 1.06757 0.84836 0.76953 0.77037 0.79065 1.21333 1.20527 1.17557 1.18385 0.93684 0.94032 0.86496 1.20696 1.04664 1.01116 0.99655 1.21055 0.97190 0.98897 0.91371 1.21126 1.02969 0.99267 0.98215 1.21190 0.94668 0.95787 0.97150 1.20809 1.06272 1.04425 0.91436 0.90476 0.93308 0.93758 0.91360 0.91306 0.93279 0.91550 0.93754 0.91821 0.87950 0.91772 0.88575 0.83765 0.83514 0.83771 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.25 16 2 C -0.12 -3.80 5.10 30.59 0.16 -3.64 16 3 C -0.09 -4.05 4.02 30.60 0.12 -3.93 16 4 C 0.09 3.89 2.24 29.85 0.07 3.96 16 5 H 0.09 3.46 5.60 -2.39 -0.01 3.45 16 6 O -0.39 -17.06 9.61 -130.04 -1.25 -18.31 16 7 C 0.02 0.47 10.31 113.37 1.17 1.64 16 8 C 0.58 31.44 2.69 87.66 0.24 31.67 16 9 O -0.53 -33.34 16.09 15.91 0.26 -33.08 16 10 N -0.48 -25.33 2.76 -458.89 -1.26 -26.59 16 11 C -0.34 -18.17 9.27 84.02 0.78 -17.39 16 12 H 0.11 5.56 5.93 -2.91 -0.02 5.54 16 13 C -0.02 -1.22 5.26 84.91 0.45 -0.77 16 14 N -0.89 -50.44 7.72 21.65 0.17 -50.27 16 15 Si 1.00 43.44 29.56 68.60 2.03 45.47 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 19 C 0.18 8.06 6.38 38.22 0.24 8.30 16 20 C -0.24 -9.39 8.32 22.41 0.19 -9.20 16 21 C -0.07 -2.04 10.04 22.25 0.22 -1.81 16 22 C -0.20 -5.42 10.04 22.30 0.22 -5.20 16 23 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 24 C -0.21 -8.20 9.27 22.41 0.21 -8.00 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 2.04 6.32 -2.39 -0.02 2.02 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.30 8.10 -2.38 -0.02 2.28 16 31 H 0.07 3.28 6.57 -2.39 -0.02 3.27 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.59 6.15 -2.39 -0.01 1.57 16 34 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.27 15.09 8.32 -92.71 -0.77 14.31 16 36 H 0.10 3.90 5.89 -2.91 -0.02 3.89 16 37 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.12 4.67 6.11 -2.91 -0.02 4.65 16 Total: -1.00 -70.42 321.96 5.97 -64.46 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 1.03 Total: 27.87 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.00 Total: -9.53 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.10 Total: -76.87 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.99 Total: -51.39 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.42 5.97 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299182991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.332 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds