Wall clock time and date at job start Mon Mar 30 2020 01:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 C 1.53005 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46806 * 55.00165 * 4 3 2 6 6 O 1.42894 * 109.47271 * 294.99670 * 4 3 2 7 7 C 1.42893 * 113.99861 * 149.99979 * 6 4 3 8 8 C 1.50698 * 109.46700 * 174.99812 * 4 3 2 9 9 O 1.21287 * 119.99791 * 114.72138 * 8 4 3 10 10 N 1.34775 * 120.00107 * 295.00283 * 8 4 3 11 11 C 1.37135 * 120.00015 * 354.45303 * 10 8 4 12 12 H 1.07993 * 120.00147 * 336.22969 * 11 10 8 13 13 C 1.38895 * 120.00204 * 156.23549 * 11 10 8 14 14 N 1.31426 * 119.99618 * 345.02347 * 13 11 10 15 15 Si 1.86792 * 120.00158 * 165.02065 * 13 11 10 16 16 H 1.48496 * 109.47321 * 59.99750 * 15 13 11 17 17 H 1.48500 * 109.47412 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47010 * 299.99914 * 15 13 11 19 19 C 1.39787 * 119.99889 * 174.45382 * 10 8 4 20 20 C 1.38966 * 120.08057 * 112.11199 * 19 10 8 21 21 C 1.38080 * 119.92222 * 179.78746 * 20 19 10 22 22 C 1.38303 * 120.07914 * 0.46813 * 21 20 19 23 23 C 1.38307 * 120.15760 * 359.78652 * 22 21 20 24 24 C 1.38086 * 120.07576 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46726 * 299.99874 * 1 2 3 26 26 H 1.09001 * 109.46748 * 59.99526 * 1 2 3 27 27 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46957 * 239.99635 * 2 1 3 29 29 H 1.09001 * 109.47273 * 120.00444 * 2 1 3 30 30 H 1.08996 * 109.46814 * 60.00262 * 3 2 1 31 31 H 1.08993 * 109.46738 * 300.00102 * 3 2 1 32 32 H 1.08997 * 109.47111 * 60.00235 * 7 6 4 33 33 H 1.09003 * 109.47641 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47423 * 300.00388 * 7 6 4 35 35 H 0.97000 * 119.99847 * 185.01957 * 14 13 11 36 36 H 1.08004 * 120.03279 * 0.02562 * 20 19 10 37 37 H 1.07998 * 119.95780 * 180.23015 * 21 20 19 38 38 H 1.08003 * 119.92406 * 179.76306 * 22 21 20 39 39 H 1.08001 * 119.96125 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.03631 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5702 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0459 0.8732 1.2219 7 6 5.3055 0.2092 1.1018 8 6 4.0726 2.8577 -0.1232 9 8 4.6885 3.3647 0.7904 10 7 3.8326 3.5621 -1.2469 11 6 3.2320 2.9564 -2.3207 12 1 3.2935 1.8848 -2.4403 13 6 2.5447 3.7210 -3.2546 14 7 2.2141 4.9614 -2.9729 15 14 2.0902 2.9864 -4.9108 16 1 1.2179 1.8024 -4.7046 17 1 1.3670 3.9998 -5.7202 18 1 3.3251 2.5730 -5.6246 19 6 4.1958 4.9100 -1.3179 20 6 5.2160 5.3125 -2.1713 21 6 5.5693 6.6455 -2.2420 22 6 4.9156 7.5783 -1.4576 23 6 3.9034 7.1807 -0.6031 24 6 3.5415 5.8500 -0.5309 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 6.0597 0.9193 0.7626 33 1 5.5969 -0.1955 2.0711 34 1 5.2207 -0.6031 0.3800 35 1 1.6716 5.4718 -3.5943 36 1 5.7294 4.5840 -2.7814 37 1 6.3595 6.9594 -2.9079 38 1 5.1965 8.6198 -1.5121 39 1 3.3953 7.9118 0.0083 40 1 2.7513 5.5402 0.1369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299182993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:46 Heat of formation + Delta-G solvation = -54.602565 kcal Electronic energy + Delta-G solvation = -22541.833944 eV Core-core repulsion = 19321.847857 eV Total energy + Delta-G solvation = -3219.986087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63336 -37.96222 -36.41690 -34.85593 -34.10297 -31.72064 -29.93619 -29.89108 -28.29840 -25.90013 -25.10325 -24.00025 -21.58641 -21.36072 -20.60289 -19.22366 -17.90091 -16.66878 -15.94029 -15.41341 -15.08388 -14.65456 -14.58929 -14.35103 -14.16000 -13.79986 -13.24381 -13.11744 -12.71132 -12.58258 -12.39845 -11.95060 -11.67354 -11.57180 -11.49909 -11.20365 -11.05749 -10.90575 -10.63991 -10.59328 -10.48364 -10.37344 -10.19450 -10.06629 -9.79643 -9.30867 -8.29351 -8.20739 -7.87161 -7.40845 -6.34045 -4.10916 2.44395 2.49385 3.04885 3.14621 3.15198 3.68418 3.96925 4.21288 4.71083 4.80496 5.04635 5.35378 5.45952 5.53010 5.60905 5.73691 5.78742 5.83401 5.88809 5.95095 6.03592 6.05429 6.13154 6.17552 6.25495 6.36247 6.43851 6.54205 6.55871 6.68330 6.80636 7.00035 7.02986 7.26017 7.33659 7.44875 7.60102 7.62931 7.75267 7.97342 8.40050 8.95031 9.31978 9.75854 10.56488 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.008253 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.884072 B = 3391.974152 C = 4581.715991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.112 4.112 4 C 0.097 3.903 5 H 0.074 0.926 6 O -0.367 6.367 7 C 0.035 3.965 8 C 0.447 3.553 9 O -0.579 6.579 10 N -0.409 5.409 11 C -0.357 4.357 12 H 0.098 0.902 13 C 0.051 3.949 14 N -0.843 5.843 15 Si 0.916 3.084 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.237 3.763 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.151 4.151 23 C -0.118 4.118 24 C -0.081 4.081 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.274 0.726 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 -4.515 0.607 4.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.149 4.149 4 C 0.036 3.964 5 H 0.091 0.909 6 O -0.284 6.284 7 C -0.062 4.062 8 C 0.236 3.764 9 O -0.463 6.463 10 N -0.126 5.126 11 C -0.483 4.483 12 H 0.116 0.884 13 C -0.159 4.159 14 N -0.477 5.477 15 Si 0.742 3.258 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.146 3.854 20 C -0.145 4.145 21 C -0.139 4.139 22 C -0.169 4.169 23 C -0.137 4.137 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.288 -4.084 1.120 4.244 hybrid contribution -0.211 -0.272 -1.386 1.428 sum 0.077 -4.356 -0.266 4.364 Atomic orbital electron populations 1.21747 0.96228 1.00797 1.01911 1.21461 0.95434 0.97077 1.01595 1.21682 0.91313 0.97217 1.04711 1.21792 0.95863 0.91839 0.86914 0.90862 1.87890 1.35883 1.72406 1.32218 1.22697 0.86561 0.95467 1.01481 1.20967 0.83929 0.89568 0.81892 1.90581 1.44313 1.71950 1.39414 1.41332 1.51778 1.07044 1.12471 1.19417 1.34092 0.93505 1.01278 0.88415 1.25286 0.95547 0.95474 0.99550 1.69865 1.32636 1.08953 1.36207 0.86169 0.78882 0.78814 0.81965 1.19567 1.20762 1.19740 1.17228 0.90865 0.84243 0.93082 1.20940 0.97672 0.95595 1.00329 1.20670 1.00258 0.93090 0.99891 1.20726 0.98832 0.98163 0.99213 1.20701 0.98119 0.95312 0.99551 1.20795 0.97771 0.92300 0.99185 0.92967 0.92567 0.93382 0.92473 0.92003 0.91816 0.87311 0.94000 0.90224 0.94734 0.91535 0.87392 0.87628 0.87768 0.87553 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.79 5.83 -26.73 -0.16 -1.94 16 3 C -0.11 -2.08 4.72 -26.73 -0.13 -2.20 16 4 C 0.10 1.96 1.72 -27.88 -0.05 1.91 16 5 H 0.07 1.39 6.84 -51.93 -0.36 1.04 16 6 O -0.37 -7.25 9.42 -55.09 -0.52 -7.77 16 7 C 0.03 0.56 10.81 101.05 1.09 1.65 16 8 C 0.45 10.88 6.85 -10.99 -0.08 10.81 16 9 O -0.58 -15.77 16.27 -14.30 -0.23 -16.01 16 10 N -0.41 -10.10 2.68 -58.98 -0.16 -10.25 16 11 C -0.36 -8.49 6.97 -14.94 -0.10 -8.59 16 12 H 0.10 2.17 6.38 -52.49 -0.34 1.84 16 13 C 0.05 1.20 5.15 -17.48 -0.09 1.11 16 14 N -0.84 -21.22 11.00 55.49 0.61 -20.61 16 15 Si 0.92 18.65 29.58 -169.99 -5.03 13.62 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 C 0.24 5.88 2.55 -83.69 -0.21 5.67 16 20 C -0.13 -2.90 9.68 -39.37 -0.38 -3.28 16 21 C -0.12 -2.44 10.04 -39.62 -0.40 -2.84 16 22 C -0.15 -2.94 10.04 -39.53 -0.40 -3.34 16 23 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 24 C -0.08 -1.94 8.83 -39.37 -0.35 -2.29 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.92 7.82 -51.93 -0.41 0.52 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.11 2.21 6.07 -51.93 -0.32 1.89 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 36 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 37 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 39 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -28.88 334.21 -7.60 -36.49 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.04 Total: 7.34 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.27 Total: -7.84 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.45 Total: -30.87 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.75 Total: -23.78 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.88 -7.60 -36.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299182993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.114 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds