Wall clock time and date at job start Mon Mar 30 2020 01:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 C 1.53005 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46806 * 55.00165 * 4 3 2 6 6 O 1.42894 * 109.47271 * 294.99670 * 4 3 2 7 7 C 1.42893 * 113.99861 * 149.99979 * 6 4 3 8 8 C 1.50698 * 109.46700 * 174.99812 * 4 3 2 9 9 O 1.21287 * 119.99791 * 114.72138 * 8 4 3 10 10 N 1.34775 * 120.00107 * 295.00283 * 8 4 3 11 11 C 1.37135 * 120.00015 * 354.45303 * 10 8 4 12 12 H 1.07993 * 120.00147 * 336.22969 * 11 10 8 13 13 C 1.38895 * 120.00204 * 156.23549 * 11 10 8 14 14 N 1.31426 * 119.99618 * 345.02347 * 13 11 10 15 15 Si 1.86792 * 120.00158 * 165.02065 * 13 11 10 16 16 H 1.48496 * 109.47321 * 59.99750 * 15 13 11 17 17 H 1.48500 * 109.47412 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47010 * 299.99914 * 15 13 11 19 19 C 1.39787 * 119.99889 * 174.45382 * 10 8 4 20 20 C 1.38966 * 120.08057 * 112.11199 * 19 10 8 21 21 C 1.38080 * 119.92222 * 179.78746 * 20 19 10 22 22 C 1.38303 * 120.07914 * 0.46813 * 21 20 19 23 23 C 1.38307 * 120.15760 * 359.78652 * 22 21 20 24 24 C 1.38086 * 120.07576 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46726 * 299.99874 * 1 2 3 26 26 H 1.09001 * 109.46748 * 59.99526 * 1 2 3 27 27 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46957 * 239.99635 * 2 1 3 29 29 H 1.09001 * 109.47273 * 120.00444 * 2 1 3 30 30 H 1.08996 * 109.46814 * 60.00262 * 3 2 1 31 31 H 1.08993 * 109.46738 * 300.00102 * 3 2 1 32 32 H 1.08997 * 109.47111 * 60.00235 * 7 6 4 33 33 H 1.09003 * 109.47641 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47423 * 300.00388 * 7 6 4 35 35 H 0.97000 * 119.99847 * 185.01957 * 14 13 11 36 36 H 1.08004 * 120.03279 * 0.02562 * 20 19 10 37 37 H 1.07998 * 119.95780 * 180.23015 * 21 20 19 38 38 H 1.08003 * 119.92406 * 179.76306 * 22 21 20 39 39 H 1.08001 * 119.96125 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.03631 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5702 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0459 0.8732 1.2219 7 6 5.3055 0.2092 1.1018 8 6 4.0726 2.8577 -0.1232 9 8 4.6885 3.3647 0.7904 10 7 3.8326 3.5621 -1.2469 11 6 3.2320 2.9564 -2.3207 12 1 3.2935 1.8848 -2.4403 13 6 2.5447 3.7210 -3.2546 14 7 2.2141 4.9614 -2.9729 15 14 2.0902 2.9864 -4.9108 16 1 1.2179 1.8024 -4.7046 17 1 1.3670 3.9998 -5.7202 18 1 3.3251 2.5730 -5.6246 19 6 4.1958 4.9100 -1.3179 20 6 5.2160 5.3125 -2.1713 21 6 5.5693 6.6455 -2.2420 22 6 4.9156 7.5783 -1.4576 23 6 3.9034 7.1807 -0.6031 24 6 3.5415 5.8500 -0.5309 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 6.0597 0.9193 0.7626 33 1 5.5969 -0.1955 2.0711 34 1 5.2207 -0.6031 0.3800 35 1 1.6716 5.4718 -3.5943 36 1 5.7294 4.5840 -2.7814 37 1 6.3595 6.9594 -2.9079 38 1 5.1965 8.6198 -1.5121 39 1 3.3953 7.9118 0.0083 40 1 2.7513 5.5402 0.1369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299182993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:45 Heat of formation + Delta-G solvation = -69.252318 kcal Electronic energy + Delta-G solvation = -22542.469205 eV Core-core repulsion = 19321.847857 eV Total energy + Delta-G solvation = -3220.621347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40512 -39.58766 -38.07857 -36.66972 -35.48077 -33.57580 -31.58942 -31.46428 -29.87213 -27.22893 -26.94851 -25.50751 -23.28953 -22.99874 -21.96939 -21.03965 -19.62971 -18.38385 -17.51179 -17.13553 -16.72736 -16.33282 -16.25814 -15.89670 -15.56404 -15.41090 -14.82707 -14.67618 -14.23610 -14.12394 -14.00309 -13.50768 -13.31997 -13.13083 -12.93038 -12.82480 -12.70039 -12.29046 -12.23227 -12.09092 -12.02023 -11.88974 -11.77957 -11.47275 -11.35656 -11.05901 -10.10153 -9.98903 -9.58588 -9.18711 -8.15177 -5.98869 0.73941 0.78319 1.41699 1.48469 1.55872 1.88180 2.26518 2.63917 3.04066 3.09551 3.28184 3.93235 4.07101 4.14412 4.21378 4.26637 4.31279 4.38180 4.42081 4.53325 4.57231 4.74275 4.78783 4.80460 4.86427 4.87614 5.02784 5.09672 5.14819 5.31870 5.32641 5.39660 5.43335 5.57164 5.64983 5.76392 5.83551 5.99490 6.15162 6.24990 6.58440 7.09422 7.47969 7.91291 8.74121 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.008253 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.884072 B = 3391.974152 C = 4581.715991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.104 4.104 4 C 0.106 3.894 5 H 0.088 0.912 6 O -0.383 6.383 7 C 0.029 3.971 8 C 0.429 3.571 9 O -0.622 6.622 10 N -0.413 5.413 11 C -0.366 4.366 12 H 0.110 0.890 13 C 0.013 3.987 14 N -0.869 5.869 15 Si 0.978 3.022 16 H -0.256 1.256 17 H -0.288 1.288 18 H -0.270 1.270 19 C 0.208 3.792 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -5.090 -0.583 5.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.142 4.142 4 C 0.045 3.955 5 H 0.105 0.895 6 O -0.301 6.301 7 C -0.068 4.068 8 C 0.220 3.780 9 O -0.509 6.509 10 N -0.130 5.130 11 C -0.492 4.492 12 H 0.128 0.872 13 C -0.193 4.193 14 N -0.503 5.503 15 Si 0.802 3.198 16 H -0.180 1.180 17 H -0.213 1.213 18 H -0.195 1.195 19 C 0.117 3.883 20 C -0.169 4.169 21 C -0.134 4.134 22 C -0.163 4.163 23 C -0.137 4.137 24 C -0.130 4.130 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.039 0.961 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.376 -4.674 -0.076 4.689 hybrid contribution -0.184 -0.009 -0.977 0.994 sum 0.192 -4.683 -1.053 4.804 Atomic orbital electron populations 1.21732 0.94844 1.02312 1.01561 1.21415 0.96587 0.94296 1.02444 1.21593 0.90317 0.99505 1.02769 1.21743 0.96582 0.89471 0.87708 0.89465 1.87862 1.37441 1.72596 1.32157 1.22936 0.84505 0.95426 1.03885 1.21805 0.83599 0.91271 0.81321 1.90522 1.46344 1.73311 1.40673 1.41581 1.51260 1.07362 1.12750 1.19767 1.34151 0.94189 1.01093 0.87221 1.26055 0.95242 0.95719 1.02275 1.70028 1.33172 1.10174 1.36966 0.85204 0.78652 0.78294 0.77680 1.18049 1.21321 1.19467 1.17569 0.92030 0.84514 0.94189 1.21096 0.98004 0.97158 1.00674 1.21122 1.00551 0.91925 0.99852 1.21207 0.97353 1.00186 0.97516 1.21085 0.98399 0.94442 0.99819 1.20808 0.98289 0.94047 0.99893 0.93180 0.93145 0.90881 0.91200 0.91454 0.93678 0.89266 0.96101 0.87628 0.91861 0.91940 0.87877 0.84006 0.83374 0.84776 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.11 -3.17 5.83 30.60 0.18 -2.99 16 3 C -0.10 -3.93 4.72 30.60 0.14 -3.78 16 4 C 0.11 4.35 1.72 29.85 0.05 4.40 16 5 H 0.09 3.28 6.84 -2.39 -0.02 3.26 16 6 O -0.38 -15.16 9.42 -129.99 -1.22 -16.38 16 7 C 0.03 0.89 10.81 113.37 1.23 2.12 16 8 C 0.43 21.77 6.85 87.66 0.60 22.37 16 9 O -0.62 -35.60 16.27 15.93 0.26 -35.34 16 10 N -0.41 -21.16 2.68 -458.90 -1.23 -22.39 16 11 C -0.37 -17.70 6.97 84.02 0.59 -17.11 16 12 H 0.11 4.87 6.38 -2.91 -0.02 4.85 16 13 C 0.01 0.63 5.15 84.91 0.44 1.07 16 14 N -0.87 -44.51 11.00 21.65 0.24 -44.27 16 15 Si 0.98 37.77 29.58 68.60 2.03 39.80 16 16 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 17 H -0.29 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 19 C 0.21 10.66 2.55 38.22 0.10 10.75 16 20 C -0.15 -6.98 9.68 22.41 0.22 -6.76 16 21 C -0.12 -4.51 10.04 22.25 0.22 -4.29 16 22 C -0.14 -5.29 10.04 22.30 0.22 -5.07 16 23 C -0.12 -4.89 10.04 22.25 0.22 -4.67 16 24 C -0.11 -5.51 8.83 22.41 0.20 -5.31 16 25 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.88 7.82 -2.39 -0.02 1.86 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 3.71 6.07 -2.39 -0.01 3.70 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.06 1.59 8.08 -2.39 -0.02 1.58 16 35 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 36 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.08 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -64.88 334.21 6.20 -58.68 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 1.01 Total: 32.16 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.12 Total: -12.26 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.99 Total: -66.66 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.97 Total: -51.72 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -64.88 6.20 -58.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299182993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.576 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds