Wall clock time and date at job start Mon Mar 30 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46903 * 2 1 4 4 H 1.09002 * 109.47320 * 54.38683 * 3 2 1 5 5 N 1.46904 * 109.47206 * 174.38326 * 3 2 1 6 6 C 1.46896 * 111.00096 * 273.66920 * 5 3 2 7 7 C 1.50699 * 109.47082 * 185.20260 * 6 5 3 8 8 H 1.08004 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99340 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00616 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46839 * 60.00082 * 11 9 7 13 13 H 1.48499 * 109.47314 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47376 * 300.00316 * 11 9 7 15 15 C 1.50697 * 109.47165 * 294.38213 * 3 2 1 16 16 C 1.38251 * 119.94825 * 279.73120 * 15 3 2 17 17 C 1.38197 * 120.11729 * 179.77875 * 16 15 3 18 18 C 1.38709 * 120.06031 * 0.55659 * 17 16 15 19 19 C 1.38968 * 119.82393 * 359.62824 * 18 17 16 20 20 C 1.38199 * 119.94383 * 100.00015 * 15 3 2 21 21 O 1.36108 * 120.78430 * 180.26626 * 19 18 17 22 22 C 1.43175 * 116.71505 * 342.81418 * 21 19 18 23 23 C 1.53468 * 108.25073 * 46.16239 * 22 21 19 24 24 O 1.36110 * 119.39228 * 179.54003 * 18 17 16 25 25 H 1.09004 * 109.47510 * 296.52646 * 1 2 3 26 26 H 1.08999 * 109.47299 * 56.52826 * 1 2 3 27 27 H 1.09003 * 109.46859 * 176.52598 * 1 2 3 28 28 H 1.09002 * 109.47277 * 240.00188 * 2 1 3 29 29 H 1.09000 * 109.47433 * 119.99669 * 2 1 3 30 30 H 1.00907 * 110.99660 * 37.62522 * 5 3 2 31 31 H 1.09002 * 109.47234 * 305.20178 * 6 5 3 32 32 H 1.08998 * 109.47043 * 65.20584 * 6 5 3 33 33 H 0.97004 * 119.99689 * 180.02562 * 10 9 7 34 34 H 1.08000 * 119.94325 * 0.02562 * 16 15 3 35 35 H 1.07996 * 119.97202 * 180.28969 * 17 16 15 36 36 H 1.08002 * 119.96179 * 359.97438 * 20 15 3 37 37 H 1.09000 * 109.70716 * 165.85358 * 22 21 19 38 38 H 1.09005 * 109.70478 * 286.47504 * 22 21 19 39 39 H 1.09000 * 109.70918 * 59.94957 * 23 22 21 40 40 H 1.09000 * 109.70764 * 180.57513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9846 0.8355 5 7 3.5027 1.4448 0.1356 6 6 3.9005 1.4026 1.5490 7 6 5.3980 1.5349 1.6536 8 1 5.9946 1.6403 0.7594 9 6 6.0067 1.5214 2.8906 10 7 5.2802 1.3926 3.9794 11 14 7.8629 1.6847 3.0202 12 1 8.2889 2.9768 2.4249 13 1 8.2651 1.6421 4.4491 14 1 8.5105 0.5658 2.2896 15 6 1.6544 2.1116 -1.2941 16 6 2.4018 1.8890 -2.4356 17 6 2.0487 2.4972 -3.6252 18 6 0.9497 3.3420 -3.6742 19 6 0.2006 3.5689 -2.5259 20 6 0.5575 2.9512 -1.3364 21 8 -0.8846 4.3900 -2.5530 22 6 -0.9909 5.2796 -3.6698 23 6 -0.7024 4.4821 -4.9488 24 8 0.6197 3.9413 -4.8509 25 1 -0.3634 0.4590 0.9195 26 1 -0.3634 0.5668 -0.8572 27 1 -0.3633 -1.0258 -0.0623 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9147 0.6809 -0.3791 31 1 3.4249 2.2239 2.0850 32 1 3.5882 0.4542 1.9861 33 1 5.7084 1.3834 4.8498 34 1 3.2608 1.2354 -2.3986 35 1 2.6314 2.3179 -4.5166 36 1 -0.0224 3.1266 -0.4423 37 1 -1.9978 5.6946 -3.7146 38 1 -0.2646 6.0860 -3.5677 39 1 -1.4247 3.6718 -5.0475 40 1 -0.7671 5.1406 -5.8150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299635303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:25 Heat of formation + Delta-G solvation = -56.266905 kcal Electronic energy + Delta-G solvation = -21385.122127 eV Core-core repulsion = 18165.063870 eV Total energy + Delta-G solvation = -3220.058258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18380 -38.53625 -37.21257 -35.83423 -33.14272 -31.44961 -31.05376 -30.39490 -28.58543 -26.70360 -25.02126 -23.91047 -22.55801 -21.68995 -21.40747 -19.76844 -18.54899 -17.21373 -16.98149 -16.34760 -15.42620 -15.26774 -14.92677 -14.58251 -14.41885 -14.36573 -14.00714 -13.71313 -13.65269 -13.20724 -13.06907 -12.41590 -12.20962 -11.78295 -11.68121 -11.54158 -11.18512 -11.12973 -11.02191 -10.72815 -10.69028 -10.65751 -10.44502 -10.27706 -9.85253 -9.21243 -8.47206 -8.39795 -7.81925 -7.28716 -6.01059 -4.02762 1.49674 1.52533 3.01640 3.20534 3.35399 3.39197 3.42540 3.90574 4.12918 4.44910 4.63558 4.70697 4.73158 4.98593 5.11048 5.24995 5.27507 5.34673 5.36728 5.39761 5.49769 5.57485 5.65058 5.82294 5.93169 6.05994 6.15673 6.24065 6.30281 6.34386 6.45499 6.57202 6.81415 6.91328 6.99708 7.25341 7.41126 7.49628 7.80750 8.14169 8.40304 8.59892 9.05897 9.61935 11.09766 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.003823 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.410515 B = 7321.899921 C = 7766.010831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.124 3.876 4 H 0.082 0.918 5 N -0.680 5.680 6 C 0.195 3.805 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.899 3.101 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.042 4.042 16 C -0.091 4.091 17 C -0.115 4.115 18 C 0.034 3.966 19 C 0.046 3.954 20 C -0.111 4.111 21 O -0.310 6.310 22 C 0.021 3.979 23 C 0.022 3.978 24 O -0.311 6.311 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.329 0.671 31 H 0.027 0.973 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 3.090 -15.950 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.013 3.987 4 H 0.100 0.900 5 N -0.309 5.309 6 C 0.069 3.931 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.727 3.273 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.043 4.043 16 C -0.109 4.109 17 C -0.134 4.134 18 C -0.010 4.010 19 C 0.001 3.999 20 C -0.130 4.130 21 O -0.225 6.225 22 C -0.055 4.055 23 C -0.054 4.054 24 O -0.226 6.226 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.783 3.815 -15.797 21.309 hybrid contribution 0.624 -0.576 0.309 0.904 sum -13.159 3.239 -15.488 20.580 Atomic orbital electron populations 1.21759 0.96026 1.01087 1.01810 1.22246 0.96267 0.97834 1.02275 1.20497 0.91234 0.93579 0.93435 0.90018 1.60739 1.03980 1.50165 1.16021 1.19586 0.96036 0.95554 0.81915 1.21144 0.91825 1.49560 0.92555 0.91975 1.24980 0.98464 0.95405 0.95719 1.69955 1.35472 1.50631 0.97785 0.86549 0.85291 0.78720 0.76764 1.20183 1.21400 1.20277 1.19737 0.93012 0.95747 0.95801 1.20754 0.99388 0.99958 0.90805 1.20403 0.96688 0.96968 0.99300 1.18822 0.98827 0.99211 0.84139 1.18776 0.90789 0.96594 0.93732 1.20270 0.98244 0.99145 0.95322 1.86289 1.41337 1.49795 1.45067 1.23567 1.04400 0.91920 0.85584 1.23549 0.83942 0.98608 0.99311 1.86285 1.31396 1.72072 1.32856 0.92816 0.92604 0.93304 0.92056 0.91224 0.85378 0.95451 0.99347 0.92896 0.84891 0.85233 0.85176 0.86475 0.90668 0.90838 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.72 37.16 0.36 -1.61 16 2 C -0.15 -2.25 5.37 -26.73 -0.14 -2.39 16 3 C 0.12 2.15 2.26 -68.86 -0.16 2.00 16 4 H 0.08 1.52 7.55 -51.93 -0.39 1.13 16 5 N -0.68 -14.14 5.63 -109.22 -0.62 -14.76 16 6 C 0.20 5.03 5.27 -4.98 -0.03 5.00 16 7 C -0.51 -14.43 9.36 -34.44 -0.32 -14.75 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 11 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.04 -0.67 4.25 -104.63 -0.44 -1.12 16 16 C -0.09 -1.37 9.32 -39.59 -0.37 -1.74 16 17 C -0.11 -1.64 9.96 -39.42 -0.39 -2.03 16 18 C 0.03 0.50 6.49 -39.14 -0.25 0.25 16 19 C 0.05 0.68 6.49 -39.14 -0.25 0.43 16 20 C -0.11 -1.71 8.58 -39.42 -0.34 -2.05 16 21 O -0.31 -4.16 10.42 -32.87 -0.34 -4.51 16 22 C 0.02 0.19 7.26 37.40 0.27 0.46 16 23 C 0.02 0.19 7.26 37.40 0.27 0.46 16 24 O -0.31 -4.05 10.42 -32.87 -0.34 -4.39 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.17 7.52 -51.93 -0.39 0.78 16 30 H 0.33 6.42 7.92 -39.29 -0.31 6.11 16 31 H 0.03 0.77 7.92 -51.93 -0.41 0.35 16 32 H -0.01 -0.30 7.56 -51.93 -0.39 -0.70 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.13 1.91 7.27 -52.49 -0.38 1.53 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 1.89 8.03 -52.49 -0.42 1.47 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -31.61 329.19 -8.49 -40.10 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.97 Total: 3.52 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.89 Total: -15.60 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.12 Total: -40.82 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.68 Total: -8.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.61 -8.49 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.170 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds