Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46903 * 2 1 4 4 H 1.09002 * 109.47320 * 54.38683 * 3 2 1 5 5 N 1.46904 * 109.47206 * 174.38326 * 3 2 1 6 6 C 1.46896 * 111.00096 * 273.66920 * 5 3 2 7 7 C 1.50699 * 109.47082 * 185.20260 * 6 5 3 8 8 H 1.08004 * 119.99968 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99340 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00616 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46839 * 60.00082 * 11 9 7 13 13 H 1.48499 * 109.47314 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47376 * 300.00316 * 11 9 7 15 15 C 1.50697 * 109.47165 * 294.38213 * 3 2 1 16 16 C 1.38251 * 119.94825 * 279.73120 * 15 3 2 17 17 C 1.38197 * 120.11729 * 179.77875 * 16 15 3 18 18 C 1.38709 * 120.06031 * 0.55659 * 17 16 15 19 19 C 1.38968 * 119.82393 * 359.62824 * 18 17 16 20 20 C 1.38199 * 119.94383 * 100.00015 * 15 3 2 21 21 O 1.36108 * 120.78430 * 180.26626 * 19 18 17 22 22 C 1.43175 * 116.71505 * 342.81418 * 21 19 18 23 23 C 1.53468 * 108.25073 * 46.16239 * 22 21 19 24 24 O 1.36110 * 119.39228 * 179.54003 * 18 17 16 25 25 H 1.09004 * 109.47510 * 296.52646 * 1 2 3 26 26 H 1.08999 * 109.47299 * 56.52826 * 1 2 3 27 27 H 1.09003 * 109.46859 * 176.52598 * 1 2 3 28 28 H 1.09002 * 109.47277 * 240.00188 * 2 1 3 29 29 H 1.09000 * 109.47433 * 119.99669 * 2 1 3 30 30 H 1.00907 * 110.99660 * 37.62522 * 5 3 2 31 31 H 1.09002 * 109.47234 * 305.20178 * 6 5 3 32 32 H 1.08998 * 109.47043 * 65.20584 * 6 5 3 33 33 H 0.97004 * 119.99689 * 180.02562 * 10 9 7 34 34 H 1.08000 * 119.94325 * 0.02562 * 16 15 3 35 35 H 1.07996 * 119.97202 * 180.28969 * 17 16 15 36 36 H 1.08002 * 119.96179 * 359.97438 * 20 15 3 37 37 H 1.09000 * 109.70716 * 165.85358 * 22 21 19 38 38 H 1.09005 * 109.70478 * 286.47504 * 22 21 19 39 39 H 1.09000 * 109.70918 * 59.94957 * 23 22 21 40 40 H 1.09000 * 109.70764 * 180.57513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9846 0.8355 5 7 3.5027 1.4448 0.1356 6 6 3.9005 1.4026 1.5490 7 6 5.3980 1.5349 1.6536 8 1 5.9946 1.6403 0.7594 9 6 6.0067 1.5214 2.8906 10 7 5.2802 1.3926 3.9794 11 14 7.8629 1.6847 3.0202 12 1 8.2889 2.9768 2.4249 13 1 8.2651 1.6421 4.4491 14 1 8.5105 0.5658 2.2896 15 6 1.6544 2.1116 -1.2941 16 6 2.4018 1.8890 -2.4356 17 6 2.0487 2.4972 -3.6252 18 6 0.9497 3.3420 -3.6742 19 6 0.2006 3.5689 -2.5259 20 6 0.5575 2.9512 -1.3364 21 8 -0.8846 4.3900 -2.5530 22 6 -0.9909 5.2796 -3.6698 23 6 -0.7024 4.4821 -4.9488 24 8 0.6197 3.9413 -4.8509 25 1 -0.3634 0.4590 0.9195 26 1 -0.3634 0.5668 -0.8572 27 1 -0.3633 -1.0258 -0.0623 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9147 0.6809 -0.3791 31 1 3.4249 2.2239 2.0850 32 1 3.5882 0.4542 1.9861 33 1 5.7084 1.3834 4.8498 34 1 3.2608 1.2354 -2.3986 35 1 2.6314 2.3179 -4.5166 36 1 -0.0224 3.1266 -0.4423 37 1 -1.9978 5.6946 -3.7146 38 1 -0.2646 6.0860 -3.5677 39 1 -1.4247 3.6718 -5.0475 40 1 -0.7671 5.1406 -5.8150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299635303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -76.464104 kcal Electronic energy + Delta-G solvation = -21385.997944 eV Core-core repulsion = 18165.063870 eV Total energy + Delta-G solvation = -3220.934074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17775 -39.77136 -38.18077 -37.24063 -35.06897 -33.14920 -31.98602 -31.51907 -29.76768 -28.42706 -26.23591 -25.22259 -23.79631 -23.31855 -22.72841 -20.91650 -19.58183 -18.61534 -18.16601 -17.79851 -16.91298 -16.44407 -16.20403 -16.01121 -15.74745 -15.34340 -15.28447 -14.91832 -14.78781 -14.60648 -14.36024 -13.93345 -13.63335 -13.33739 -13.07667 -12.86911 -12.69181 -12.51263 -12.43021 -12.14603 -12.00244 -11.95562 -11.88007 -11.58775 -11.39191 -11.23974 -10.62499 -9.54554 -9.07273 -8.91032 -8.19123 -6.29954 0.33845 0.38606 1.42663 1.46174 1.53943 2.09129 2.32863 2.42360 2.74691 3.13820 3.34884 3.58722 3.72187 3.91368 3.98337 4.05239 4.11433 4.16608 4.34589 4.40049 4.48048 4.53124 4.60355 4.61471 4.71216 4.86891 4.97730 5.07155 5.13851 5.15247 5.19569 5.23465 5.32409 5.41302 5.60601 5.69847 5.75908 5.96117 6.06641 6.46730 6.50576 6.75406 6.92248 7.40651 8.91648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.003823 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.410515 B = 7321.899921 C = 7766.010831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.127 3.873 4 H 0.061 0.939 5 N -0.679 5.679 6 C 0.213 3.787 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.971 3.029 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.265 1.265 15 C -0.053 4.053 16 C -0.097 4.097 17 C -0.116 4.116 18 C 0.033 3.967 19 C 0.041 3.959 20 C -0.121 4.121 21 O -0.325 6.325 22 C 0.013 3.987 23 C 0.016 3.984 24 O -0.322 6.322 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.338 0.662 31 H -0.005 1.005 32 H -0.033 1.033 33 H 0.264 0.736 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 3.571 -18.076 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.017 3.983 4 H 0.080 0.920 5 N -0.308 5.308 6 C 0.085 3.915 7 C -0.571 4.571 8 H 0.083 0.917 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.795 3.205 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.190 1.190 15 C -0.054 4.054 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.012 4.012 19 C -0.004 4.004 20 C -0.140 4.140 21 O -0.241 6.241 22 C -0.062 4.062 23 C -0.059 4.059 24 O -0.238 6.238 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.014 0.986 32 H -0.015 1.015 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.945 4.300 -17.958 23.139 hybrid contribution 0.529 -0.633 0.870 1.199 sum -13.416 3.667 -17.088 22.033 Atomic orbital electron populations 1.21694 0.94131 1.02282 1.01854 1.22141 0.97900 0.96053 1.01835 1.20444 0.88933 0.95037 0.93923 0.92040 1.60590 1.06531 1.50696 1.13007 1.19186 0.94997 0.93041 0.84273 1.21527 0.93013 1.49654 0.92916 0.91726 1.25924 1.03713 0.94768 0.95260 1.70088 1.37661 1.51377 0.98371 0.85412 0.78963 0.79096 0.76979 1.19564 1.20915 1.18966 1.19521 0.94016 0.96743 0.95132 1.20825 0.99449 1.00394 0.90917 1.20613 0.96783 0.96536 0.99561 1.18954 0.98612 0.98913 0.84691 1.18821 0.91245 0.96746 0.93576 1.20301 0.98373 0.99397 0.95918 1.86264 1.40557 1.50088 1.47152 1.23961 1.06641 0.91165 0.84433 1.23934 0.82156 0.99310 1.00480 1.86266 1.33722 1.71897 1.31888 0.93087 0.92213 0.91510 0.90729 0.93279 0.84438 0.98638 1.01503 0.92705 0.84487 0.83302 0.85192 0.82822 0.90726 0.90132 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.72 71.98 0.70 -2.99 16 2 C -0.14 -4.35 5.37 30.59 0.16 -4.19 16 3 C 0.13 4.57 2.26 44.17 0.10 4.67 16 4 H 0.06 2.43 7.55 -2.39 -0.02 2.42 16 5 N -0.68 -29.06 5.63 -499.47 -2.81 -31.87 16 6 C 0.21 11.41 5.27 85.56 0.45 11.86 16 7 C -0.53 -30.56 9.36 25.60 0.24 -30.32 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.00 0.08 5.46 84.65 0.46 0.54 16 10 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 11 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 C -0.05 -1.71 4.25 -19.87 -0.08 -1.80 16 16 C -0.10 -2.89 9.32 22.26 0.21 -2.68 16 17 C -0.12 -3.17 9.96 22.37 0.22 -2.95 16 18 C 0.03 0.92 6.49 22.56 0.15 1.07 16 19 C 0.04 1.19 6.49 22.56 0.15 1.34 16 20 C -0.12 -3.74 8.58 22.37 0.19 -3.55 16 21 O -0.33 -8.29 10.42 -82.55 -0.86 -9.15 16 22 C 0.01 0.20 7.26 72.14 0.52 0.72 16 23 C 0.02 0.23 7.26 72.14 0.52 0.75 16 24 O -0.32 -7.64 10.42 -82.57 -0.86 -8.50 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.52 6.57 -2.39 -0.02 1.50 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.71 7.52 -2.39 -0.02 1.70 16 30 H 0.34 13.39 7.92 -89.69 -0.71 12.68 16 31 H 0.00 -0.27 7.92 -2.39 -0.02 -0.29 16 32 H -0.03 -1.86 7.56 -2.39 -0.02 -1.88 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.14 3.86 7.27 -2.91 -0.02 3.83 16 35 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.13 3.89 8.03 -2.91 -0.02 3.87 16 37 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -68.91 329.19 2.10 -66.81 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.33 Total: 20.15 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.99 Total: -27.52 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -2.53 Total: -88.48 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -1.72 Total: -17.65 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.91 2.10 -66.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.654 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds