Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46794 * 2 1 4 4 H 1.08996 * 109.47605 * 54.72795 * 3 2 1 5 5 N 1.46907 * 109.46994 * 294.72372 * 3 2 1 6 6 C 1.46901 * 110.99800 * 153.67783 * 5 3 2 7 7 C 1.50702 * 109.46801 * 175.38760 * 6 5 3 8 8 H 1.08002 * 119.99995 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00234 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00050 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46990 * 59.99909 * 11 9 7 13 13 H 1.48502 * 109.47072 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46985 * 299.99772 * 11 9 7 15 15 C 1.50704 * 109.47090 * 174.72907 * 3 2 1 16 16 C 1.38255 * 119.94326 * 79.99818 * 15 3 2 17 17 C 1.38198 * 120.11182 * 180.02562 * 16 15 3 18 18 C 1.38695 * 120.06819 * 0.02562 * 17 16 15 19 19 C 1.38974 * 119.81856 * 359.88568 * 18 17 16 20 20 C 1.38192 * 119.94116 * 259.71953 * 15 3 2 21 21 O 1.36109 * 120.78369 * 180.36146 * 19 18 17 22 22 C 1.43169 * 116.69124 * 342.52027 * 21 19 18 23 23 C 1.53472 * 108.23522 * 46.30412 * 22 21 19 24 24 O 1.36105 * 119.40438 * 179.64840 * 18 17 16 25 25 H 1.09003 * 109.47291 * 306.22218 * 1 2 3 26 26 H 1.08996 * 109.47171 * 66.23119 * 1 2 3 27 27 H 1.09008 * 109.46716 * 186.22826 * 1 2 3 28 28 H 1.08999 * 109.47394 * 239.99676 * 2 1 3 29 29 H 1.08999 * 109.47140 * 119.99508 * 2 1 3 30 30 H 1.00901 * 110.99463 * 29.72767 * 5 3 2 31 31 H 1.09007 * 109.46782 * 55.38834 * 6 5 3 32 32 H 1.08999 * 109.47232 * 295.38998 * 6 5 3 33 33 H 0.97000 * 120.00480 * 180.02562 * 10 9 7 34 34 H 1.08001 * 119.94193 * 0.03841 * 16 15 3 35 35 H 1.08007 * 119.96182 * 180.02562 * 17 16 15 36 36 H 1.08001 * 119.97143 * 359.97438 * 20 15 3 37 37 H 1.09002 * 109.71178 * 165.98815 * 22 21 19 38 38 H 1.08999 * 109.71591 * 286.61870 * 22 21 19 39 39 H 1.09003 * 109.70789 * 59.99039 * 23 22 21 40 40 H 1.08999 * 109.70592 * 180.60356 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6016 1.9829 0.8389 5 7 1.6569 2.0973 -1.2581 6 6 1.5467 3.5516 -1.0824 7 6 1.2646 4.1984 -2.4140 8 1 1.1757 3.5900 -3.3019 9 6 1.1201 5.5669 -2.4987 10 7 1.2279 6.3078 -1.4174 11 14 0.7712 6.3689 -4.1494 12 1 -0.5031 5.8389 -4.6976 13 1 0.6596 7.8390 -3.9718 14 1 1.8790 6.0662 -5.0908 15 6 3.5413 1.4446 0.1305 16 6 4.3307 1.2015 -0.9781 17 6 5.7078 1.2020 -0.8623 18 6 6.3017 1.4461 0.3671 19 6 5.5081 1.6923 1.4811 20 6 4.1266 1.6953 1.3570 21 8 6.0702 1.9414 2.6955 22 6 7.4418 1.5646 2.8587 23 6 8.2230 2.0513 1.6306 24 8 7.6590 1.4363 0.4673 25 1 -0.3634 0.6073 0.8291 26 1 -0.3633 0.4142 -0.9405 27 1 -0.3633 -1.0217 0.1115 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.7981 1.7106 -1.6200 31 1 2.4821 3.9408 -0.6802 32 1 0.7337 3.7735 -0.3911 33 1 1.1259 7.2706 -1.4770 34 1 3.8703 1.0110 -1.9364 35 1 6.3222 1.0122 -1.7301 36 1 3.5078 1.8898 2.2205 37 1 7.8458 2.0280 3.7588 38 1 7.5184 0.4801 2.9369 39 1 8.1417 3.1353 1.5492 40 1 9.2710 1.7669 1.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299635306.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = -55.523089 kcal Electronic energy + Delta-G solvation = -21557.642252 eV Core-core repulsion = 18337.616248 eV Total energy + Delta-G solvation = -3220.026003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04141 -38.35132 -37.08450 -35.83704 -33.09417 -31.22924 -30.96498 -30.44226 -28.51339 -26.53822 -25.12821 -23.99987 -22.36586 -21.58233 -21.22377 -19.61406 -18.38155 -17.06944 -16.84772 -16.28446 -15.32497 -15.21056 -14.88559 -14.79031 -14.29147 -14.21176 -14.02571 -13.68325 -13.57617 -13.01226 -12.59738 -12.45099 -12.28248 -12.04363 -11.53351 -11.26565 -11.19577 -11.07780 -11.00346 -10.80549 -10.64979 -10.49095 -10.26592 -10.24157 -9.81439 -9.14566 -8.43588 -8.26806 -7.66972 -7.31661 -5.98381 -4.00264 1.62878 1.70216 3.15029 3.32917 3.36042 3.39993 3.42930 4.05554 4.24878 4.46284 4.74664 4.83287 4.85093 5.03350 5.20405 5.23257 5.35599 5.37446 5.38550 5.52192 5.56408 5.67456 5.73741 5.93945 6.02541 6.09007 6.17528 6.20375 6.40977 6.44663 6.53746 6.59699 6.99785 7.06190 7.11102 7.34896 7.44225 7.63831 7.82861 8.17728 8.45187 8.63186 9.08490 9.64292 11.12542 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.004921 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.401828 B = 5688.166428 C = 6688.072542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.124 3.876 4 H 0.046 0.954 5 N -0.681 5.681 6 C 0.196 3.804 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.052 4.052 16 C -0.073 4.073 17 C -0.120 4.120 18 C 0.038 3.962 19 C 0.042 3.958 20 C -0.112 4.112 21 O -0.310 6.310 22 C 0.022 3.978 23 C 0.021 3.979 24 O -0.312 6.312 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.332 0.668 31 H 0.028 0.972 32 H -0.014 1.014 33 H 0.261 0.739 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 -12.570 7.550 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.013 3.987 4 H 0.064 0.936 5 N -0.314 5.314 6 C 0.070 3.930 7 C -0.550 4.550 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.053 4.053 16 C -0.091 4.091 17 C -0.139 4.139 18 C -0.007 4.007 19 C -0.003 4.003 20 C -0.131 4.131 21 O -0.225 6.225 22 C -0.054 4.054 23 C -0.055 4.055 24 O -0.227 6.227 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.003 0.997 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.253 -12.330 7.406 17.664 hybrid contribution -0.678 0.886 -0.115 1.122 sum 9.575 -11.444 7.291 16.608 Atomic orbital electron populations 1.21824 0.95868 1.01220 1.02316 1.21677 0.95616 0.96122 1.02273 1.20368 0.90138 0.94170 0.94006 0.93604 1.60656 1.38640 1.07534 1.24550 1.19569 0.95894 0.81033 0.96523 1.21130 1.48015 0.91672 0.94185 0.92019 1.24979 0.95579 0.97359 0.96614 1.69958 1.50386 1.05526 1.27888 0.86574 0.78795 0.78005 0.84081 1.20301 1.21425 1.20196 1.19695 0.96076 0.97802 0.91776 1.20861 0.91139 0.97655 0.99465 1.20457 0.95024 1.03996 0.94387 1.18837 0.81988 1.05870 0.93973 1.18732 0.92702 1.05228 0.83618 1.20262 0.90741 1.03457 0.98641 1.86295 1.26026 1.79812 1.30379 1.23535 0.81316 1.01045 0.99466 1.23553 0.98536 0.98583 0.84844 1.86265 1.17713 1.75836 1.42851 0.92848 0.92093 0.92889 0.91106 0.91995 0.84896 0.95386 0.99669 0.92934 0.84034 0.85270 0.85422 0.86563 0.90917 0.90674 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.63 37.16 0.36 -1.63 16 2 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 3 C 0.12 2.17 2.24 -68.86 -0.15 2.02 16 4 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 5 N -0.68 -14.07 5.51 -109.21 -0.60 -14.67 16 6 C 0.20 5.14 5.20 -4.97 -0.03 5.11 16 7 C -0.51 -14.47 9.36 -34.44 -0.32 -14.80 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 11 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.05 -0.93 4.72 -104.63 -0.49 -1.42 16 16 C -0.07 -1.26 9.32 -39.59 -0.37 -1.63 16 17 C -0.12 -1.97 9.96 -39.43 -0.39 -2.36 16 18 C 0.04 0.62 6.49 -39.14 -0.25 0.37 16 19 C 0.04 0.70 6.49 -39.14 -0.25 0.45 16 20 C -0.11 -1.94 9.58 -39.42 -0.38 -2.32 16 21 O -0.31 -4.69 10.42 -32.88 -0.34 -5.03 16 22 C 0.02 0.23 7.26 37.40 0.27 0.50 16 23 C 0.02 0.22 7.26 37.40 0.27 0.49 16 24 O -0.31 -4.58 10.42 -32.87 -0.34 -4.92 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.82 6.66 -51.93 -0.35 0.47 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.33 6.46 6.61 -39.29 -0.26 6.20 16 31 H 0.03 0.81 7.98 -51.93 -0.41 0.40 16 32 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.14 2.43 7.71 -52.49 -0.40 2.02 16 35 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.13 2.06 8.03 -52.49 -0.42 1.64 16 37 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -32.16 331.10 -8.59 -40.75 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.02 Total: 4.00 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.99 Total: -15.51 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.13 Total: -41.14 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.68 Total: -9.96 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.16 -8.59 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635306.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.773 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds