Wall clock time and date at job start Mon Mar 30 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46794 * 2 1 4 4 H 1.08996 * 109.47605 * 54.72795 * 3 2 1 5 5 N 1.46907 * 109.46994 * 294.72372 * 3 2 1 6 6 C 1.46901 * 110.99800 * 153.67783 * 5 3 2 7 7 C 1.50702 * 109.46801 * 175.38760 * 6 5 3 8 8 H 1.08002 * 119.99995 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00234 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00050 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46990 * 59.99909 * 11 9 7 13 13 H 1.48502 * 109.47072 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46985 * 299.99772 * 11 9 7 15 15 C 1.50704 * 109.47090 * 174.72907 * 3 2 1 16 16 C 1.38255 * 119.94326 * 79.99818 * 15 3 2 17 17 C 1.38198 * 120.11182 * 180.02562 * 16 15 3 18 18 C 1.38695 * 120.06819 * 0.02562 * 17 16 15 19 19 C 1.38974 * 119.81856 * 359.88568 * 18 17 16 20 20 C 1.38192 * 119.94116 * 259.71953 * 15 3 2 21 21 O 1.36109 * 120.78369 * 180.36146 * 19 18 17 22 22 C 1.43169 * 116.69124 * 342.52027 * 21 19 18 23 23 C 1.53472 * 108.23522 * 46.30412 * 22 21 19 24 24 O 1.36105 * 119.40438 * 179.64840 * 18 17 16 25 25 H 1.09003 * 109.47291 * 306.22218 * 1 2 3 26 26 H 1.08996 * 109.47171 * 66.23119 * 1 2 3 27 27 H 1.09008 * 109.46716 * 186.22826 * 1 2 3 28 28 H 1.08999 * 109.47394 * 239.99676 * 2 1 3 29 29 H 1.08999 * 109.47140 * 119.99508 * 2 1 3 30 30 H 1.00901 * 110.99463 * 29.72767 * 5 3 2 31 31 H 1.09007 * 109.46782 * 55.38834 * 6 5 3 32 32 H 1.08999 * 109.47232 * 295.38998 * 6 5 3 33 33 H 0.97000 * 120.00480 * 180.02562 * 10 9 7 34 34 H 1.08001 * 119.94193 * 0.03841 * 16 15 3 35 35 H 1.08007 * 119.96182 * 180.02562 * 17 16 15 36 36 H 1.08001 * 119.97143 * 359.97438 * 20 15 3 37 37 H 1.09002 * 109.71178 * 165.98815 * 22 21 19 38 38 H 1.08999 * 109.71591 * 286.61870 * 22 21 19 39 39 H 1.09003 * 109.70789 * 59.99039 * 23 22 21 40 40 H 1.08999 * 109.70592 * 180.60356 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6016 1.9829 0.8389 5 7 1.6569 2.0973 -1.2581 6 6 1.5467 3.5516 -1.0824 7 6 1.2646 4.1984 -2.4140 8 1 1.1757 3.5900 -3.3019 9 6 1.1201 5.5669 -2.4987 10 7 1.2279 6.3078 -1.4174 11 14 0.7712 6.3689 -4.1494 12 1 -0.5031 5.8389 -4.6976 13 1 0.6596 7.8390 -3.9718 14 1 1.8790 6.0662 -5.0908 15 6 3.5413 1.4446 0.1305 16 6 4.3307 1.2015 -0.9781 17 6 5.7078 1.2020 -0.8623 18 6 6.3017 1.4461 0.3671 19 6 5.5081 1.6923 1.4811 20 6 4.1266 1.6953 1.3570 21 8 6.0702 1.9414 2.6955 22 6 7.4418 1.5646 2.8587 23 6 8.2230 2.0513 1.6306 24 8 7.6590 1.4363 0.4673 25 1 -0.3634 0.6073 0.8291 26 1 -0.3633 0.4142 -0.9405 27 1 -0.3633 -1.0217 0.1115 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 0.7981 1.7106 -1.6200 31 1 2.4821 3.9408 -0.6802 32 1 0.7337 3.7735 -0.3911 33 1 1.1259 7.2706 -1.4770 34 1 3.8703 1.0110 -1.9364 35 1 6.3222 1.0122 -1.7301 36 1 3.5078 1.8898 2.2205 37 1 7.8458 2.0280 3.7588 38 1 7.5184 0.4801 2.9369 39 1 8.1417 3.1353 1.5492 40 1 9.2710 1.7669 1.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299635306.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:27 Heat of formation + Delta-G solvation = -76.150402 kcal Electronic energy + Delta-G solvation = -21558.536719 eV Core-core repulsion = 18337.616248 eV Total energy + Delta-G solvation = -3220.920471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17944 -39.68190 -38.20102 -37.26874 -35.08516 -32.88737 -32.07364 -31.70512 -29.73315 -28.34556 -26.51066 -25.20778 -23.63546 -23.57179 -22.38128 -20.86937 -19.53253 -18.52142 -18.20095 -17.91332 -16.82528 -16.60627 -16.34993 -15.92191 -15.76986 -15.48008 -15.34612 -14.84484 -14.80474 -14.34774 -14.13972 -14.01837 -13.88575 -13.32436 -13.10619 -12.76853 -12.68945 -12.59587 -12.36765 -12.18508 -12.03141 -11.96794 -11.69960 -11.48541 -11.39447 -11.19633 -10.62757 -9.55494 -9.12975 -8.92595 -8.18984 -6.30032 0.31806 0.39945 1.41886 1.45726 1.53348 2.08691 2.30530 2.41859 2.74523 3.14287 3.33335 3.57476 3.70573 3.89872 3.96789 4.09382 4.14164 4.22355 4.34779 4.43027 4.46334 4.47355 4.58751 4.70084 4.75341 4.90416 4.96084 5.10398 5.11228 5.17469 5.23972 5.29057 5.30670 5.45361 5.61302 5.74071 5.77444 5.93722 6.08068 6.45574 6.51161 6.77676 6.94367 7.40945 8.92288 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.004921 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.401828 B = 5688.166428 C = 6688.072542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C 0.124 3.876 4 H 0.028 0.972 5 N -0.673 5.673 6 C 0.217 3.783 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.937 5.937 11 Si 0.971 3.029 12 H -0.264 1.264 13 H -0.285 1.285 14 H -0.269 1.269 15 C -0.067 4.067 16 C -0.085 4.085 17 C -0.124 4.124 18 C 0.033 3.967 19 C 0.038 3.962 20 C -0.129 4.129 21 O -0.327 6.327 22 C 0.015 3.985 23 C 0.013 3.987 24 O -0.321 6.321 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.341 0.659 31 H -0.008 1.008 32 H -0.043 1.043 33 H 0.263 0.737 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 -13.554 7.041 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.014 3.986 4 H 0.046 0.954 5 N -0.306 5.306 6 C 0.089 3.911 7 C -0.568 4.568 8 H 0.086 0.914 9 C -0.198 4.198 10 N -0.577 5.577 11 Si 0.795 3.205 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.068 4.068 16 C -0.103 4.103 17 C -0.143 4.143 18 C -0.012 4.012 19 C -0.007 4.007 20 C -0.148 4.148 21 O -0.243 6.243 22 C -0.060 4.060 23 C -0.062 4.062 24 O -0.236 6.236 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.010 0.990 32 H -0.025 1.025 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.247 -13.346 6.905 18.770 hybrid contribution -0.850 1.170 0.172 1.456 sum 10.397 -12.176 7.077 17.506 Atomic orbital electron populations 1.21816 0.94921 1.02719 1.01553 1.21622 0.96317 0.93368 1.03384 1.20441 0.90448 0.96023 0.91662 0.95365 1.60496 1.38950 1.04627 1.26489 1.19125 0.92763 0.84212 0.95033 1.21521 1.47932 0.92337 0.94978 0.91433 1.25952 0.95101 0.98048 1.00672 1.70106 1.51331 1.05865 1.30440 0.85412 0.79194 0.76817 0.79028 1.18845 1.21094 1.19402 1.19748 0.96026 0.98710 0.92346 1.20890 0.91771 0.98472 0.99172 1.20676 0.94871 1.03486 0.95236 1.18946 0.83076 1.05327 0.93812 1.18814 0.92654 1.04673 0.84575 1.20380 0.91529 1.04183 0.98693 1.86263 1.28662 1.79878 1.29466 1.23964 0.78907 1.02240 1.00851 1.23949 1.00493 0.98257 0.83499 1.86246 1.16421 1.76095 1.44877 0.93591 0.92909 0.90198 0.90342 0.90442 0.83957 0.99029 1.02507 0.92811 0.84224 0.83485 0.85265 0.82932 0.89790 0.91187 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.63 71.98 0.69 -3.07 16 2 C -0.11 -2.96 5.49 30.59 0.17 -2.79 16 3 C 0.12 4.49 2.24 44.17 0.10 4.59 16 4 H 0.03 1.12 7.69 -2.39 -0.02 1.10 16 5 N -0.67 -28.52 5.51 -499.43 -2.75 -31.27 16 6 C 0.22 11.81 5.20 85.56 0.45 12.26 16 7 C -0.53 -30.45 9.36 25.60 0.24 -30.21 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.00 0.00 5.46 84.65 0.46 0.47 16 10 N -0.94 -58.05 13.29 21.45 0.28 -57.77 16 11 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 15 C -0.07 -2.45 4.72 -19.87 -0.09 -2.55 16 16 C -0.08 -2.97 9.32 22.26 0.21 -2.77 16 17 C -0.12 -4.05 9.96 22.37 0.22 -3.83 16 18 C 0.03 1.09 6.49 22.56 0.15 1.23 16 19 C 0.04 1.27 6.49 22.56 0.15 1.42 16 20 C -0.13 -4.59 9.58 22.37 0.21 -4.38 16 21 O -0.33 -9.65 10.42 -82.56 -0.86 -10.51 16 22 C 0.01 0.27 7.26 72.14 0.52 0.80 16 23 C 0.01 0.24 7.26 72.14 0.52 0.76 16 24 O -0.32 -8.95 10.42 -82.51 -0.86 -9.81 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.38 6.66 -2.39 -0.02 1.36 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.34 13.39 6.61 -89.69 -0.59 12.80 16 31 H -0.01 -0.52 7.98 -2.38 -0.02 -0.54 16 32 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.14 4.84 7.71 -2.91 -0.02 4.82 16 35 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.13 4.39 8.03 -2.91 -0.02 4.37 16 37 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -70.94 331.10 2.28 -68.67 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.44 Total: 21.84 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.00 Total: -28.07 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -2.47 Total: -89.04 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.72 Total: -20.32 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.94 2.28 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635306.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.482 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds