Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 C 1.52999 * 109.47110 * 239.99816 * 2 1 3 5 5 O 1.42898 * 109.47151 * 119.99995 * 2 1 3 6 6 C 1.42899 * 114.00045 * 59.99678 * 5 2 1 7 7 C 1.50699 * 109.47394 * 180.02562 * 6 5 2 8 8 O 1.21286 * 119.99936 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.39943 * 120.00142 * 174.88898 * 9 7 6 11 11 C 1.39287 * 119.94535 * 145.78087 * 10 9 7 12 12 C 1.38491 * 120.42528 * 179.97438 * 11 10 9 13 13 C 1.37679 * 120.32381 * 359.97438 * 12 11 10 14 14 C 1.40748 * 119.88500 * 0.02562 * 13 12 11 15 15 C 1.41410 * 120.20884 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99479 * 205.17834 * 15 14 13 17 17 C 1.39925 * 120.00126 * 25.17868 * 15 14 13 18 18 N 1.30839 * 120.00271 * 16.79548 * 17 15 14 19 19 Si 1.86799 * 120.00066 * 196.79538 * 17 15 14 20 20 H 1.48492 * 109.47286 * 94.96276 * 19 17 15 21 21 H 1.48506 * 109.47262 * 214.96375 * 19 17 15 22 22 H 1.48506 * 109.46958 * 334.95851 * 19 17 15 23 23 C 1.38246 * 119.94394 * 325.51381 * 10 9 7 24 24 H 1.08998 * 109.47313 * 300.00124 * 1 2 3 25 25 H 1.09003 * 109.46648 * 60.00034 * 1 2 3 26 26 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46793 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46746 * 299.99996 * 3 2 1 29 29 H 1.08998 * 109.47127 * 59.99761 * 3 2 1 30 30 H 1.09004 * 109.47243 * 300.00354 * 4 2 1 31 31 H 1.09007 * 109.47066 * 60.00059 * 4 2 1 32 32 H 1.09003 * 109.47200 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.47411 * 300.00353 * 6 5 2 34 34 H 1.09002 * 109.46795 * 60.00158 * 6 5 2 35 35 H 0.97005 * 119.99878 * 354.89041 * 9 7 6 36 36 H 1.07994 * 119.79263 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.83866 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.06026 * 180.02562 * 13 12 11 39 39 H 0.96988 * 120.00258 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.16132 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1410 -2.6444 2.5258 8 8 2.8304 -1.9776 3.2682 9 7 1.8725 -3.9298 2.8288 10 6 2.4747 -4.5268 3.9421 11 6 1.7769 -5.4767 4.6842 12 6 2.3634 -6.0741 5.7874 13 6 3.6442 -5.7355 6.1625 14 6 4.3615 -4.7772 5.4221 15 6 5.6771 -4.4239 5.8016 16 1 6.0755 -3.4569 5.5320 17 6 6.4627 -5.3270 6.5262 18 7 6.1307 -6.5917 6.5732 19 14 7.9855 -4.7271 7.4266 20 1 7.6417 -4.4368 8.8416 21 1 9.0352 -5.7765 7.3775 22 1 8.4904 -3.4913 6.7761 23 6 3.7633 -4.1767 4.3002 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1301 -0.7209 -1.2495 33 1 0.4958 -2.0777 1.2907 34 1 1.9492 -2.5915 0.4008 35 1 1.2619 -4.4413 2.2752 36 1 0.7720 -5.7492 4.3976 37 1 1.8139 -6.8098 6.3558 38 1 4.0976 -6.2043 7.0233 39 1 6.6750 -7.2177 7.0758 40 1 4.3068 -3.4438 3.7226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313504088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = -68.065989 kcal Electronic energy + Delta-G solvation = -21065.757510 eV Core-core repulsion = 17845.187606 eV Total energy + Delta-G solvation = -3220.569904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.89961 -38.75141 -37.02152 -34.42477 -33.50195 -33.00677 -29.79478 -29.26641 -27.78089 -27.64517 -26.51418 -25.25397 -21.69975 -20.84796 -20.09463 -19.60421 -17.75071 -17.09061 -16.35226 -15.92992 -15.42149 -15.17008 -14.67749 -14.60605 -14.44690 -13.64082 -13.60334 -13.17976 -12.90751 -12.82647 -12.42714 -12.23739 -12.09907 -11.96850 -11.93385 -11.62733 -11.44808 -11.13766 -11.11034 -10.89835 -10.75616 -10.42700 -10.09213 -9.68228 -9.61681 -9.35024 -9.04168 -8.90475 -7.42452 -6.89717 -6.68491 -4.30777 2.60591 2.86152 3.05570 3.12219 3.18066 3.22693 3.40877 3.99477 4.10616 4.59483 4.62340 4.67555 4.79888 4.98294 5.11288 5.17932 5.26915 5.34346 5.49069 5.51833 5.63311 5.65200 5.75084 5.80318 6.04574 6.07441 6.26461 6.41282 6.77397 6.99107 7.06500 7.09716 7.14764 7.28955 7.60459 7.75345 7.99346 8.13132 8.19519 8.29993 8.66135 8.76788 8.97363 9.01549 10.24717 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.003798 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.335193 B = 7371.045469 C = 8267.346446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.348 6.348 6 C 0.042 3.958 7 C 0.503 3.497 8 O -0.496 6.496 9 N -0.668 5.668 10 C 0.153 3.847 11 C -0.261 4.261 12 C -0.092 4.092 13 C -0.172 4.172 14 C 0.120 3.880 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.210 4.210 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 7.160 -12.905 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.267 6.267 6 C -0.038 4.038 7 C 0.288 3.712 8 O -0.368 6.368 9 N -0.314 5.314 10 C 0.061 3.939 11 C -0.283 4.283 12 C -0.111 4.111 13 C -0.191 4.191 14 C 0.117 3.883 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.232 4.232 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.713 7.567 -12.184 16.782 hybrid contribution 0.103 -0.367 -0.164 0.415 sum -8.610 7.200 -12.348 16.687 Atomic orbital electron populations 1.22458 0.95756 1.02539 1.02973 1.21586 0.93138 0.93526 0.85388 1.21735 1.02294 0.92989 1.02380 1.22461 1.02612 1.00914 0.97791 1.88136 1.73948 1.21922 1.42645 1.22221 0.99526 0.85312 0.96768 1.20213 0.81970 0.81969 0.87066 1.90779 1.36159 1.60291 1.49581 1.43326 1.47325 1.11528 1.29250 1.17410 0.92250 0.96082 0.88141 1.20026 0.99180 1.07187 1.01880 1.20459 0.95684 0.98819 0.96183 1.21354 0.93269 1.02661 1.01862 1.17492 0.92566 0.89641 0.88592 1.19616 0.97605 1.01641 1.29922 0.90295 1.25900 0.99409 0.94173 0.94655 1.69831 1.37419 1.02590 1.32327 0.86289 0.80418 0.79655 0.80313 1.19340 1.20336 1.18510 1.20990 0.93845 1.07397 1.00940 0.91494 0.91442 0.92182 0.91559 0.91182 0.91622 0.92158 0.91454 0.91406 0.90496 0.90288 0.76874 0.89287 0.89029 0.86290 0.90981 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.25 37.16 0.31 -1.22 16 2 C 0.10 1.08 1.14 -90.62 -0.10 0.98 16 3 C -0.14 -1.30 8.84 37.16 0.33 -0.97 16 4 C -0.18 -1.58 8.25 37.16 0.31 -1.27 16 5 O -0.35 -5.20 9.52 -55.14 -0.52 -5.72 16 6 C 0.04 0.56 5.62 36.01 0.20 0.76 16 7 C 0.50 9.41 7.63 -10.99 -0.08 9.33 16 8 O -0.50 -11.95 14.25 -14.36 -0.20 -12.16 16 9 N -0.67 -12.10 5.34 -9.91 -0.05 -12.15 16 10 C 0.15 3.53 6.25 -83.76 -0.52 3.01 16 11 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16 12 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 13 C -0.17 -4.59 8.69 -38.84 -0.34 -4.92 16 14 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 15 C -0.46 -12.86 9.05 -37.74 -0.34 -13.20 16 16 H 0.08 2.20 7.90 -52.49 -0.41 1.78 16 17 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 18 N -0.80 -21.00 10.94 55.55 0.61 -20.39 16 19 Si 0.91 19.44 29.59 -169.99 -5.03 14.41 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.21 -5.61 8.39 -38.68 -0.32 -5.93 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.80 6.42 -51.93 -0.33 0.47 16 34 H 0.08 0.86 6.42 -51.93 -0.33 0.53 16 35 H 0.40 5.36 8.82 -40.82 -0.36 5.00 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 39 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 40 H 0.11 2.92 6.48 -52.49 -0.34 2.58 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -32.75 330.48 -7.99 -40.74 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.72 Total: 7.88 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.04 Total: -17.59 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.55 Total: -32.54 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.73 Total: -17.88 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.75 -7.99 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313504088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.330 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds