Wall clock time and date at job start Mon Mar 30 2020 02:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 C 1.52999 * 109.47110 * 239.99816 * 2 1 3 5 5 O 1.42898 * 109.47151 * 119.99995 * 2 1 3 6 6 C 1.42899 * 114.00045 * 59.99678 * 5 2 1 7 7 C 1.50699 * 109.47394 * 180.02562 * 6 5 2 8 8 O 1.21286 * 119.99936 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.39943 * 120.00142 * 174.88898 * 9 7 6 11 11 C 1.39287 * 119.94535 * 145.78087 * 10 9 7 12 12 C 1.38491 * 120.42528 * 179.97438 * 11 10 9 13 13 C 1.37679 * 120.32381 * 359.97438 * 12 11 10 14 14 C 1.40748 * 119.88500 * 0.02562 * 13 12 11 15 15 C 1.41410 * 120.20884 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99479 * 205.17834 * 15 14 13 17 17 C 1.39925 * 120.00126 * 25.17868 * 15 14 13 18 18 N 1.30839 * 120.00271 * 16.79548 * 17 15 14 19 19 Si 1.86799 * 120.00066 * 196.79538 * 17 15 14 20 20 H 1.48492 * 109.47286 * 94.96276 * 19 17 15 21 21 H 1.48506 * 109.47262 * 214.96375 * 19 17 15 22 22 H 1.48506 * 109.46958 * 334.95851 * 19 17 15 23 23 C 1.38246 * 119.94394 * 325.51381 * 10 9 7 24 24 H 1.08998 * 109.47313 * 300.00124 * 1 2 3 25 25 H 1.09003 * 109.46648 * 60.00034 * 1 2 3 26 26 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46793 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46746 * 299.99996 * 3 2 1 29 29 H 1.08998 * 109.47127 * 59.99761 * 3 2 1 30 30 H 1.09004 * 109.47243 * 300.00354 * 4 2 1 31 31 H 1.09007 * 109.47066 * 60.00059 * 4 2 1 32 32 H 1.09003 * 109.47200 * 179.97438 * 4 2 1 33 33 H 1.09006 * 109.47411 * 300.00353 * 6 5 2 34 34 H 1.09002 * 109.46795 * 60.00158 * 6 5 2 35 35 H 0.97005 * 119.99878 * 354.89041 * 9 7 6 36 36 H 1.07994 * 119.79263 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.83866 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.06026 * 180.02562 * 13 12 11 39 39 H 0.96988 * 120.00258 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.16132 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1410 -2.6444 2.5258 8 8 2.8304 -1.9776 3.2682 9 7 1.8725 -3.9298 2.8288 10 6 2.4747 -4.5268 3.9421 11 6 1.7769 -5.4767 4.6842 12 6 2.3634 -6.0741 5.7874 13 6 3.6442 -5.7355 6.1625 14 6 4.3615 -4.7772 5.4221 15 6 5.6771 -4.4239 5.8016 16 1 6.0755 -3.4569 5.5320 17 6 6.4627 -5.3270 6.5262 18 7 6.1307 -6.5917 6.5732 19 14 7.9855 -4.7271 7.4266 20 1 7.6417 -4.4368 8.8416 21 1 9.0352 -5.7765 7.3775 22 1 8.4904 -3.4913 6.7761 23 6 3.7633 -4.1767 4.3002 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1301 -0.7209 -1.2495 33 1 0.4958 -2.0777 1.2907 34 1 1.9492 -2.5915 0.4008 35 1 1.2619 -4.4413 2.2752 36 1 0.7720 -5.7492 4.3976 37 1 1.8139 -6.8098 6.3558 38 1 4.0976 -6.2043 7.0233 39 1 6.6750 -7.2177 7.0758 40 1 4.3068 -3.4438 3.7226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313504088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:16 Heat of formation + Delta-G solvation = -88.818991 kcal Electronic energy + Delta-G solvation = -21066.657428 eV Core-core repulsion = 17845.187606 eV Total energy + Delta-G solvation = -3221.469822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34629 -39.90465 -38.80230 -36.22489 -34.86276 -34.39717 -31.76859 -30.79577 -28.86344 -28.27816 -27.69246 -27.22886 -23.40461 -22.73386 -21.31340 -20.91387 -19.56760 -18.38028 -17.67047 -17.24026 -16.96359 -16.75788 -16.46057 -15.91006 -15.65901 -15.06026 -14.79772 -14.49731 -14.43581 -14.14299 -13.92489 -13.54278 -13.12569 -13.05633 -12.94133 -12.83967 -12.79605 -12.73591 -12.65262 -12.21915 -12.19323 -11.99363 -11.58595 -11.48962 -11.16243 -10.89096 -10.61887 -10.57767 -9.41417 -8.77929 -8.62521 -6.39141 0.83432 0.97981 1.35011 1.46660 1.48980 1.74002 1.85596 2.20398 2.71436 3.01687 3.65020 3.75044 3.90704 3.96955 4.08508 4.13015 4.25038 4.45982 4.62305 4.67573 4.68401 4.80706 4.82038 4.94716 4.95075 5.02505 5.07931 5.10516 5.17024 5.21409 5.31408 5.33990 5.38666 5.73598 5.84016 6.06062 6.08965 6.22711 6.32856 6.63663 6.67898 6.91917 6.99215 7.30900 8.31861 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.003798 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.335193 B = 7371.045469 C = 8267.346446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.390 6.390 6 C 0.054 3.946 7 C 0.496 3.504 8 O -0.559 6.559 9 N -0.654 5.654 10 C 0.158 3.842 11 C -0.248 4.248 12 C -0.091 4.091 13 C -0.198 4.198 14 C 0.089 3.911 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.259 1.259 22 H -0.267 1.267 23 C -0.240 4.240 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.424 0.576 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.290 0.710 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 6.541 -14.473 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.054 3.946 3 C -0.196 4.196 4 C -0.235 4.235 5 O -0.310 6.310 6 C -0.025 4.025 7 C 0.284 3.716 8 O -0.436 6.436 9 N -0.302 5.302 10 C 0.065 3.935 11 C -0.269 4.269 12 C -0.109 4.109 13 C -0.218 4.218 14 C 0.087 3.913 15 C -0.535 4.535 16 H 0.078 0.922 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.184 1.184 22 H -0.191 1.191 23 C -0.262 4.262 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.263 0.737 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.968 6.919 -13.805 18.941 hybrid contribution 0.646 -0.149 0.218 0.698 sum -10.322 6.770 -13.587 18.357 Atomic orbital electron populations 1.22436 0.93843 1.03497 1.03584 1.21916 0.94688 0.93399 0.84609 1.21807 1.01387 0.93164 1.03252 1.22452 1.01648 1.01654 0.97785 1.88099 1.75118 1.22673 1.45079 1.22233 1.01208 0.85023 0.94070 1.21352 0.80557 0.81560 0.88091 1.90761 1.38970 1.61839 1.52027 1.43200 1.47098 1.11737 1.28144 1.17512 0.91150 0.95569 0.89309 1.20495 1.00703 1.05327 1.00335 1.20865 0.94590 0.98851 0.96624 1.21325 0.94895 1.03467 1.02076 1.17826 0.93195 0.90789 0.89537 1.19752 0.98867 1.01830 1.33048 0.92208 1.26675 1.02309 0.93972 0.94598 1.69849 1.38847 1.03390 1.32590 0.85215 0.76575 0.79111 0.78908 1.18331 1.18356 1.19111 1.20943 0.95896 1.07993 1.01377 0.92637 0.89128 0.91009 0.93098 0.88213 0.92810 0.91103 0.89063 0.92998 0.86701 0.87305 0.73694 0.84594 0.85632 0.87678 0.89921 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.25 71.98 0.59 -1.83 16 2 C 0.09 1.76 1.14 -10.79 -0.01 1.75 16 3 C -0.14 -2.53 8.84 71.98 0.64 -1.89 16 4 C -0.18 -2.64 8.25 71.98 0.59 -2.04 16 5 O -0.39 -11.38 9.52 -129.94 -1.24 -12.61 16 6 C 0.05 1.31 5.62 71.24 0.40 1.71 16 7 C 0.50 18.38 7.63 87.66 0.67 19.05 16 8 O -0.56 -28.17 14.25 15.99 0.23 -27.94 16 9 N -0.65 -22.55 5.34 -303.65 -1.62 -24.17 16 10 C 0.16 7.23 6.25 38.10 0.24 7.47 16 11 C -0.25 -10.41 9.97 22.58 0.23 -10.19 16 12 C -0.09 -4.17 10.02 22.20 0.22 -3.94 16 13 C -0.20 -10.84 8.69 22.75 0.20 -10.64 16 14 C 0.09 5.29 5.57 -21.31 -0.12 5.17 16 15 C -0.51 -30.26 9.05 23.46 0.21 -30.05 16 16 H 0.06 3.64 7.90 -2.91 -0.02 3.61 16 17 C 0.04 2.12 5.16 85.25 0.44 2.56 16 18 N -0.82 -44.45 10.94 21.82 0.24 -44.22 16 19 Si 0.98 41.04 29.59 68.60 2.03 43.07 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.24 -13.46 8.39 22.85 0.19 -13.27 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.81 6.54 -2.39 -0.02 0.79 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 0.88 6.54 -2.38 -0.02 0.87 16 31 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 1.93 6.42 -2.38 -0.02 1.91 16 34 H 0.11 2.01 6.42 -2.39 -0.02 1.99 16 35 H 0.42 9.88 8.82 -92.70 -0.82 9.06 16 36 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.11 5.94 6.16 -2.91 -0.02 5.93 16 39 H 0.29 14.01 8.30 -92.72 -0.77 13.24 16 40 H 0.08 4.75 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -77.77 330.48 4.36 -73.41 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.23 Total: 28.62 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 4.49 Total: -36.16 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.38 Total: -68.39 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.01 Total: -40.55 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -77.77 4.36 -73.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313504088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.411 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds