Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46974 * 2 1 4 4 C 1.53003 * 109.47246 * 184.99986 * 3 2 1 5 5 O 1.42898 * 109.46969 * 65.00080 * 3 2 1 6 6 C 1.42905 * 114.00001 * 60.00169 * 5 3 2 7 7 C 1.50698 * 109.46963 * 304.99965 * 3 2 1 8 8 O 1.21295 * 119.99688 * 120.00403 * 7 3 2 9 9 N 1.34771 * 120.00210 * 299.99537 * 7 3 2 10 10 C 1.39941 * 120.00051 * 174.87395 * 9 7 3 11 11 C 1.39290 * 119.94943 * 146.39223 * 10 9 7 12 12 C 1.38483 * 120.42923 * 179.97438 * 11 10 9 13 13 C 1.37680 * 120.32604 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.88240 * 359.97438 * 13 12 11 15 15 C 1.41409 * 120.21222 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99886 * 151.74437 * 15 14 13 17 17 C 1.39931 * 119.99688 * 331.74854 * 15 14 13 18 18 N 1.30833 * 120.00312 * 349.00081 * 17 15 14 19 19 Si 1.86800 * 120.00046 * 169.00530 * 17 15 14 20 20 H 1.48506 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47229 * 119.99596 * 19 17 15 22 22 H 1.48496 * 109.47284 * 240.00013 * 19 17 15 23 23 C 1.38240 * 119.94614 * 326.12042 * 10 9 7 24 24 H 1.08997 * 109.47158 * 299.99491 * 1 2 3 25 25 H 1.09001 * 109.47212 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.46678 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47106 * 240.00285 * 2 1 3 28 28 H 1.09001 * 109.47334 * 120.00318 * 2 1 3 29 29 H 1.08998 * 109.47044 * 300.00186 * 4 3 2 30 30 H 1.09003 * 109.46767 * 59.99700 * 4 3 2 31 31 H 1.08993 * 109.47441 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47269 * 59.99822 * 6 5 3 33 33 H 1.09002 * 109.46754 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.46649 * 299.99608 * 6 5 3 35 35 H 0.97003 * 120.00189 * 354.88333 * 9 7 3 36 36 H 1.08002 * 119.78202 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.83670 * 180.02562 * 12 11 10 38 38 H 1.07995 * 120.05863 * 179.97438 * 13 12 11 39 39 H 0.96995 * 120.00278 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.16275 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 -0.1257 5 8 1.6619 2.0813 1.2211 6 6 2.1824 1.4501 2.3927 7 6 1.4391 2.1877 -1.1639 8 8 0.7544 3.1694 -0.9670 9 7 1.6625 1.7635 -2.4234 10 6 1.0189 2.3892 -3.4970 11 6 1.6671 2.5049 -4.7245 12 6 1.0394 3.1218 -5.7937 13 6 -0.2332 3.6284 -5.6547 14 6 -0.9006 3.5188 -4.4204 15 6 -2.2081 4.0362 -4.2700 16 1 -2.8845 3.5944 -3.5533 17 6 -2.6254 5.1205 -5.0498 18 7 -1.7531 5.7917 -5.7573 19 14 -4.4278 5.6099 -5.0808 20 1 -5.2035 4.6982 -4.2019 21 1 -4.5701 7.0061 -4.5953 22 1 -4.9430 5.5141 -6.4703 23 6 -0.2612 2.8866 -3.3393 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9994 0.9054 0.7161 30 1 3.8532 0.9570 -1.0571 31 1 3.9281 2.4720 -0.1262 32 1 3.2717 1.4516 2.3528 33 1 1.8508 1.9949 3.2766 34 1 1.8220 0.4226 2.4423 35 1 2.2692 1.0243 -2.5858 36 1 2.6657 2.1110 -4.8431 37 1 1.5507 3.2059 -6.7413 38 1 -0.7185 4.1090 -6.4912 39 1 -2.0423 6.5435 -6.2976 40 1 -0.7665 2.7931 -2.3893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313514552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = -63.489368 kcal Electronic energy + Delta-G solvation = -21915.182299 eV Core-core repulsion = 18694.810851 eV Total energy + Delta-G solvation = -3220.371447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40399 -38.29308 -36.83412 -34.51664 -33.65686 -32.68912 -30.38193 -29.77768 -27.99921 -27.23290 -25.26670 -24.07006 -22.80754 -21.02162 -20.71008 -19.15455 -17.98708 -16.97026 -16.23772 -15.72470 -15.43820 -14.97379 -14.83358 -14.57615 -14.46014 -13.46856 -13.40793 -13.35189 -12.98604 -12.80242 -12.61765 -12.36752 -12.04302 -11.95061 -11.64935 -11.38807 -11.26750 -11.13988 -11.06888 -10.92780 -10.57057 -10.45610 -10.04642 -9.70307 -9.64228 -9.36311 -9.06667 -8.78605 -7.38434 -6.86264 -6.62604 -4.30737 2.62329 2.86352 3.13536 3.14635 3.20094 3.22329 3.41836 4.01105 4.05683 4.48085 4.70212 4.80200 4.84103 5.07869 5.15976 5.23355 5.27698 5.42250 5.49105 5.57558 5.71741 5.75263 5.85349 5.94795 6.01904 6.26124 6.34798 6.41020 6.78608 6.96544 7.06543 7.11036 7.13717 7.31590 7.60686 7.75866 8.00028 8.13486 8.20173 8.31660 8.68091 8.77581 8.99030 9.02231 10.30912 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023006 B = 0.004751 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.802692 B = 5891.550316 C = 6563.182044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.145 4.145 3 C 0.099 3.901 4 C -0.178 4.178 5 O -0.350 6.350 6 C 0.023 3.977 7 C 0.519 3.481 8 O -0.491 6.491 9 N -0.665 5.665 10 C 0.151 3.849 11 C -0.259 4.259 12 C -0.094 4.094 13 C -0.167 4.167 14 C 0.119 3.881 15 C -0.457 4.457 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.801 5.801 19 Si 0.911 3.089 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.207 4.207 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.278 0.722 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 -10.901 9.118 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.183 4.183 3 C 0.056 3.944 4 C -0.236 4.236 5 O -0.268 6.268 6 C -0.074 4.074 7 C 0.304 3.696 8 O -0.363 6.363 9 N -0.311 5.311 10 C 0.060 3.940 11 C -0.280 4.280 12 C -0.113 4.113 13 C -0.187 4.187 14 C 0.116 3.884 15 C -0.487 4.487 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.229 4.229 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.480 -9.809 9.176 15.374 hybrid contribution -0.100 -0.252 -0.040 0.274 sum 7.380 -10.060 9.136 15.464 Atomic orbital electron populations 1.21760 0.94232 1.01743 1.03476 1.22134 0.98139 0.94740 1.03239 1.21449 0.94365 0.92435 0.86184 1.22418 0.94124 1.03871 1.03150 1.88129 1.73679 1.52715 1.12243 1.22868 0.98279 0.98129 0.88123 1.19829 0.81732 0.84786 0.83275 1.90797 1.36537 1.24685 1.84293 1.43349 1.46869 1.35826 1.05067 1.17410 0.92051 0.98625 0.85905 1.20041 0.99678 1.14154 0.94130 1.20475 0.95812 0.98670 0.96358 1.21405 0.95066 1.03927 0.98298 1.17516 0.92684 0.88442 0.89805 1.19583 0.97930 1.12667 1.18504 0.90521 1.25879 0.99479 0.95435 0.93512 1.69811 1.35075 1.15538 1.22322 0.86220 0.82434 0.78971 0.78819 1.18481 1.20000 1.19839 1.20986 0.93263 1.09716 0.98890 0.91875 0.91825 0.92415 0.90460 0.90599 0.91091 0.90873 0.90912 0.93788 0.89384 0.93670 0.77015 0.89310 0.89029 0.86078 0.91101 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.49 37.16 0.35 -1.68 16 2 C -0.14 -1.61 4.66 -26.73 -0.12 -1.73 16 3 C 0.10 1.38 0.67 -91.77 -0.06 1.31 16 4 C -0.18 -1.89 8.15 37.16 0.30 -1.59 16 5 O -0.35 -5.35 9.41 -55.14 -0.52 -5.87 16 6 C 0.02 0.23 10.22 101.05 1.03 1.26 16 7 C 0.52 9.85 4.79 -10.99 -0.05 9.80 16 8 O -0.49 -12.06 14.21 -14.36 -0.20 -12.26 16 9 N -0.67 -12.02 5.15 -9.91 -0.05 -12.07 16 10 C 0.15 3.47 6.26 -83.76 -0.52 2.94 16 11 C -0.26 -5.72 9.97 -39.10 -0.39 -6.11 16 12 C -0.09 -2.21 10.01 -39.69 -0.40 -2.61 16 13 C -0.17 -4.44 8.66 -38.84 -0.34 -4.77 16 14 C 0.12 3.31 5.55 -106.85 -0.59 2.71 16 15 C -0.46 -12.76 9.06 -37.74 -0.34 -13.11 16 16 H 0.08 2.09 7.87 -52.49 -0.41 1.68 16 17 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 18 N -0.80 -21.54 10.82 55.55 0.60 -20.94 16 19 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.21 -5.46 8.39 -38.68 -0.32 -5.78 16 24 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 25 H 0.06 1.03 7.07 -51.93 -0.37 0.67 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.73 7.84 -51.93 -0.41 0.33 16 28 H 0.08 0.66 6.29 -51.93 -0.33 0.34 16 29 H 0.07 0.58 6.54 -51.93 -0.34 0.24 16 30 H 0.07 0.65 7.46 -51.93 -0.39 0.26 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.38 6.31 -51.93 -0.33 0.05 16 35 H 0.40 5.47 7.78 -40.82 -0.32 5.15 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.12 3.30 6.18 -52.49 -0.32 2.98 16 39 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.11 2.90 6.44 -52.48 -0.34 2.56 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -32.77 324.48 -7.40 -40.17 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.54 Total: 9.05 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.55 Total: -17.53 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.55 Total: -33.01 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.72 Total: -18.13 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.77 -7.40 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313514552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.317 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds