Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46974 * 2 1 4 4 C 1.53003 * 109.47246 * 184.99986 * 3 2 1 5 5 O 1.42898 * 109.46969 * 65.00080 * 3 2 1 6 6 C 1.42905 * 114.00001 * 60.00169 * 5 3 2 7 7 C 1.50698 * 109.46963 * 304.99965 * 3 2 1 8 8 O 1.21295 * 119.99688 * 120.00403 * 7 3 2 9 9 N 1.34771 * 120.00210 * 299.99537 * 7 3 2 10 10 C 1.39941 * 120.00051 * 174.87395 * 9 7 3 11 11 C 1.39290 * 119.94943 * 146.39223 * 10 9 7 12 12 C 1.38483 * 120.42923 * 179.97438 * 11 10 9 13 13 C 1.37680 * 120.32604 * 0.02562 * 12 11 10 14 14 C 1.40744 * 119.88240 * 359.97438 * 13 12 11 15 15 C 1.41409 * 120.21222 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99886 * 151.74437 * 15 14 13 17 17 C 1.39931 * 119.99688 * 331.74854 * 15 14 13 18 18 N 1.30833 * 120.00312 * 349.00081 * 17 15 14 19 19 Si 1.86800 * 120.00046 * 169.00530 * 17 15 14 20 20 H 1.48506 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47229 * 119.99596 * 19 17 15 22 22 H 1.48496 * 109.47284 * 240.00013 * 19 17 15 23 23 C 1.38240 * 119.94614 * 326.12042 * 10 9 7 24 24 H 1.08997 * 109.47158 * 299.99491 * 1 2 3 25 25 H 1.09001 * 109.47212 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.46678 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47106 * 240.00285 * 2 1 3 28 28 H 1.09001 * 109.47334 * 120.00318 * 2 1 3 29 29 H 1.08998 * 109.47044 * 300.00186 * 4 3 2 30 30 H 1.09003 * 109.46767 * 59.99700 * 4 3 2 31 31 H 1.08993 * 109.47441 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47269 * 59.99822 * 6 5 3 33 33 H 1.09002 * 109.46754 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.46649 * 299.99608 * 6 5 3 35 35 H 0.97003 * 120.00189 * 354.88333 * 9 7 3 36 36 H 1.08002 * 119.78202 * 359.97438 * 11 10 9 37 37 H 1.08002 * 119.83670 * 180.02562 * 12 11 10 38 38 H 1.07995 * 120.05863 * 179.97438 * 13 12 11 39 39 H 0.96995 * 120.00278 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.16275 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 -0.1257 5 8 1.6619 2.0813 1.2211 6 6 2.1824 1.4501 2.3927 7 6 1.4391 2.1877 -1.1639 8 8 0.7544 3.1694 -0.9670 9 7 1.6625 1.7635 -2.4234 10 6 1.0189 2.3892 -3.4970 11 6 1.6671 2.5049 -4.7245 12 6 1.0394 3.1218 -5.7937 13 6 -0.2332 3.6284 -5.6547 14 6 -0.9006 3.5188 -4.4204 15 6 -2.2081 4.0362 -4.2700 16 1 -2.8845 3.5944 -3.5533 17 6 -2.6254 5.1205 -5.0498 18 7 -1.7531 5.7917 -5.7573 19 14 -4.4278 5.6099 -5.0808 20 1 -5.2035 4.6982 -4.2019 21 1 -4.5701 7.0061 -4.5953 22 1 -4.9430 5.5141 -6.4703 23 6 -0.2612 2.8866 -3.3393 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.9994 0.9054 0.7161 30 1 3.8532 0.9570 -1.0571 31 1 3.9281 2.4720 -0.1262 32 1 3.2717 1.4516 2.3528 33 1 1.8508 1.9949 3.2766 34 1 1.8220 0.4226 2.4423 35 1 2.2692 1.0243 -2.5858 36 1 2.6657 2.1110 -4.8431 37 1 1.5507 3.2059 -6.7413 38 1 -0.7185 4.1090 -6.4912 39 1 -2.0423 6.5435 -6.2976 40 1 -0.7665 2.7931 -2.3893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313514552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = -84.939909 kcal Electronic energy + Delta-G solvation = -21916.112464 eV Core-core repulsion = 18694.810851 eV Total energy + Delta-G solvation = -3221.301612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78474 -39.73157 -38.52092 -36.26432 -35.15821 -34.16394 -31.76115 -31.40802 -29.72182 -28.08600 -27.27390 -25.13994 -24.15099 -22.84791 -22.37325 -20.59899 -19.68942 -18.47676 -17.49395 -17.35048 -16.76090 -16.52489 -16.43169 -16.04510 -15.87027 -15.06242 -14.75523 -14.47154 -14.34158 -14.23788 -14.03412 -13.61829 -13.52277 -13.18113 -13.07198 -12.92789 -12.85235 -12.58509 -12.30208 -12.21979 -12.13463 -11.94943 -11.81599 -11.58139 -11.21298 -10.86864 -10.56821 -10.47426 -9.37274 -8.73679 -8.58974 -6.39953 0.84354 0.97762 1.34636 1.45701 1.50389 1.75572 1.89281 2.21101 2.74259 3.00691 3.50047 3.63047 3.71460 3.84698 4.20636 4.32406 4.45483 4.47260 4.50045 4.60669 4.62793 4.69730 4.76674 4.88258 4.96506 5.00748 5.03345 5.09245 5.11187 5.15182 5.21147 5.30330 5.32998 5.73550 5.83724 6.06332 6.09808 6.17454 6.34301 6.63461 6.68911 6.93187 6.99547 7.30363 8.36446 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023006 B = 0.004751 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.802692 B = 5891.550316 C = 6563.182044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.105 3.895 4 C -0.174 4.174 5 O -0.394 6.394 6 C 0.015 3.985 7 C 0.513 3.487 8 O -0.559 6.559 9 N -0.650 5.650 10 C 0.156 3.844 11 C -0.244 4.244 12 C -0.092 4.092 13 C -0.192 4.192 14 C 0.086 3.914 15 C -0.502 4.502 16 H 0.062 0.938 17 C 0.033 3.967 18 N -0.832 5.832 19 Si 0.985 3.015 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.255 1.255 23 C -0.233 4.233 24 H 0.047 0.953 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.421 0.579 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.287 0.713 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.495 -13.026 9.444 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.062 3.938 4 C -0.232 4.232 5 O -0.313 6.313 6 C -0.080 4.080 7 C 0.301 3.699 8 O -0.435 6.435 9 N -0.297 5.297 10 C 0.063 3.937 11 C -0.265 4.265 12 C -0.111 4.111 13 C -0.212 4.212 14 C 0.084 3.916 15 C -0.533 4.533 16 H 0.080 0.920 17 C -0.181 4.181 18 N -0.459 5.459 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.179 1.179 23 C -0.255 4.255 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.260 0.740 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.932 -11.992 9.505 18.243 hybrid contribution -0.714 0.340 -0.058 0.793 sum 9.218 -11.652 9.447 17.607 Atomic orbital electron populations 1.21750 0.96428 1.02411 1.00656 1.22205 0.96058 0.93122 1.06221 1.21483 0.96149 0.92519 0.83686 1.22456 0.91038 1.03714 1.05960 1.88078 1.74948 1.54477 1.13843 1.23136 0.99644 0.98919 0.86306 1.21015 0.80276 0.84058 0.84565 1.90768 1.39505 1.27983 1.85286 1.43204 1.46509 1.36005 1.04018 1.17507 0.90963 0.97429 0.87759 1.20512 1.01133 1.12078 0.92756 1.20874 0.94639 0.97271 0.98338 1.21366 0.96757 1.05650 0.97382 1.17858 0.93389 0.89436 0.90951 1.19770 0.98668 1.14632 1.20187 0.91965 1.26723 1.04220 0.94593 0.92538 1.69854 1.37107 1.16042 1.22858 0.85123 0.76258 0.78522 0.79517 1.18756 1.19140 1.17929 1.20915 0.95214 1.11795 0.97566 0.93347 0.96084 0.89905 0.88045 0.86886 0.87612 0.88587 0.92659 0.91553 0.89002 0.91727 0.74046 0.84560 0.85621 0.87551 0.90196 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.49 71.98 0.68 -3.30 16 2 C -0.14 -2.62 4.66 30.59 0.14 -2.48 16 3 C 0.10 2.71 0.67 -11.54 -0.01 2.70 16 4 C -0.17 -3.03 8.15 71.98 0.59 -2.45 16 5 O -0.39 -11.77 9.41 -129.94 -1.22 -12.99 16 6 C 0.02 0.27 10.22 113.37 1.16 1.42 16 7 C 0.51 19.62 4.79 87.66 0.42 20.04 16 8 O -0.56 -29.10 14.21 15.96 0.23 -28.87 16 9 N -0.65 -22.77 5.15 -303.65 -1.56 -24.33 16 10 C 0.16 7.17 6.26 38.10 0.24 7.41 16 11 C -0.24 -10.22 9.97 22.58 0.23 -10.00 16 12 C -0.09 -4.25 10.01 22.20 0.22 -4.02 16 13 C -0.19 -10.51 8.66 22.75 0.20 -10.31 16 14 C 0.09 5.12 5.55 -21.30 -0.12 5.00 16 15 C -0.50 -30.12 9.06 23.46 0.21 -29.91 16 16 H 0.06 3.72 7.87 -2.91 -0.02 3.70 16 17 C 0.03 1.78 5.25 85.25 0.45 2.23 16 18 N -0.83 -46.41 10.82 21.82 0.24 -46.17 16 19 Si 0.99 41.64 29.57 68.60 2.03 43.66 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 C -0.23 -13.03 8.39 22.85 0.19 -12.84 16 24 H 0.05 1.35 7.82 -2.39 -0.02 1.33 16 25 H 0.02 0.70 7.07 -2.39 -0.02 0.68 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.10 1.45 7.84 -2.38 -0.02 1.43 16 28 H 0.11 1.38 6.29 -2.39 -0.02 1.36 16 29 H 0.11 1.13 6.54 -2.39 -0.02 1.12 16 30 H 0.10 1.22 7.46 -2.39 -0.02 1.20 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 0.84 6.42 -2.39 -0.02 0.83 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 0.85 6.31 -2.39 -0.02 0.83 16 35 H 0.42 10.22 7.78 -92.71 -0.72 9.49 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.11 6.05 6.18 -2.91 -0.02 6.04 16 39 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 40 H 0.08 4.75 6.44 -2.91 -0.02 4.73 16 Total: -1.00 -79.77 324.48 4.64 -75.13 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.33 Total: 30.07 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.60 Total: -36.50 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.33 Total: -70.50 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.00 Total: -41.86 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -79.77 4.64 -75.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313514552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.809 kcal (2) G-P(sol) polarization free energy of solvation -79.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds