Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 C 1.53005 * 109.46985 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47441 * 300.00460 * 3 2 1 6 6 C 1.42896 * 113.99560 * 299.99764 * 5 3 2 7 7 C 1.50705 * 109.46693 * 60.00419 * 3 2 1 8 8 O 1.21287 * 119.99490 * 239.99708 * 7 3 2 9 9 N 1.34776 * 120.00123 * 59.99870 * 7 3 2 10 10 C 1.39934 * 119.99910 * 174.88976 * 9 7 3 11 11 C 1.39289 * 119.94862 * 325.55016 * 10 9 7 12 12 C 1.38492 * 120.42567 * 179.75994 * 11 10 9 13 13 C 1.37683 * 120.32331 * 0.51218 * 12 11 10 14 14 C 1.40736 * 119.88617 * 359.74748 * 13 12 11 15 15 C 1.41406 * 120.21094 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00229 * 25.12671 * 15 14 13 17 17 C 1.39931 * 119.99821 * 205.13011 * 15 14 13 18 18 N 1.30833 * 120.00239 * 16.78201 * 17 15 14 19 19 Si 1.86798 * 120.00033 * 196.78728 * 17 15 14 20 20 H 1.48499 * 109.47386 * 59.99662 * 19 17 15 21 21 H 1.48500 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47030 * 299.99986 * 19 17 15 23 23 C 1.38245 * 119.94599 * 145.82117 * 10 9 7 24 24 H 1.09000 * 109.47281 * 299.99681 * 1 2 3 25 25 H 1.08994 * 109.47284 * 59.99555 * 1 2 3 26 26 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47281 * 240.00319 * 2 1 3 28 28 H 1.09000 * 109.47676 * 120.00476 * 2 1 3 29 29 H 1.09001 * 109.46777 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47356 * 299.99939 * 4 3 2 31 31 H 1.08998 * 109.46746 * 60.00603 * 4 3 2 32 32 H 1.09003 * 109.47039 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47563 * 299.99794 * 6 5 3 34 34 H 1.08997 * 109.47376 * 59.99866 * 6 5 3 35 35 H 0.96998 * 120.00429 * 354.89280 * 9 7 3 36 36 H 1.08000 * 119.78607 * 0.02562 * 11 10 9 37 37 H 1.08012 * 119.83623 * 180.23805 * 12 11 10 38 38 H 1.08007 * 120.05284 * 179.76487 * 13 12 11 39 39 H 0.97003 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.15912 * 359.95867 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 1.5636 2.1162 -1.1667 6 6 1.9852 1.5200 -2.3949 7 6 1.5376 2.1528 1.2306 8 8 0.8403 3.1389 1.1193 9 7 1.8633 1.6923 2.4546 10 6 1.4875 2.4106 3.5952 11 6 1.4559 3.8027 3.5612 12 6 1.0807 4.5233 4.6828 13 6 0.7447 3.8711 5.8478 14 6 0.7772 2.4650 5.8987 15 6 0.4329 1.7881 7.0915 16 1 -0.2206 2.2595 7.8106 17 6 0.9390 0.5074 7.3402 18 7 1.9665 0.0668 6.6607 19 14 0.1474 -0.5731 8.6422 20 1 -1.2752 -0.8118 8.2894 21 1 0.8652 -1.8712 8.7115 22 1 0.2232 0.1049 9.9612 23 6 1.1536 1.7376 4.7557 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9333 2.4702 0.0011 30 1 3.9330 0.9288 0.8908 31 1 3.9336 0.9286 -0.8892 32 1 1.5828 2.0899 -3.2325 33 1 3.0741 1.5216 -2.4447 34 1 1.6208 0.4939 -2.4447 35 1 2.3581 0.8629 2.5450 36 1 1.7216 4.3233 2.6531 37 1 1.0558 5.6025 4.6446 38 1 0.4564 4.4376 6.7210 39 1 2.3171 -0.8212 6.8329 40 1 1.1813 0.6584 4.7842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313514553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = -66.299000 kcal Electronic energy + Delta-G solvation = -21931.682911 eV Core-core repulsion = 18711.189629 eV Total energy + Delta-G solvation = -3220.493282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37962 -38.29919 -36.87431 -34.39636 -33.68097 -32.92175 -30.38409 -29.52774 -28.23039 -27.24418 -25.24704 -24.06319 -22.75353 -21.20669 -20.61144 -19.20721 -17.66883 -17.23938 -16.19023 -15.72849 -15.54476 -14.92432 -14.83842 -14.71346 -14.45237 -13.47127 -13.35991 -13.31994 -13.00231 -12.76585 -12.55928 -12.30201 -12.29917 -11.94875 -11.63431 -11.37585 -11.27222 -11.12851 -11.10276 -10.92502 -10.70848 -10.60489 -9.99888 -9.72186 -9.64417 -9.36696 -9.14367 -8.85861 -7.37371 -7.01012 -6.69215 -4.36937 2.57818 2.86747 3.05526 3.09345 3.16426 3.21488 3.38101 3.93182 4.07590 4.50707 4.63440 4.83076 4.87441 5.10900 5.17489 5.24615 5.31040 5.45947 5.51242 5.58140 5.69231 5.73561 5.86621 5.98906 6.01450 6.28641 6.33054 6.65264 6.70043 6.86908 7.02967 7.05903 7.11764 7.26293 7.62594 7.70144 7.94337 8.03441 8.17549 8.32809 8.56533 8.77135 8.89169 8.96503 10.18963 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022800 B = 0.004831 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.800450 B = 5794.386088 C = 6515.287004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.147 4.147 3 C 0.099 3.901 4 C -0.178 4.178 5 O -0.351 6.351 6 C 0.023 3.977 7 C 0.523 3.477 8 O -0.504 6.504 9 N -0.661 5.661 10 C 0.147 3.853 11 C -0.227 4.227 12 C -0.085 4.085 13 C -0.228 4.228 14 C 0.121 3.879 15 C -0.464 4.464 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.181 4.181 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.400 0.600 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.279 0.721 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -4.749 -12.233 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.056 3.944 4 C -0.235 4.235 5 O -0.269 6.269 6 C -0.074 4.074 7 C 0.307 3.693 8 O -0.377 6.377 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.248 4.248 12 C -0.104 4.104 13 C -0.248 4.248 14 C 0.118 3.882 15 C -0.494 4.494 16 H 0.096 0.904 17 C -0.139 4.139 18 N -0.426 5.426 19 Si 0.732 3.268 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.203 4.203 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.235 0.765 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.850 -4.066 -12.367 13.326 hybrid contribution 0.239 -1.264 0.548 1.398 sum 3.089 -5.330 -11.819 13.328 Atomic orbital electron populations 1.21726 0.94321 1.01687 1.03228 1.22152 0.98066 0.94842 1.03424 1.21442 0.94038 0.92212 0.86716 1.22407 0.93826 1.03879 1.03408 1.88102 1.73869 1.52655 1.12243 1.22855 0.99295 0.98566 0.86670 1.19827 0.80730 0.85033 0.83684 1.90722 1.35374 1.25553 1.86075 1.43380 1.56451 1.26288 1.04503 1.17578 1.00696 0.90812 0.85320 1.20311 1.13834 0.91946 0.98714 1.20422 0.99466 0.97297 0.93238 1.21042 1.12118 0.94524 0.97078 1.17350 0.88241 0.90625 0.92003 1.19506 1.26554 0.99537 1.03795 0.90401 1.25859 0.93280 0.98045 0.96733 1.69809 1.17567 1.18132 1.37134 0.86387 0.80385 0.78871 0.81179 1.18880 1.20422 1.19029 1.21060 1.08263 0.99707 0.91225 0.92048 0.91949 0.92401 0.90611 0.90287 0.90969 0.90606 0.91121 0.89461 0.93759 0.93681 0.76497 0.88135 0.89007 0.88851 0.91028 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.52 37.16 0.35 -1.64 16 2 C -0.15 -1.71 4.51 -26.73 -0.12 -1.83 16 3 C 0.10 1.40 0.67 -91.77 -0.06 1.34 16 4 C -0.18 -2.02 8.15 37.16 0.30 -1.72 16 5 O -0.35 -5.26 9.21 -55.14 -0.51 -5.77 16 6 C 0.02 0.23 10.21 101.05 1.03 1.26 16 7 C 0.52 9.90 5.02 -10.98 -0.06 9.85 16 8 O -0.50 -11.77 14.24 -14.36 -0.20 -11.97 16 9 N -0.66 -12.68 5.11 -9.91 -0.05 -12.73 16 10 C 0.15 3.49 6.25 -83.77 -0.52 2.97 16 11 C -0.23 -5.53 8.66 -39.10 -0.34 -5.87 16 12 C -0.09 -2.04 10.02 -39.69 -0.40 -2.43 16 13 C -0.23 -5.71 9.79 -38.84 -0.38 -6.09 16 14 C 0.12 3.22 5.57 -106.85 -0.59 2.63 16 15 C -0.46 -12.22 9.05 -37.74 -0.34 -12.56 16 16 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 17 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 18 N -0.80 -19.94 10.94 55.55 0.61 -19.34 16 19 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 23 C -0.18 -4.61 8.60 -38.68 -0.33 -4.95 16 24 H 0.06 0.99 7.22 -51.93 -0.37 0.61 16 25 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.69 6.54 -51.93 -0.34 0.35 16 28 H 0.08 0.85 7.46 -51.93 -0.39 0.46 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 31 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 34 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 35 H 0.40 6.48 7.68 -40.82 -0.31 6.17 16 36 H 0.10 2.45 6.47 -52.49 -0.34 2.11 16 37 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 39 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 40 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -30.84 324.61 -7.39 -38.23 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.55 Total: 10.54 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.55 Total: -17.24 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.56 Total: -32.07 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.71 Total: -17.74 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.84 -7.39 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313514553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.073 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds