Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 C 1.53005 * 109.46985 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47441 * 300.00460 * 3 2 1 6 6 C 1.42896 * 113.99560 * 299.99764 * 5 3 2 7 7 C 1.50705 * 109.46693 * 60.00419 * 3 2 1 8 8 O 1.21287 * 119.99490 * 239.99708 * 7 3 2 9 9 N 1.34776 * 120.00123 * 59.99870 * 7 3 2 10 10 C 1.39934 * 119.99910 * 174.88976 * 9 7 3 11 11 C 1.39289 * 119.94862 * 325.55016 * 10 9 7 12 12 C 1.38492 * 120.42567 * 179.75994 * 11 10 9 13 13 C 1.37683 * 120.32331 * 0.51218 * 12 11 10 14 14 C 1.40736 * 119.88617 * 359.74748 * 13 12 11 15 15 C 1.41406 * 120.21094 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00229 * 25.12671 * 15 14 13 17 17 C 1.39931 * 119.99821 * 205.13011 * 15 14 13 18 18 N 1.30833 * 120.00239 * 16.78201 * 17 15 14 19 19 Si 1.86798 * 120.00033 * 196.78728 * 17 15 14 20 20 H 1.48499 * 109.47386 * 59.99662 * 19 17 15 21 21 H 1.48500 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47030 * 299.99986 * 19 17 15 23 23 C 1.38245 * 119.94599 * 145.82117 * 10 9 7 24 24 H 1.09000 * 109.47281 * 299.99681 * 1 2 3 25 25 H 1.08994 * 109.47284 * 59.99555 * 1 2 3 26 26 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47281 * 240.00319 * 2 1 3 28 28 H 1.09000 * 109.47676 * 120.00476 * 2 1 3 29 29 H 1.09001 * 109.46777 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47356 * 299.99939 * 4 3 2 31 31 H 1.08998 * 109.46746 * 60.00603 * 4 3 2 32 32 H 1.09003 * 109.47039 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47563 * 299.99794 * 6 5 3 34 34 H 1.08997 * 109.47376 * 59.99866 * 6 5 3 35 35 H 0.96998 * 120.00429 * 354.89280 * 9 7 3 36 36 H 1.08000 * 119.78607 * 0.02562 * 11 10 9 37 37 H 1.08012 * 119.83623 * 180.23805 * 12 11 10 38 38 H 1.08007 * 120.05284 * 179.76487 * 13 12 11 39 39 H 0.97003 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.15912 * 359.95867 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 1.5636 2.1162 -1.1667 6 6 1.9852 1.5200 -2.3949 7 6 1.5376 2.1528 1.2306 8 8 0.8403 3.1389 1.1193 9 7 1.8633 1.6923 2.4546 10 6 1.4875 2.4106 3.5952 11 6 1.4559 3.8027 3.5612 12 6 1.0807 4.5233 4.6828 13 6 0.7447 3.8711 5.8478 14 6 0.7772 2.4650 5.8987 15 6 0.4329 1.7881 7.0915 16 1 -0.2206 2.2595 7.8106 17 6 0.9390 0.5074 7.3402 18 7 1.9665 0.0668 6.6607 19 14 0.1474 -0.5731 8.6422 20 1 -1.2752 -0.8118 8.2894 21 1 0.8652 -1.8712 8.7115 22 1 0.2232 0.1049 9.9612 23 6 1.1536 1.7376 4.7557 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9333 2.4702 0.0011 30 1 3.9330 0.9288 0.8908 31 1 3.9336 0.9286 -0.8892 32 1 1.5828 2.0899 -3.2325 33 1 3.0741 1.5216 -2.4447 34 1 1.6208 0.4939 -2.4447 35 1 2.3581 0.8629 2.5450 36 1 1.7216 4.3233 2.6531 37 1 1.0558 5.6025 4.6446 38 1 0.4564 4.4376 6.7210 39 1 2.3171 -0.8212 6.8329 40 1 1.1813 0.6584 4.7842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313514553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = -84.758344 kcal Electronic energy + Delta-G solvation = -21932.483368 eV Core-core repulsion = 18711.189629 eV Total energy + Delta-G solvation = -3221.293739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76948 -39.74482 -38.53194 -36.07565 -35.30693 -34.27483 -31.54011 -31.37073 -29.94889 -28.09285 -27.18336 -25.14961 -24.06450 -23.09192 -22.19192 -20.70926 -19.29452 -18.80289 -17.52076 -17.23561 -16.84836 -16.48211 -16.40437 -16.02857 -15.95398 -15.07082 -14.70219 -14.40186 -14.33503 -14.19321 -14.13973 -13.67857 -13.48685 -13.15005 -13.06009 -12.91619 -12.82746 -12.59683 -12.37297 -12.29306 -12.10343 -11.89510 -11.77069 -11.58493 -11.15302 -10.91479 -10.58279 -10.50304 -9.34335 -8.87338 -8.55296 -6.35530 0.79600 1.03715 1.41285 1.50007 1.53551 1.72243 1.89320 2.23277 2.75488 2.99416 3.48173 3.60479 3.71939 3.82860 4.19910 4.31621 4.43600 4.47477 4.51139 4.59668 4.68205 4.70366 4.75764 4.83770 4.88417 4.95654 5.01196 5.09314 5.12417 5.14271 5.20025 5.29255 5.35400 5.76591 5.82965 6.00896 6.07881 6.13555 6.34279 6.57048 6.71198 6.93599 6.97235 7.24121 8.34813 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022800 B = 0.004831 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.800450 B = 5794.386088 C = 6515.287004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.106 3.894 4 C -0.175 4.175 5 O -0.388 6.388 6 C 0.015 3.985 7 C 0.518 3.482 8 O -0.555 6.555 9 N -0.653 5.653 10 C 0.153 3.847 11 C -0.244 4.244 12 C -0.084 4.084 13 C -0.248 4.248 14 C 0.094 3.906 15 C -0.499 4.499 16 H 0.076 0.924 17 C 0.041 3.959 18 N -0.820 5.820 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.264 1.264 22 H -0.262 1.262 23 C -0.200 4.200 24 H 0.020 0.980 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.290 0.710 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -6.929 -13.134 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.064 3.936 4 C -0.232 4.232 5 O -0.307 6.307 6 C -0.081 4.081 7 C 0.306 3.694 8 O -0.432 6.432 9 N -0.300 5.300 10 C 0.060 3.940 11 C -0.265 4.265 12 C -0.103 4.103 13 C -0.268 4.268 14 C 0.091 3.909 15 C -0.528 4.528 16 H 0.094 0.906 17 C -0.175 4.175 18 N -0.445 5.445 19 Si 0.801 3.199 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.222 4.222 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.799 -6.267 -13.296 15.182 hybrid contribution -0.034 -0.553 0.740 0.924 sum 3.765 -6.820 -12.556 14.777 Atomic orbital electron populations 1.21714 0.95760 1.02421 1.00992 1.22216 0.96717 0.93338 1.05807 1.21397 0.95544 0.92429 0.84280 1.22435 0.91382 1.03690 1.05696 1.88055 1.74800 1.54086 1.13730 1.23136 1.00687 0.99494 0.84744 1.20888 0.79354 0.84388 0.84774 1.90684 1.37641 1.28015 1.86844 1.43327 1.56319 1.26525 1.03785 1.17644 0.99131 0.90987 0.86257 1.20456 1.14777 0.92503 0.98794 1.20719 0.98201 0.98748 0.92604 1.21212 1.13255 0.94377 0.97984 1.17761 0.88746 0.91614 0.92809 1.19773 1.27715 1.01202 1.04150 0.90584 1.26671 0.93320 0.98568 0.98925 1.69835 1.17890 1.18878 1.37939 0.85279 0.79192 0.77231 0.78164 1.18850 1.18816 1.18586 1.21017 1.09969 0.99387 0.91805 0.96079 0.92379 0.90144 0.86801 0.89217 0.92444 0.89608 0.87555 0.88607 0.91841 0.91855 0.74743 0.88455 0.86389 0.87987 0.89939 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.52 71.98 0.69 -3.11 16 2 C -0.14 -2.94 4.51 30.59 0.14 -2.80 16 3 C 0.11 2.84 0.67 -11.54 -0.01 2.83 16 4 C -0.17 -3.50 8.15 71.98 0.59 -2.92 16 5 O -0.39 -11.12 9.21 -129.94 -1.20 -12.31 16 6 C 0.01 0.25 10.21 113.37 1.16 1.41 16 7 C 0.52 19.82 5.02 87.66 0.44 20.26 16 8 O -0.56 -26.82 14.24 15.99 0.23 -26.59 16 9 N -0.65 -25.32 5.11 -303.64 -1.55 -26.87 16 10 C 0.15 7.42 6.25 38.10 0.24 7.66 16 11 C -0.24 -12.21 8.66 22.58 0.20 -12.02 16 12 C -0.08 -4.09 10.02 22.20 0.22 -3.86 16 13 C -0.25 -12.82 9.79 22.75 0.22 -12.60 16 14 C 0.09 5.15 5.57 -21.31 -0.12 5.03 16 15 C -0.50 -26.86 9.05 23.46 0.21 -26.65 16 16 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 17 C 0.04 1.99 5.16 85.25 0.44 2.43 16 18 N -0.82 -40.75 10.94 21.82 0.24 -40.51 16 19 Si 0.98 37.21 29.59 68.60 2.03 39.24 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 23 C -0.20 -10.50 8.60 22.85 0.20 -10.30 16 24 H 0.02 0.67 7.22 -2.39 -0.02 0.65 16 25 H 0.06 1.48 7.68 -2.39 -0.02 1.46 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.11 1.53 6.54 -2.39 -0.02 1.51 16 28 H 0.09 1.66 7.46 -2.39 -0.02 1.65 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.54 7.68 -2.39 -0.02 1.52 16 31 H 0.11 1.38 6.55 -2.39 -0.02 1.37 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 0.82 6.42 -2.39 -0.02 0.80 16 34 H 0.06 0.83 6.42 -2.39 -0.02 0.81 16 35 H 0.42 13.26 7.68 -92.71 -0.71 12.54 16 36 H 0.10 4.89 6.47 -2.91 -0.02 4.87 16 37 H 0.12 4.96 8.06 -2.90 -0.02 4.94 16 38 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 40 H 0.12 6.13 6.17 -2.91 -0.02 6.11 16 Total: -1.00 -69.72 324.61 4.70 -65.02 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.34 Total: 36.64 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.61 Total: -34.63 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.31 Total: -67.38 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.97 Total: -38.90 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -69.72 4.70 -65.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313514553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.738 kcal (2) G-P(sol) polarization free energy of solvation -69.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds