Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99620 * 2 1 4 4 C 1.52999 * 109.47073 * 60.00169 * 3 2 1 5 5 C 1.52997 * 109.47526 * 299.99779 * 3 2 1 6 6 C 1.53007 * 109.46657 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47288 * 303.09833 * 6 3 2 8 8 O 1.21283 * 119.99800 * 6.11170 * 7 6 3 9 9 N 1.34778 * 119.99710 * 186.11122 * 7 6 3 10 10 C 1.39939 * 119.99925 * 174.92404 * 9 7 6 11 11 C 1.39285 * 119.94878 * 147.35889 * 10 9 7 12 12 C 1.38484 * 120.43048 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.31748 * 359.97438 * 12 11 10 14 14 C 1.40736 * 119.88946 * 0.02562 * 13 12 11 15 15 C 1.41408 * 120.21199 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99859 * 206.53566 * 15 14 13 17 17 C 1.39930 * 119.99924 * 26.53753 * 15 14 13 18 18 N 1.30826 * 120.00253 * 13.02377 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 193.02929 * 17 15 14 20 20 H 1.48496 * 109.47072 * 94.97778 * 19 17 15 21 21 H 1.48502 * 109.47170 * 214.97664 * 19 17 15 22 22 H 1.48502 * 109.46945 * 334.97804 * 19 17 15 23 23 C 1.38241 * 119.94546 * 327.08039 * 10 9 7 24 24 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47041 * 299.99937 * 1 2 3 26 26 H 1.09001 * 109.47385 * 59.99657 * 1 2 3 27 27 H 1.08997 * 109.47060 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47532 * 299.99820 * 4 3 2 29 29 H 1.09010 * 109.46841 * 59.99969 * 4 3 2 30 30 H 1.09003 * 109.47146 * 306.34359 * 5 3 2 31 31 H 1.09004 * 109.46561 * 66.33830 * 5 3 2 32 32 H 1.08998 * 109.47203 * 186.33894 * 5 3 2 33 33 H 1.09007 * 109.47009 * 63.10266 * 6 3 2 34 34 H 1.09002 * 109.47003 * 183.09392 * 6 3 2 35 35 H 0.96999 * 120.00096 * 354.91534 * 9 7 6 36 36 H 1.08003 * 119.78451 * 359.97162 * 11 10 9 37 37 H 1.08001 * 119.84583 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.05203 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.15759 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5586 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1847 0.0006 7 6 3.9744 0.3718 1.1912 8 8 3.1470 -0.1604 1.9005 9 7 5.2866 0.2362 1.4677 10 6 5.6915 -0.4281 2.6309 11 6 6.8758 -1.1613 2.6364 12 6 7.2863 -1.8222 3.7821 13 6 6.5275 -1.7609 4.9294 14 6 5.3285 -1.0240 4.9388 15 6 4.5437 -0.9569 6.1132 16 1 3.4795 -0.7877 6.0424 17 6 5.1461 -1.1099 7.3669 18 7 6.4487 -1.0595 7.4773 19 14 4.0902 -1.3862 8.8829 20 1 3.9810 -2.8427 9.1513 21 1 4.7143 -0.7132 10.0503 22 1 2.7358 -0.8225 8.6523 23 6 4.9185 -0.3509 3.7743 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 2.0023 3.0603 1.2495 28 1 0.4721 2.1508 1.2493 29 1 1.8804 1.5237 2.1393 30 1 1.7802 1.4703 -2.1356 31 1 0.4858 2.2493 -1.1943 32 1 2.0884 3.0156 -1.3077 33 1 3.8613 0.6923 -0.9157 34 1 3.9786 2.1790 0.0561 35 1 5.9502 0.5991 0.8604 36 1 7.4778 -1.2148 1.7413 37 1 8.2060 -2.3883 3.7757 38 1 6.8519 -2.2776 5.8206 39 1 6.8662 -1.1658 8.3464 40 1 4.0021 0.2208 3.7722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313515891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = -65.083631 kcal Electronic energy + Delta-G solvation = -21636.549440 eV Core-core repulsion = 18416.108860 eV Total energy + Delta-G solvation = -3220.440580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99529 -38.44530 -36.91402 -34.32870 -33.30617 -32.90616 -29.75022 -29.21876 -27.48861 -27.38549 -26.21211 -25.22214 -21.76829 -20.82344 -19.96779 -19.36401 -17.67938 -16.82567 -16.12398 -15.64557 -15.33745 -14.95963 -14.86394 -14.69444 -14.39475 -13.58702 -13.30126 -13.14909 -12.88185 -12.61522 -12.38038 -12.21320 -12.00132 -11.75182 -11.59477 -11.51451 -11.29065 -11.09834 -10.97967 -10.84131 -10.52961 -10.39415 -10.05145 -9.57090 -9.44104 -9.26237 -8.98534 -8.76863 -7.37087 -6.81716 -6.61410 -4.28952 2.71511 2.90270 3.12919 3.18162 3.25211 3.48325 3.73616 3.86989 4.01580 4.64588 4.72817 4.85458 4.96298 5.31393 5.33848 5.39134 5.47824 5.49892 5.52923 5.63516 5.75069 5.79553 5.85430 5.97326 6.04764 6.30864 6.44764 6.49718 6.89109 7.09303 7.12881 7.14804 7.33512 7.38651 7.66002 7.80931 8.05027 8.17284 8.27774 8.36868 8.72217 8.87713 9.01840 9.06107 10.29802 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.004651 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.823454 B = 6019.209793 C = 7002.831257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.128 3.872 4 C -0.186 4.186 5 C -0.177 4.177 6 C -0.128 4.128 7 C 0.503 3.497 8 O -0.494 6.494 9 N -0.675 5.675 10 C 0.153 3.847 11 C -0.261 4.261 12 C -0.094 4.094 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.801 5.801 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.209 4.209 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.278 0.722 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 6.244 -13.207 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.088 3.912 4 C -0.243 4.243 5 C -0.235 4.235 6 C -0.169 4.169 7 C 0.289 3.711 8 O -0.367 6.367 9 N -0.319 5.319 10 C 0.061 3.939 11 C -0.283 4.283 12 C -0.113 4.113 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.428 5.428 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.230 4.230 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.229 0.771 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.079 5.723 -12.523 15.051 hybrid contribution -0.139 0.369 0.316 0.505 sum -6.217 6.092 -12.207 14.993 Atomic orbital electron populations 1.22703 0.82184 1.02345 0.99486 1.88105 1.18772 1.26043 1.94778 1.21097 0.91701 0.84179 0.94234 1.22560 1.01368 1.00415 0.99994 1.22438 1.01968 1.00870 0.98199 1.21760 0.95053 1.01475 0.98579 1.20389 0.82455 0.81752 0.86471 1.90745 1.51354 1.45155 1.49426 1.43532 1.07146 1.57309 1.23933 1.17444 0.95728 0.95856 0.84835 1.20055 1.00113 1.09522 0.98571 1.20473 0.98310 0.99161 0.93404 1.21399 0.97620 1.02832 0.97173 1.17508 0.91588 0.87874 0.91477 1.19586 0.95843 1.43329 0.90035 0.90484 1.25880 0.95098 0.92410 1.00832 1.69813 1.10328 1.36408 1.26216 0.86280 0.80907 0.79284 0.80109 1.19427 1.20361 1.18629 1.21005 1.02527 1.06963 0.92527 0.90079 0.93861 0.94618 0.92212 0.92508 0.89359 0.91752 0.92039 0.91451 0.88493 0.88045 0.77088 0.89400 0.89141 0.86115 0.91106 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.21 101.05 1.03 1.39 16 2 O -0.36 -5.54 8.88 -56.01 -0.50 -6.04 16 3 C 0.13 1.63 0.71 -90.62 -0.06 1.56 16 4 C -0.19 -2.47 7.97 37.16 0.30 -2.17 16 5 C -0.18 -1.63 8.06 37.16 0.30 -1.33 16 6 C -0.13 -1.60 4.97 -27.88 -0.14 -1.73 16 7 C 0.50 9.04 7.05 -10.99 -0.08 8.96 16 8 O -0.49 -11.05 10.85 -15.22 -0.17 -11.22 16 9 N -0.67 -12.23 5.34 -9.91 -0.05 -12.28 16 10 C 0.15 3.55 6.28 -83.77 -0.53 3.02 16 11 C -0.26 -5.91 9.96 -39.10 -0.39 -6.30 16 12 C -0.09 -2.27 10.02 -39.69 -0.40 -2.66 16 13 C -0.17 -4.58 8.68 -38.84 -0.34 -4.92 16 14 C 0.12 3.33 5.57 -106.85 -0.59 2.73 16 15 C -0.46 -12.82 9.06 -37.74 -0.34 -13.16 16 16 H 0.08 2.13 7.88 -52.49 -0.41 1.72 16 17 C 0.07 1.93 5.22 -17.35 -0.09 1.84 16 18 N -0.80 -21.26 10.81 55.55 0.60 -20.66 16 19 Si 0.91 19.50 29.58 -169.99 -5.03 14.47 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.21 -5.51 8.40 -38.69 -0.32 -5.84 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.52 6.42 -51.93 -0.33 0.18 16 26 H 0.04 0.34 6.56 -51.93 -0.34 0.00 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 29 H 0.09 1.51 6.01 -51.92 -0.31 1.20 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.53 6.90 -51.93 -0.36 0.17 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.40 5.51 8.82 -40.82 -0.36 5.15 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.33 6.12 -52.49 -0.32 3.01 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.11 2.88 6.36 -52.48 -0.33 2.55 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -32.18 323.81 -7.55 -39.73 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.63 Total: 9.72 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.66 Total: -18.61 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.55 Total: -32.94 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.66 Total: -17.25 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.18 -7.55 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313515891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.356 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds