Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99620 * 2 1 4 4 C 1.52999 * 109.47073 * 60.00169 * 3 2 1 5 5 C 1.52997 * 109.47526 * 299.99779 * 3 2 1 6 6 C 1.53007 * 109.46657 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47288 * 303.09833 * 6 3 2 8 8 O 1.21283 * 119.99800 * 6.11170 * 7 6 3 9 9 N 1.34778 * 119.99710 * 186.11122 * 7 6 3 10 10 C 1.39939 * 119.99925 * 174.92404 * 9 7 6 11 11 C 1.39285 * 119.94878 * 147.35889 * 10 9 7 12 12 C 1.38484 * 120.43048 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.31748 * 359.97438 * 12 11 10 14 14 C 1.40736 * 119.88946 * 0.02562 * 13 12 11 15 15 C 1.41408 * 120.21199 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99859 * 206.53566 * 15 14 13 17 17 C 1.39930 * 119.99924 * 26.53753 * 15 14 13 18 18 N 1.30826 * 120.00253 * 13.02377 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 193.02929 * 17 15 14 20 20 H 1.48496 * 109.47072 * 94.97778 * 19 17 15 21 21 H 1.48502 * 109.47170 * 214.97664 * 19 17 15 22 22 H 1.48502 * 109.46945 * 334.97804 * 19 17 15 23 23 C 1.38241 * 119.94546 * 327.08039 * 10 9 7 24 24 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47041 * 299.99937 * 1 2 3 26 26 H 1.09001 * 109.47385 * 59.99657 * 1 2 3 27 27 H 1.08997 * 109.47060 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47532 * 299.99820 * 4 3 2 29 29 H 1.09010 * 109.46841 * 59.99969 * 4 3 2 30 30 H 1.09003 * 109.47146 * 306.34359 * 5 3 2 31 31 H 1.09004 * 109.46561 * 66.33830 * 5 3 2 32 32 H 1.08998 * 109.47203 * 186.33894 * 5 3 2 33 33 H 1.09007 * 109.47009 * 63.10266 * 6 3 2 34 34 H 1.09002 * 109.47003 * 183.09392 * 6 3 2 35 35 H 0.96999 * 120.00096 * 354.91534 * 9 7 6 36 36 H 1.08003 * 119.78451 * 359.97162 * 11 10 9 37 37 H 1.08001 * 119.84583 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.05203 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99977 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.15759 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5586 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1847 0.0006 7 6 3.9744 0.3718 1.1912 8 8 3.1470 -0.1604 1.9005 9 7 5.2866 0.2362 1.4677 10 6 5.6915 -0.4281 2.6309 11 6 6.8758 -1.1613 2.6364 12 6 7.2863 -1.8222 3.7821 13 6 6.5275 -1.7609 4.9294 14 6 5.3285 -1.0240 4.9388 15 6 4.5437 -0.9569 6.1132 16 1 3.4795 -0.7877 6.0424 17 6 5.1461 -1.1099 7.3669 18 7 6.4487 -1.0595 7.4773 19 14 4.0902 -1.3862 8.8829 20 1 3.9810 -2.8427 9.1513 21 1 4.7143 -0.7132 10.0503 22 1 2.7358 -0.8225 8.6523 23 6 4.9185 -0.3509 3.7743 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 2.0023 3.0603 1.2495 28 1 0.4721 2.1508 1.2493 29 1 1.8804 1.5237 2.1393 30 1 1.7802 1.4703 -2.1356 31 1 0.4858 2.2493 -1.1943 32 1 2.0884 3.0156 -1.3077 33 1 3.8613 0.6923 -0.9157 34 1 3.9786 2.1790 0.0561 35 1 5.9502 0.5991 0.8604 36 1 7.4778 -1.2148 1.7413 37 1 8.2060 -2.3883 3.7757 38 1 6.8519 -2.2776 5.8206 39 1 6.8662 -1.1658 8.3464 40 1 4.0021 0.2208 3.7722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313515891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = -85.411313 kcal Electronic energy + Delta-G solvation = -21637.430914 eV Core-core repulsion = 18416.108860 eV Total energy + Delta-G solvation = -3221.322054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37593 -39.75840 -38.61360 -36.11591 -34.77060 -34.30048 -31.73192 -30.66036 -28.83673 -28.26316 -27.36502 -27.15698 -23.42951 -22.71372 -21.36423 -20.65048 -19.48581 -18.21287 -17.41588 -17.22626 -16.87281 -16.45933 -16.20273 -16.09791 -15.85843 -14.98632 -14.92096 -14.57885 -14.24608 -13.97788 -13.79869 -13.48265 -13.22941 -13.02328 -12.89967 -12.88045 -12.80037 -12.67297 -12.45918 -12.19050 -12.17431 -11.89777 -11.49105 -11.46448 -11.14380 -10.77565 -10.56788 -10.26660 -9.36939 -8.70359 -8.54712 -6.37921 0.91587 1.02288 1.34979 1.47631 1.49339 1.94706 2.20688 2.34670 2.76166 2.92775 3.68815 3.74383 3.86319 4.06250 4.25037 4.46668 4.48420 4.55238 4.58819 4.63486 4.65429 4.70306 4.73767 4.90716 4.92570 5.06091 5.09550 5.12864 5.16028 5.24538 5.29741 5.35541 5.46737 5.80867 5.89325 6.09098 6.14524 6.37380 6.44255 6.70339 6.78188 6.95471 7.03056 7.49854 8.35757 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.004651 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.823454 B = 6019.209793 C = 7002.831257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.119 3.881 4 C -0.184 4.184 5 C -0.167 4.167 6 C -0.119 4.119 7 C 0.495 3.505 8 O -0.544 6.544 9 N -0.666 5.666 10 C 0.160 3.840 11 C -0.252 4.252 12 C -0.094 4.094 13 C -0.198 4.198 14 C 0.087 3.913 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.036 3.964 18 N -0.827 5.827 19 Si 0.982 3.018 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.266 1.266 23 C -0.235 4.235 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.420 0.580 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.288 0.712 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 7.282 -15.457 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.079 3.921 4 C -0.241 4.241 5 C -0.225 4.225 6 C -0.158 4.158 7 C 0.284 3.716 8 O -0.420 6.420 9 N -0.312 5.312 10 C 0.066 3.934 11 C -0.273 4.273 12 C -0.112 4.112 13 C -0.218 4.218 14 C 0.084 3.916 15 C -0.532 4.532 16 H 0.078 0.922 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.185 1.185 22 H -0.190 1.190 23 C -0.257 4.257 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.258 0.742 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.435 6.788 -14.829 17.191 hybrid contribution -0.304 0.069 0.884 0.937 sum -5.739 6.857 -13.945 16.566 Atomic orbital electron populations 1.22807 0.81063 1.02716 1.00436 1.88050 1.20300 1.28045 1.95032 1.21361 0.91757 0.83560 0.95407 1.22523 1.02080 1.00900 0.98636 1.22351 1.02623 1.01374 0.96116 1.21899 0.95147 1.02435 0.96359 1.21524 0.81588 0.81171 0.87324 1.90747 1.52605 1.47114 1.51486 1.43499 1.08276 1.56779 1.22682 1.17550 0.95134 0.95161 0.85534 1.20498 0.99772 1.07534 0.99519 1.20850 0.98806 0.98837 0.92754 1.21349 0.98280 1.04071 0.98094 1.17854 0.92609 0.88824 0.92277 1.19726 0.95298 1.46435 0.91782 0.92218 1.26676 0.96450 0.91357 1.03270 1.69848 1.11637 1.36284 1.27571 0.85199 0.78686 0.79568 0.76235 1.18463 1.18474 1.19042 1.20968 1.02732 1.08039 0.93940 0.90185 0.94639 0.91791 0.90153 0.91714 0.94163 0.90924 0.91437 0.89137 0.85736 0.84326 0.74249 0.85090 0.86023 0.87651 0.90125 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.21 113.37 1.16 1.77 16 2 O -0.39 -11.98 8.88 -129.11 -1.15 -13.13 16 3 C 0.12 2.78 0.71 -10.79 -0.01 2.77 16 4 C -0.18 -4.81 7.97 71.98 0.57 -4.23 16 5 C -0.17 -2.43 8.06 71.98 0.58 -1.85 16 6 C -0.12 -2.60 4.97 29.85 0.15 -2.46 16 7 C 0.50 17.46 7.05 87.66 0.62 18.08 16 8 O -0.54 -25.32 10.85 16.83 0.18 -25.14 16 9 N -0.67 -23.07 5.34 -303.66 -1.62 -24.69 16 10 C 0.16 7.37 6.28 38.10 0.24 7.61 16 11 C -0.25 -10.89 9.96 22.58 0.22 -10.67 16 12 C -0.09 -4.42 10.02 22.20 0.22 -4.20 16 13 C -0.20 -11.00 8.68 22.75 0.20 -10.80 16 14 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 15 C -0.50 -30.00 9.06 23.46 0.21 -29.79 16 16 H 0.06 3.60 7.88 -2.91 -0.02 3.58 16 17 C 0.04 1.97 5.22 85.25 0.45 2.41 16 18 N -0.83 -45.19 10.81 21.82 0.24 -44.95 16 19 Si 0.98 41.18 29.58 68.60 2.03 43.21 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 23 C -0.23 -13.03 8.40 22.85 0.19 -12.84 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 0.86 6.42 -2.39 -0.02 0.85 16 26 H 0.06 1.11 6.56 -2.39 -0.02 1.09 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.52 6.54 -2.39 -0.02 1.50 16 29 H 0.04 1.45 6.01 -2.38 -0.01 1.43 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.91 6.90 -2.38 -0.02 0.90 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.42 10.28 8.82 -92.71 -0.82 9.46 16 36 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.11 6.07 6.12 -2.91 -0.02 6.05 16 39 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 40 H 0.08 4.97 6.36 -2.91 -0.02 4.96 16 Total: -1.00 -76.17 323.81 4.60 -71.57 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.23 Total: 32.27 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 4.69 Total: -39.14 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.39 Total: -69.65 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.96 Total: -38.27 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -76.17 4.60 -71.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313515891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.837 kcal (2) G-P(sol) polarization free energy of solvation -76.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds