Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47228 * 2 1 4 4 C 1.50710 * 109.47249 * 240.00300 * 2 1 3 5 5 H 1.07997 * 120.00295 * 241.34925 * 4 2 1 6 6 C 1.37878 * 119.99533 * 61.34277 * 4 2 1 7 7 N 1.31519 * 119.99641 * 193.97539 * 6 4 2 8 8 Si 1.86796 * 120.00279 * 13.98399 * 6 4 2 9 9 H 1.48494 * 109.47541 * 84.54291 * 8 6 4 10 10 H 1.48507 * 109.47046 * 204.54694 * 8 6 4 11 11 H 1.48500 * 109.47196 * 324.54201 * 8 6 4 12 12 C 1.52996 * 109.47318 * 120.00546 * 2 1 3 13 13 N 1.46501 * 109.47186 * 299.99608 * 12 2 1 14 14 C 1.34770 * 120.00464 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99900 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00243 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47022 * 180.02562 * 16 14 13 18 18 C 1.35897 * 116.99739 * 179.97438 * 17 16 14 19 19 C 1.38738 * 120.05684 * 179.97438 * 18 17 16 20 20 C 1.38140 * 119.94485 * 179.97438 * 19 18 17 21 21 C 1.38258 * 120.05911 * 0.02562 * 20 19 18 22 22 C 1.38271 * 120.11181 * 359.95560 * 21 20 19 23 23 C 1.38145 * 120.05137 * 0.04274 * 22 21 20 24 24 H 1.08995 * 109.46817 * 309.36130 * 1 2 3 25 25 H 1.08996 * 109.47149 * 69.36663 * 1 2 3 26 26 H 1.08997 * 109.47079 * 189.36313 * 1 2 3 27 27 H 1.09005 * 109.47305 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47537 * 300.00424 * 3 2 1 29 29 H 1.09003 * 109.46767 * 60.00252 * 3 2 1 30 30 H 0.96994 * 119.99816 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47400 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.47249 * 60.00016 * 12 2 1 33 33 H 0.97004 * 119.99911 * 0.02562 * 13 12 2 34 34 H 1.08993 * 109.47439 * 59.99785 * 16 14 13 35 35 H 1.09000 * 109.46713 * 299.99545 * 16 14 13 36 36 H 1.08008 * 120.02476 * 359.70094 * 19 18 17 37 37 H 1.08006 * 119.97069 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.95165 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.97427 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.02628 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6352 -1.6010 -1.1317 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5461 8 14 1.0276 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2469 1.5867 -3.9287 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5750 -1.4771 3.7806 16 6 1.3751 0.2191 4.9000 17 8 1.8525 -0.4539 6.0667 18 6 1.4876 0.0626 7.2695 19 6 1.9152 -0.5408 8.4434 20 6 1.5433 -0.0135 9.6648 21 6 0.7453 1.1143 9.7182 22 6 0.3182 1.7178 8.5498 23 6 0.6873 1.1944 7.3258 24 1 -0.3633 0.6517 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0139 0.1672 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6972 -0.6299 -4.4268 31 1 3.1301 -0.7209 1.2494 32 1 1.6768 -1.7490 1.2491 33 1 0.9938 0.7577 2.3565 34 1 0.2852 0.2183 4.9001 35 1 1.7378 1.2470 4.8999 36 1 2.5346 -1.4247 8.4022 37 1 1.8762 -0.4827 10.5789 38 1 0.4552 1.5248 10.6741 39 1 -0.3048 2.5988 8.5941 40 1 0.3531 1.6659 6.4134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315551137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = -34.119714 kcal Electronic energy + Delta-G solvation = -20901.970344 eV Core-core repulsion = 17682.872461 eV Total energy + Delta-G solvation = -3219.097883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49102 -39.29735 -37.51541 -36.62747 -33.44251 -31.64861 -31.31890 -30.39025 -28.58176 -26.45962 -25.71444 -24.79665 -22.94000 -22.32423 -20.34329 -19.27427 -18.58016 -17.13309 -16.46571 -16.39961 -16.14071 -15.79233 -15.16972 -14.90576 -14.63502 -14.54488 -13.73935 -13.59393 -13.39157 -12.99115 -12.86097 -12.66198 -12.57517 -12.26433 -12.10194 -11.85909 -11.44992 -11.21198 -11.14234 -10.50363 -10.37238 -10.22839 -10.12762 -9.64416 -9.27502 -9.17637 -8.74431 -8.67118 -8.50350 -8.44694 -6.18779 -4.16565 1.06977 1.19256 2.58929 2.75208 3.19920 3.26683 3.35177 3.53566 3.77523 4.31236 4.50318 4.62084 4.74202 4.85016 4.90103 4.90887 5.11232 5.11560 5.22665 5.37555 5.69263 5.73965 5.97566 5.99014 6.04474 6.13422 6.26525 6.28146 6.39334 6.44729 6.49442 6.55851 6.62673 6.66339 6.87904 7.14109 7.16727 7.36513 7.66685 7.75797 8.37575 8.44556 8.86617 9.44601 10.94303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042701 B = 0.003128 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.560832 B = 8949.805065 C = 9395.275447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.143 3.857 13 N -0.718 5.718 14 C 0.508 3.492 15 O -0.523 6.523 16 C 0.040 3.960 17 O -0.288 6.288 18 C 0.132 3.868 19 C -0.150 4.150 20 C -0.081 4.081 21 C -0.163 4.163 22 C -0.080 4.080 23 C -0.213 4.213 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 7.735 22.401 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.021 3.979 13 N -0.371 5.371 14 C 0.291 3.709 15 O -0.399 6.399 16 C -0.039 4.039 17 O -0.200 6.200 18 C 0.086 3.914 19 C -0.169 4.169 20 C -0.099 4.099 21 C -0.181 4.181 22 C -0.098 4.098 23 C -0.231 4.231 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.200 6.794 22.205 23.598 hybrid contribution -0.759 1.623 -0.458 1.849 sum -4.959 8.417 21.747 23.840 Atomic orbital electron populations 1.22308 0.97801 0.99902 1.00030 1.18727 0.92550 0.92277 0.93691 1.22373 1.01298 0.98273 0.98599 1.20707 1.34206 1.12402 0.87935 0.90477 1.24977 0.94655 0.97316 0.95775 1.69949 1.48012 1.35921 0.98757 0.87289 0.79331 0.85522 0.76026 1.21323 1.23362 1.17535 1.21578 0.98798 0.95895 0.81584 1.46169 1.53185 1.32123 1.05608 1.19900 0.81587 0.85198 0.84176 1.90743 1.37030 1.25660 1.86478 1.22558 1.00257 0.96906 0.84168 1.86185 1.70177 1.52320 1.11272 1.19137 0.94093 0.92597 0.85551 1.20504 1.04216 1.02388 0.89788 1.20979 0.96490 0.95542 0.96879 1.21066 1.01103 0.97625 0.98330 1.20953 0.98091 0.98969 0.91829 1.21311 1.03833 0.98525 0.99470 0.95963 0.92430 0.93313 0.92694 0.93951 0.95214 0.92496 0.91712 0.91604 0.76795 0.89113 0.89147 0.84956 0.85347 0.85985 0.85791 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.89 7.52 37.16 0.28 -2.61 16 4 C -0.51 -13.58 8.62 -34.44 -0.30 -13.88 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 8 Si 0.89 20.65 22.79 -169.99 -3.87 16.78 16 9 H -0.29 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.25 -5.23 4.65 56.52 0.26 -4.96 16 12 C 0.14 2.78 4.49 -4.04 -0.02 2.76 16 13 N -0.72 -11.09 5.00 -60.30 -0.30 -11.39 16 14 C 0.51 8.12 7.91 -10.99 -0.09 8.03 16 15 O -0.52 -10.84 16.50 -14.35 -0.24 -11.08 16 16 C 0.04 0.47 5.22 36.01 0.19 0.66 16 17 O -0.29 -4.06 9.67 -39.33 -0.38 -4.44 16 18 C 0.13 1.57 6.69 -39.22 -0.26 1.31 16 19 C -0.15 -1.62 9.99 -39.43 -0.39 -2.01 16 20 C -0.08 -0.70 10.04 -39.61 -0.40 -1.09 16 21 C -0.16 -1.31 10.04 -39.56 -0.40 -1.71 16 22 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 23 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 24 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 25 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 26 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 29 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.40 5.04 6.26 -40.82 -0.26 4.78 16 34 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 35 H 0.09 0.82 7.66 -51.93 -0.40 0.42 16 36 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.00 6.30 -52.48 -0.33 0.67 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -32.35 319.22 -6.76 -39.11 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.52 Total: 3.81 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.03 Total: -12.05 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.47 Total: -36.94 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.62 Total: -15.52 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.87 Total: 16.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.35 -6.76 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315551137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.995 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds