Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47228 * 2 1 4 4 C 1.50710 * 109.47249 * 240.00300 * 2 1 3 5 5 H 1.07997 * 120.00295 * 241.34925 * 4 2 1 6 6 C 1.37878 * 119.99533 * 61.34277 * 4 2 1 7 7 N 1.31519 * 119.99641 * 193.97539 * 6 4 2 8 8 Si 1.86796 * 120.00279 * 13.98399 * 6 4 2 9 9 H 1.48494 * 109.47541 * 84.54291 * 8 6 4 10 10 H 1.48507 * 109.47046 * 204.54694 * 8 6 4 11 11 H 1.48500 * 109.47196 * 324.54201 * 8 6 4 12 12 C 1.52996 * 109.47318 * 120.00546 * 2 1 3 13 13 N 1.46501 * 109.47186 * 299.99608 * 12 2 1 14 14 C 1.34770 * 120.00464 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99900 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00243 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47022 * 180.02562 * 16 14 13 18 18 C 1.35897 * 116.99739 * 179.97438 * 17 16 14 19 19 C 1.38738 * 120.05684 * 179.97438 * 18 17 16 20 20 C 1.38140 * 119.94485 * 179.97438 * 19 18 17 21 21 C 1.38258 * 120.05911 * 0.02562 * 20 19 18 22 22 C 1.38271 * 120.11181 * 359.95560 * 21 20 19 23 23 C 1.38145 * 120.05137 * 0.04274 * 22 21 20 24 24 H 1.08995 * 109.46817 * 309.36130 * 1 2 3 25 25 H 1.08996 * 109.47149 * 69.36663 * 1 2 3 26 26 H 1.08997 * 109.47079 * 189.36313 * 1 2 3 27 27 H 1.09005 * 109.47305 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47537 * 300.00424 * 3 2 1 29 29 H 1.09003 * 109.46767 * 60.00252 * 3 2 1 30 30 H 0.96994 * 119.99816 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47400 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.47249 * 60.00016 * 12 2 1 33 33 H 0.97004 * 119.99911 * 0.02562 * 13 12 2 34 34 H 1.08993 * 109.47439 * 59.99785 * 16 14 13 35 35 H 1.09000 * 109.46713 * 299.99545 * 16 14 13 36 36 H 1.08008 * 120.02476 * 359.70094 * 19 18 17 37 37 H 1.08006 * 119.97069 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.95165 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.97427 * 180.02562 * 22 21 20 40 40 H 1.08007 * 120.02628 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6352 -1.6010 -1.1317 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5461 8 14 1.0276 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2469 1.5867 -3.9287 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5750 -1.4771 3.7806 16 6 1.3751 0.2191 4.9000 17 8 1.8525 -0.4539 6.0667 18 6 1.4876 0.0626 7.2695 19 6 1.9152 -0.5408 8.4434 20 6 1.5433 -0.0135 9.6648 21 6 0.7453 1.1143 9.7182 22 6 0.3182 1.7178 8.5498 23 6 0.6873 1.1944 7.3258 24 1 -0.3633 0.6517 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0139 0.1672 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6972 -0.6299 -4.4268 31 1 3.1301 -0.7209 1.2494 32 1 1.6768 -1.7490 1.2491 33 1 0.9938 0.7577 2.3565 34 1 0.2852 0.2183 4.9001 35 1 1.7378 1.2470 4.8999 36 1 2.5346 -1.4247 8.4022 37 1 1.8762 -0.4827 10.5789 38 1 0.4552 1.5248 10.6741 39 1 -0.3048 2.5988 8.5941 40 1 0.3531 1.6659 6.4134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315551137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = -56.344576 kcal Electronic energy + Delta-G solvation = -20902.934086 eV Core-core repulsion = 17682.872461 eV Total energy + Delta-G solvation = -3220.061626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42681 -40.47115 -38.60471 -37.97334 -35.07140 -33.51891 -32.02375 -31.15786 -29.60351 -28.00926 -27.29537 -26.61819 -23.66426 -23.09340 -21.61294 -20.97104 -19.38243 -18.44999 -18.00236 -17.43248 -17.27778 -16.94892 -16.57311 -16.13196 -15.95536 -15.28119 -14.94817 -14.92723 -14.67148 -14.36082 -14.28806 -14.01292 -13.74556 -13.63446 -13.53095 -12.94039 -12.45341 -12.39897 -12.18128 -12.06972 -11.94903 -11.80778 -11.76348 -11.11722 -10.92216 -10.62200 -10.38853 -10.09570 -9.92550 -9.17916 -8.30323 -6.32685 0.42096 0.50332 1.36932 1.38854 1.51363 1.52331 1.58585 2.35225 2.71928 2.87293 3.05967 3.60368 3.91923 4.02549 4.06492 4.08325 4.10909 4.31857 4.32517 4.41243 4.50201 4.56362 4.73036 4.76446 4.82451 4.86339 4.93989 5.06681 5.11800 5.15861 5.37000 5.38883 5.50401 5.51815 5.63182 5.71237 5.80214 5.86295 6.29112 6.37590 6.57324 6.72408 7.20510 7.32350 8.87096 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042701 B = 0.003128 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.560832 B = 8949.805065 C = 9395.275447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.521 4.521 5 H 0.025 0.975 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.317 1.317 11 H -0.198 1.198 12 C 0.158 3.842 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.581 6.581 16 C 0.047 3.953 17 O -0.324 6.324 18 C 0.104 3.896 19 C -0.175 4.175 20 C -0.084 4.084 21 C -0.163 4.163 22 C -0.083 4.083 23 C -0.215 4.215 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.417 0.583 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 11.673 25.333 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.559 4.559 5 H 0.043 0.957 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.247 1.247 11 H -0.122 1.122 12 C 0.034 3.966 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.460 6.460 16 C -0.030 4.030 17 O -0.237 6.237 18 C 0.059 3.941 19 C -0.194 4.194 20 C -0.102 4.102 21 C -0.181 4.181 22 C -0.101 4.101 23 C -0.234 4.234 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.255 0.745 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.665 10.772 25.189 28.195 hybrid contribution 0.067 0.270 -1.262 1.293 sum -6.597 11.042 23.927 27.165 Atomic orbital electron populations 1.22237 0.95803 1.00776 1.01174 1.18655 0.93976 0.93202 0.91453 1.22313 1.01028 0.96617 1.00591 1.21053 1.33001 1.11106 0.90726 0.95688 1.25918 0.95392 1.01856 0.95139 1.70124 1.50708 1.38441 0.99466 0.86306 0.79443 0.79558 0.77106 1.20902 1.24659 1.12190 1.21071 0.97452 0.95064 0.83040 1.45833 1.53107 1.32305 1.04333 1.20742 0.80249 0.84415 0.85356 1.90726 1.39599 1.28380 1.87306 1.22610 1.01941 0.97153 0.81342 1.86120 1.71342 1.53787 1.12477 1.19386 0.95847 0.94090 0.84757 1.20699 1.05103 1.02795 0.90824 1.21275 0.96277 0.95845 0.96790 1.21472 0.99999 0.96947 0.99667 1.21364 0.97817 0.99595 0.91340 1.21585 1.03072 0.97649 1.01074 0.90962 0.93572 0.94139 0.93559 0.94605 0.90205 0.92675 0.93900 0.94103 0.74467 0.85714 0.85676 0.85974 0.83276 0.83379 0.82996 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 7.53 71.98 0.54 -4.56 16 2 C 0.03 1.16 0.50 -52.93 -0.03 1.13 16 3 C -0.15 -5.24 7.52 71.98 0.54 -4.70 16 4 C -0.52 -28.48 8.62 25.60 0.22 -28.26 16 5 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 6 C 0.01 0.80 5.32 84.65 0.45 1.25 16 7 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 8 Si 0.95 41.72 22.79 68.60 1.56 43.29 16 9 H -0.28 -12.18 7.10 99.48 0.71 -11.47 16 10 H -0.32 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.20 -7.16 4.65 99.48 0.46 -6.70 16 12 C 0.16 6.12 4.49 86.38 0.39 6.51 16 13 N -0.70 -19.83 5.00 -463.07 -2.32 -22.15 16 14 C 0.51 15.42 7.91 87.66 0.69 16.11 16 15 O -0.58 -24.59 16.50 16.01 0.26 -24.32 16 16 C 0.05 0.96 5.22 71.24 0.37 1.33 16 17 O -0.32 -8.84 9.67 -73.35 -0.71 -9.55 16 18 C 0.10 2.32 6.69 22.51 0.15 2.47 16 19 C -0.18 -3.70 9.99 22.37 0.22 -3.47 16 20 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 21 C -0.16 -2.07 10.04 22.28 0.22 -1.84 16 22 C -0.08 -1.06 10.04 22.26 0.22 -0.84 16 23 C -0.22 -3.43 9.04 22.37 0.20 -3.23 16 24 H 0.07 1.87 7.13 -2.39 -0.02 1.85 16 25 H 0.05 1.76 4.30 -2.39 -0.01 1.75 16 26 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.04 1.32 2.25 -2.39 -0.01 1.32 16 29 H 0.08 2.02 6.86 -2.39 -0.02 2.00 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.42 8.37 6.26 -92.71 -0.58 7.78 16 34 H 0.13 1.68 7.66 -2.39 -0.02 1.66 16 35 H 0.13 1.67 7.66 -2.39 -0.02 1.65 16 36 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.15 1.58 6.30 -2.91 -0.02 1.56 16 Total: -1.00 -77.44 319.22 3.75 -73.68 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.23 Total: 16.68 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.43 Total: -19.17 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.02 Total: -80.61 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.45 Total: -33.87 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.56 Total: 43.29 kcal Total: -77.44 3.75 -73.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315551137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds