Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35909 * 117.00177 * 2 1 4 4 C 1.38860 * 119.98257 * 359.72590 * 3 2 1 5 5 C 1.38239 * 120.23573 * 179.72106 * 4 3 2 6 6 C 1.38013 * 120.20435 * 0.55377 * 5 4 3 7 7 C 1.39557 * 119.96971 * 359.72421 * 6 5 4 8 8 C 1.47857 * 120.12217 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00355 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99551 * 359.97140 * 8 7 6 11 11 C 1.46505 * 119.99640 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46874 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47341 * 300.00022 * 12 11 10 14 14 C 1.52997 * 109.46981 * 60.00006 * 12 11 10 15 15 C 1.50700 * 109.46954 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00060 * 1.34639 * 15 12 11 17 17 C 1.37871 * 119.99757 * 181.34813 * 15 12 11 18 18 N 1.31527 * 119.99879 * 193.97156 * 17 15 12 19 19 Si 1.86796 * 120.00375 * 13.97598 * 17 15 12 20 20 H 1.48498 * 109.47319 * 84.54926 * 19 17 15 21 21 H 1.48505 * 109.47329 * 204.55010 * 19 17 15 22 22 H 1.48499 * 109.47212 * 324.54936 * 19 17 15 23 23 C 1.38448 * 119.98414 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.46759 * 59.99974 * 1 2 3 25 25 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47012 * 299.99919 * 1 2 3 27 27 H 1.07999 * 119.88190 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.89888 * 180.24995 * 5 4 3 29 29 H 1.08004 * 120.01350 * 179.74314 * 6 5 4 30 30 H 0.96998 * 120.00808 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.46989 * 299.99469 * 11 10 8 32 32 H 1.08996 * 109.47698 * 60.00209 * 11 10 8 33 33 H 1.08999 * 109.47369 * 69.36434 * 13 12 11 34 34 H 1.08994 * 109.47625 * 189.37158 * 13 12 11 35 35 H 1.09003 * 109.46859 * 309.37231 * 13 12 11 36 36 H 1.09001 * 109.47831 * 60.00114 * 14 12 11 37 37 H 1.09004 * 109.47098 * 179.97438 * 14 12 11 38 38 H 1.08996 * 109.47349 * 299.99633 * 14 12 11 39 39 H 0.97000 * 119.99571 * 179.97438 * 18 17 15 40 40 H 1.07993 * 120.10676 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3753 -0.0058 5 6 1.9117 3.6098 0.0000 6 6 3.2893 3.6930 0.0000 7 6 4.0581 2.5283 0.0000 8 6 5.5342 2.6135 0.0006 9 8 6.2017 1.5977 0.0010 10 7 6.1396 3.8177 0.0006 11 6 7.6022 3.9022 0.0006 12 6 8.0281 5.3718 0.0012 13 6 7.4774 6.0629 -1.2477 14 6 7.4774 6.0618 1.2507 15 6 9.5326 5.4587 0.0018 16 1 10.1257 4.5564 -0.0202 17 6 10.1519 6.6902 0.0305 18 7 11.4346 6.7877 -0.2434 19 14 9.1694 8.2201 0.4587 20 1 9.1016 8.3679 1.9347 21 1 9.8303 9.4133 -0.1285 22 1 7.7950 8.0954 -0.0899 23 6 3.4287 1.2830 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2112 2.3163 -0.0098 28 1 1.3179 4.5119 -0.0004 29 1 3.7722 4.6591 0.0004 30 1 5.6070 4.6284 0.0005 31 1 7.9945 3.4102 0.8906 32 1 7.9946 3.4102 -0.8893 33 1 6.3936 6.1476 -1.1680 34 1 7.9141 7.0577 -1.3350 35 1 7.7319 5.4757 -2.1300 36 1 7.8697 5.5695 2.1406 37 1 7.7812 7.1087 1.2514 38 1 6.3892 5.9990 1.2507 39 1 11.8702 7.6542 -0.2236 40 1 4.0183 0.3782 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315565110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = -34.298866 kcal Electronic energy + Delta-G solvation = -21239.998850 eV Core-core repulsion = 18020.893198 eV Total energy + Delta-G solvation = -3219.105652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52539 -39.34517 -37.34988 -36.61164 -33.43184 -31.67004 -31.31215 -30.33854 -27.60028 -26.44310 -26.16925 -24.98463 -23.23132 -22.59252 -20.30492 -19.32878 -18.48855 -16.69647 -16.34663 -16.16472 -16.03968 -16.03088 -15.32099 -14.97593 -14.87664 -14.00479 -13.73072 -13.59647 -13.36002 -12.94809 -12.72541 -12.64544 -12.44780 -12.23169 -12.07149 -12.03129 -11.44089 -11.26435 -11.18456 -10.45561 -10.34092 -10.18898 -10.08441 -9.68499 -9.21822 -9.14013 -8.70452 -8.58542 -8.48664 -8.44046 -6.15640 -4.13085 0.71451 1.20243 2.90876 2.95729 3.22914 3.29784 3.37738 3.61032 3.82275 4.34446 4.50026 4.60208 4.76790 4.80891 4.90432 4.96721 5.13395 5.14902 5.21950 5.33266 5.72673 5.74967 5.99698 6.02526 6.04222 6.13309 6.18847 6.32539 6.37103 6.48201 6.50491 6.61373 6.67639 6.74493 6.93773 7.10944 7.19537 7.41067 7.70528 7.87265 8.42767 8.52645 8.89904 9.48044 10.97454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040013 B = 0.003634 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.612781 B = 7702.257334 C = 8190.661896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.117 3.883 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.086 4.086 8 C 0.548 3.452 9 O -0.539 6.539 10 N -0.714 5.714 11 C 0.141 3.859 12 C 0.028 3.972 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.513 4.513 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.249 1.249 23 C -0.094 4.094 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.396 0.604 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.265 0.735 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.716 -5.983 0.511 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.072 3.928 4 C -0.209 4.209 5 C -0.105 4.105 6 C -0.144 4.144 7 C -0.090 4.090 8 C 0.334 3.666 9 O -0.418 6.418 10 N -0.365 5.365 11 C 0.019 3.981 12 C 0.027 3.973 13 C -0.200 4.200 14 C -0.205 4.205 15 C -0.551 4.551 16 H 0.095 0.905 17 C -0.127 4.127 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.234 1.234 22 H -0.175 1.175 23 C -0.114 4.114 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.936 -6.777 0.486 23.921 hybrid contribution -0.933 1.552 0.319 1.839 sum -23.869 -5.225 0.805 24.448 Atomic orbital electron populations 1.23068 0.78377 1.04038 1.01309 1.86106 1.21338 1.26629 1.88821 1.18869 0.92036 0.84368 0.97505 1.21387 1.00141 0.92365 1.07013 1.20869 0.94287 0.97177 0.98178 1.21285 0.94028 0.97786 1.01274 1.19889 0.93651 0.93291 1.02125 1.18162 0.86819 0.84151 0.77460 1.90767 1.65929 1.34993 1.50115 1.46244 1.09597 1.07325 1.73324 1.21580 0.75982 0.98754 1.01818 1.18728 0.97211 0.89865 0.91494 1.22306 0.96895 1.01472 0.99351 1.22371 0.97601 1.00173 1.00386 1.20712 0.87769 0.94519 1.52115 0.90473 1.24975 0.94777 0.98779 0.94203 1.69957 1.10636 1.25118 1.47025 0.87293 0.80435 0.82183 0.78280 1.21335 1.23394 1.17512 1.20489 0.91203 0.98464 1.01236 0.92617 0.88164 0.92627 0.85207 0.85132 0.85294 0.76758 0.91695 0.91582 0.96008 0.92440 0.93298 0.92681 0.93973 0.95243 0.92540 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.39 10.49 -19.46 -0.20 -3.59 16 3 C 0.12 1.36 6.68 -39.27 -0.26 1.10 16 4 C -0.19 -1.79 9.03 -39.35 -0.36 -2.14 16 5 C -0.09 -0.81 10.03 -39.66 -0.40 -1.21 16 6 C -0.12 -1.41 9.54 -39.17 -0.37 -1.78 16 7 C -0.09 -1.22 5.87 -104.99 -0.62 -1.83 16 8 C 0.55 9.48 7.77 -12.32 -0.10 9.39 16 9 O -0.54 -11.24 16.35 5.32 0.09 -11.15 16 10 N -0.71 -11.98 4.95 -61.24 -0.30 -12.28 16 11 C 0.14 2.83 4.49 -4.03 -0.02 2.81 16 12 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 13 C -0.14 -2.88 7.53 37.15 0.28 -2.60 16 14 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 15 C -0.51 -13.73 8.62 -34.44 -0.30 -14.03 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 19 Si 0.89 20.92 22.79 -169.99 -3.87 17.04 16 20 H -0.29 -6.73 7.10 56.52 0.40 -6.33 16 21 H -0.31 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.25 -5.31 4.65 56.52 0.26 -5.05 16 23 C -0.09 -1.30 9.53 -39.02 -0.37 -1.67 16 24 H 0.06 0.28 7.64 -51.93 -0.40 -0.12 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 27 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 28 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.13 1.26 6.40 -52.48 -0.34 0.93 16 30 H 0.40 5.72 4.29 -40.82 -0.18 5.54 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 34 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 35 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 38 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.14 2.09 7.65 -52.49 -0.40 1.69 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -31.97 315.16 -5.51 -37.48 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.33 Total: 4.53 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.41 Total: -10.98 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.47 Total: -38.08 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.12 Total: -14.74 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -3.87 Total: 17.04 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.97 -5.51 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315565110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.184 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds