Wall clock time and date at job start Mon Mar 30 2020 01:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35909 * 117.00177 * 2 1 4 4 C 1.38860 * 119.98257 * 359.72590 * 3 2 1 5 5 C 1.38239 * 120.23573 * 179.72106 * 4 3 2 6 6 C 1.38013 * 120.20435 * 0.55377 * 5 4 3 7 7 C 1.39557 * 119.96971 * 359.72421 * 6 5 4 8 8 C 1.47857 * 120.12217 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00355 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99551 * 359.97140 * 8 7 6 11 11 C 1.46505 * 119.99640 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46874 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47341 * 300.00022 * 12 11 10 14 14 C 1.52997 * 109.46981 * 60.00006 * 12 11 10 15 15 C 1.50700 * 109.46954 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00060 * 1.34639 * 15 12 11 17 17 C 1.37871 * 119.99757 * 181.34813 * 15 12 11 18 18 N 1.31527 * 119.99879 * 193.97156 * 17 15 12 19 19 Si 1.86796 * 120.00375 * 13.97598 * 17 15 12 20 20 H 1.48498 * 109.47319 * 84.54926 * 19 17 15 21 21 H 1.48505 * 109.47329 * 204.55010 * 19 17 15 22 22 H 1.48499 * 109.47212 * 324.54936 * 19 17 15 23 23 C 1.38448 * 119.98414 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.46759 * 59.99974 * 1 2 3 25 25 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47012 * 299.99919 * 1 2 3 27 27 H 1.07999 * 119.88190 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.89888 * 180.24995 * 5 4 3 29 29 H 1.08004 * 120.01350 * 179.74314 * 6 5 4 30 30 H 0.96998 * 120.00808 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.46989 * 299.99469 * 11 10 8 32 32 H 1.08996 * 109.47698 * 60.00209 * 11 10 8 33 33 H 1.08999 * 109.47369 * 69.36434 * 13 12 11 34 34 H 1.08994 * 109.47625 * 189.37158 * 13 12 11 35 35 H 1.09003 * 109.46859 * 309.37231 * 13 12 11 36 36 H 1.09001 * 109.47831 * 60.00114 * 14 12 11 37 37 H 1.09004 * 109.47098 * 179.97438 * 14 12 11 38 38 H 1.08996 * 109.47349 * 299.99633 * 14 12 11 39 39 H 0.97000 * 119.99571 * 179.97438 * 18 17 15 40 40 H 1.07993 * 120.10676 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3753 -0.0058 5 6 1.9117 3.6098 0.0000 6 6 3.2893 3.6930 0.0000 7 6 4.0581 2.5283 0.0000 8 6 5.5342 2.6135 0.0006 9 8 6.2017 1.5977 0.0010 10 7 6.1396 3.8177 0.0006 11 6 7.6022 3.9022 0.0006 12 6 8.0281 5.3718 0.0012 13 6 7.4774 6.0629 -1.2477 14 6 7.4774 6.0618 1.2507 15 6 9.5326 5.4587 0.0018 16 1 10.1257 4.5564 -0.0202 17 6 10.1519 6.6902 0.0305 18 7 11.4346 6.7877 -0.2434 19 14 9.1694 8.2201 0.4587 20 1 9.1016 8.3679 1.9347 21 1 9.8303 9.4133 -0.1285 22 1 7.7950 8.0954 -0.0899 23 6 3.4287 1.2830 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2112 2.3163 -0.0098 28 1 1.3179 4.5119 -0.0004 29 1 3.7722 4.6591 0.0004 30 1 5.6070 4.6284 0.0005 31 1 7.9945 3.4102 0.8906 32 1 7.9946 3.4102 -0.8893 33 1 6.3936 6.1476 -1.1680 34 1 7.9141 7.0577 -1.3350 35 1 7.7319 5.4757 -2.1300 36 1 7.8697 5.5695 2.1406 37 1 7.7812 7.1087 1.2514 38 1 6.3892 5.9990 1.2507 39 1 11.8702 7.6542 -0.2236 40 1 4.0183 0.3782 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315565110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:41 Heat of formation + Delta-G solvation = -57.360462 kcal Electronic energy + Delta-G solvation = -21240.998876 eV Core-core repulsion = 18020.893198 eV Total energy + Delta-G solvation = -3220.105678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51020 -40.50712 -38.57709 -37.94107 -35.10080 -33.53375 -32.23599 -31.25521 -28.16199 -28.03533 -27.68863 -26.96875 -24.38819 -23.41759 -21.51028 -20.99717 -19.62157 -18.12551 -17.69011 -17.23182 -17.14941 -16.84481 -16.70443 -16.35326 -16.33031 -15.16709 -14.98606 -14.75754 -14.71595 -14.45926 -14.34914 -13.99475 -13.74674 -13.54942 -13.15937 -12.95201 -12.77354 -12.38931 -12.17684 -12.02480 -11.94886 -11.93565 -11.76790 -11.16727 -10.99333 -10.61605 -10.38873 -10.22930 -9.94259 -9.28791 -8.29594 -6.31919 -0.22655 0.38435 1.37643 1.39395 1.52686 1.81991 2.02553 2.35941 2.48487 2.82679 3.06437 3.65167 3.80233 4.03428 4.06938 4.16238 4.25725 4.31088 4.40736 4.43787 4.46044 4.51697 4.75143 4.76754 4.81708 4.85890 4.89484 4.93688 5.05638 5.14738 5.21069 5.29469 5.35068 5.39152 5.50775 5.63938 5.71880 5.79686 6.29909 6.40007 6.55654 6.72682 7.18560 7.33029 8.87758 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040013 B = 0.003634 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.612781 B = 7702.257334 C = 8190.661896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.077 4.077 6 C -0.122 4.122 7 C -0.106 4.106 8 C 0.547 3.453 9 O -0.588 6.588 10 N -0.700 5.700 11 C 0.155 3.845 12 C 0.028 3.972 13 C -0.142 4.142 14 C -0.149 4.149 15 C -0.520 4.520 16 H 0.026 0.974 17 C 0.015 3.985 18 N -0.948 5.948 19 Si 0.946 3.054 20 H -0.281 1.281 21 H -0.315 1.315 22 H -0.200 1.200 23 C -0.122 4.122 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.150 0.850 30 H 0.412 0.588 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.265 0.735 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.139 -3.749 0.791 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.254 6.254 3 C 0.066 3.934 4 C -0.194 4.194 5 C -0.094 4.094 6 C -0.141 4.141 7 C -0.110 4.110 8 C 0.336 3.664 9 O -0.470 6.470 10 N -0.352 5.352 11 C 0.031 3.969 12 C 0.027 3.973 13 C -0.200 4.200 14 C -0.205 4.205 15 C -0.558 4.558 16 H 0.044 0.956 17 C -0.182 4.182 18 N -0.587 5.587 19 Si 0.775 3.225 20 H -0.208 1.208 21 H -0.245 1.245 22 H -0.123 1.123 23 C -0.141 4.141 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.089 0.911 27 H 0.183 0.817 28 H 0.190 0.810 29 H 0.167 0.833 30 H 0.252 0.748 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -28.423 -4.546 0.766 28.795 hybrid contribution 0.704 0.665 0.213 0.992 sum -27.719 -3.881 0.979 28.007 Atomic orbital electron populations 1.23414 0.75889 1.05734 1.02741 1.86085 1.23953 1.26643 1.88727 1.18923 0.91338 0.85701 0.97443 1.21824 1.01815 0.91391 1.04381 1.21341 0.93575 0.98597 0.95904 1.21539 0.95000 0.97204 1.00354 1.19583 0.91276 0.94763 1.05332 1.18750 0.88426 0.83304 0.75937 1.90740 1.67412 1.36597 1.52211 1.45929 1.07883 1.08114 1.73293 1.21122 0.78238 0.97674 0.99838 1.18654 0.93801 0.91040 0.93788 1.22237 0.99731 1.00261 0.97746 1.22313 1.00514 0.99144 0.98567 1.21028 0.90847 0.92759 1.51186 0.95581 1.25903 0.95736 1.02620 0.93952 1.70126 1.13125 1.26016 1.49413 0.86312 0.81197 0.76782 0.78217 1.20828 1.24497 1.12322 1.20412 0.92613 0.97666 1.03455 0.91069 0.86649 0.91076 0.81679 0.81049 0.83256 0.74844 0.93745 0.93941 0.91308 0.93346 0.94115 0.93494 0.94406 0.90587 0.92650 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.81 10.49 -92.53 -0.97 -7.78 16 3 C 0.11 2.38 6.68 22.47 0.15 2.53 16 4 C -0.18 -2.49 9.03 22.42 0.20 -2.28 16 5 C -0.08 -1.00 10.03 22.22 0.22 -0.78 16 6 C -0.12 -2.26 9.54 22.53 0.21 -2.04 16 7 C -0.11 -2.88 5.87 -20.10 -0.12 -3.00 16 8 C 0.55 19.04 7.77 86.79 0.67 19.72 16 9 O -0.59 -25.87 16.35 -3.88 -0.06 -25.94 16 10 N -0.70 -22.50 4.95 -465.94 -2.31 -24.81 16 11 C 0.16 6.35 4.49 86.38 0.39 6.74 16 12 C 0.03 1.20 0.50 -52.93 -0.03 1.17 16 13 C -0.14 -5.32 7.53 71.98 0.54 -4.77 16 14 C -0.15 -5.47 7.52 71.98 0.54 -4.93 16 15 C -0.52 -28.88 8.62 25.60 0.22 -28.66 16 16 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 17 C 0.02 0.86 5.32 84.65 0.45 1.31 16 18 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 19 Si 0.95 42.18 22.79 68.60 1.56 43.75 16 20 H -0.28 -12.28 7.10 99.48 0.71 -11.57 16 21 H -0.32 -14.54 7.11 99.48 0.71 -13.84 16 22 H -0.20 -7.36 4.65 99.48 0.46 -6.89 16 23 C -0.12 -3.37 9.53 22.63 0.22 -3.15 16 24 H 0.07 0.43 7.64 -2.39 -0.02 0.41 16 25 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 27 H 0.17 1.15 6.28 -2.91 -0.02 1.13 16 28 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.15 2.06 6.40 -2.91 -0.02 2.05 16 30 H 0.41 10.23 4.29 -92.71 -0.40 9.83 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16 34 H 0.05 1.90 4.30 -2.39 -0.01 1.88 16 35 H 0.04 1.56 8.12 -2.39 -0.02 1.54 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.44 2.25 -2.38 -0.01 1.43 16 38 H 0.08 2.09 6.86 -2.39 -0.02 2.07 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.12 3.73 7.65 -2.91 -0.02 3.71 16 Total: -1.00 -76.54 315.16 3.73 -72.81 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.42 Total: 17.62 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.79 Total: -16.89 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.01 Total: -83.58 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.03 Total: -33.71 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.56 Total: 43.75 kcal Total: -76.54 3.73 -72.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315565110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.452 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds