Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46824 * 2 1 4 4 C 1.50699 * 109.46898 * 239.99834 * 2 1 3 5 5 H 1.07997 * 120.00085 * 239.99795 * 4 2 1 6 6 C 1.37877 * 119.99851 * 60.00386 * 4 2 1 7 7 N 1.31515 * 120.00325 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00049 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47240 * 59.99776 * 8 6 4 10 10 H 1.48503 * 109.47470 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47295 * 299.99756 * 8 6 4 12 12 C 1.52999 * 109.47092 * 120.00049 * 2 1 3 13 13 N 1.46501 * 109.47132 * 300.00084 * 12 2 1 14 14 C 1.34777 * 120.00217 * 180.02562 * 13 12 2 15 15 O 1.21277 * 119.99809 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00333 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.47149 * 179.97438 * 16 14 13 18 18 C 1.38158 * 120.02768 * 264.99832 * 17 16 14 19 19 C 1.38250 * 120.05410 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11168 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05855 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.02445 * 84.95894 * 17 16 14 23 23 O 1.35901 * 120.05828 * 0.03985 * 22 17 16 24 24 H 1.08999 * 109.46990 * 299.99998 * 1 2 3 25 25 H 1.08997 * 109.47137 * 59.99876 * 1 2 3 26 26 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47365 * 299.99984 * 3 2 1 29 29 H 1.08999 * 109.47336 * 60.00213 * 3 2 1 30 30 H 0.96996 * 120.00554 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.46998 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.47267 * 59.99859 * 12 2 1 33 33 H 0.97005 * 119.99920 * 0.02562 * 13 12 2 34 34 H 1.08999 * 109.46777 * 59.99444 * 16 14 13 35 35 H 1.08996 * 109.46853 * 299.99672 * 16 14 13 36 36 H 1.08004 * 119.97750 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.94133 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.97275 * 180.02562 * 20 19 18 39 39 H 1.07994 * 120.03307 * 179.73079 * 21 20 19 40 40 H 0.96701 * 113.99785 * 269.95941 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0082 10 1 1.8268 -0.4199 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5749 -1.4768 3.7808 16 6 1.3758 0.2199 4.9000 17 6 1.8780 -0.4906 6.1305 18 6 1.0861 -1.4346 6.7554 19 6 1.5461 -2.0864 7.8845 20 6 2.7996 -1.7958 8.3910 21 6 3.5956 -0.8536 7.7693 22 6 3.1361 -0.1979 6.6360 23 8 3.9170 0.7303 6.0231 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2493 33 1 0.9937 0.7578 2.3564 34 1 0.2858 0.2200 4.9003 35 1 1.7392 1.2475 4.8997 36 1 0.1065 -1.6630 6.3620 37 1 0.9254 -2.8237 8.3718 38 1 3.1568 -2.3066 9.2729 39 1 4.5727 -0.6239 8.1677 40 1 4.4946 0.3675 5.3377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315624380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = -67.985094 kcal Electronic energy + Delta-G solvation = -21332.245330 eV Core-core repulsion = 18111.678934 eV Total energy + Delta-G solvation = -3220.566397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20359 -38.85112 -36.62140 -36.36109 -33.28992 -32.77064 -30.87552 -29.95536 -27.73248 -25.74533 -25.51944 -24.64626 -22.65208 -21.82602 -20.03239 -18.81496 -18.30502 -16.88053 -16.27628 -16.01962 -15.77190 -15.33626 -14.82869 -14.70172 -14.51384 -13.98610 -13.32913 -13.19688 -13.03423 -12.86297 -12.24827 -12.18590 -12.06388 -12.01245 -11.45496 -11.31456 -11.20397 -10.85689 -10.74673 -10.47423 -10.40191 -10.22243 -9.65313 -9.62364 -9.31623 -8.88754 -8.80779 -8.57023 -8.47012 -8.32751 -6.03619 -4.13976 1.19969 1.27558 3.03382 3.28906 3.33346 3.36499 3.48264 3.87027 4.29407 4.39306 4.64219 4.77844 4.94425 5.17153 5.23030 5.27230 5.38793 5.46197 5.59102 5.81805 5.93252 6.21544 6.27605 6.30501 6.38882 6.46454 6.48988 6.74951 6.75889 6.80693 6.91706 6.99802 7.01539 7.33529 7.53871 7.63253 7.67635 7.99202 8.03604 8.13894 8.36788 8.68299 8.86664 9.51953 10.97735 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037161 B = 0.003437 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.303751 B = 8145.834246 C = 8152.171810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.716 5.716 14 C 0.507 3.493 15 O -0.551 6.551 16 C -0.105 4.105 17 C -0.082 4.082 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.147 4.147 22 C 0.121 3.879 23 O -0.500 6.500 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -0.290 17.533 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.367 5.367 14 C 0.292 3.708 15 O -0.430 6.430 16 C -0.145 4.145 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.148 4.148 20 C -0.127 4.127 21 C -0.165 4.165 22 C 0.076 3.924 23 O -0.311 6.311 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.198 -0.486 17.799 17.807 hybrid contribution 0.310 -0.411 -1.289 1.388 sum 0.508 -0.897 16.511 16.543 Atomic orbital electron populations 1.21832 0.97770 0.99147 1.00100 1.18350 0.92793 0.92766 0.90556 1.21827 0.98559 0.98329 1.00112 1.20950 1.31586 1.12133 0.89936 0.92525 1.24877 0.94834 0.94915 0.98846 1.69788 1.36586 1.22731 1.23363 0.86631 0.79247 0.79795 0.82174 1.20280 1.21314 1.20270 1.21706 0.98061 0.95764 0.83485 1.46330 1.52594 1.31798 1.05972 1.20407 0.80964 0.84778 0.84617 1.90674 1.38703 1.26591 1.86994 1.20626 1.02452 1.00783 0.90620 1.19662 0.94993 0.97609 0.96062 1.20933 0.99746 0.95105 0.95378 1.21092 0.96420 1.00395 0.96905 1.20980 0.94327 0.97549 0.99848 1.21360 1.00739 0.97243 0.97187 1.18248 0.90323 0.90503 0.93329 1.84707 1.56714 1.33982 1.55705 0.97486 0.89584 0.95482 0.95472 0.89602 0.97456 0.92925 0.92809 0.92811 0.76664 0.88206 0.87586 0.85744 0.85901 0.85872 0.85612 0.74904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.47 9.35 55.43 0.52 -22.96 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.72 -12.33 4.96 -60.30 -0.30 -12.63 16 14 C 0.51 8.43 7.82 -10.98 -0.09 8.34 16 15 O -0.55 -11.10 16.03 5.56 0.09 -11.01 16 16 C -0.10 -1.33 5.55 -29.03 -0.16 -1.50 16 17 C -0.08 -1.10 4.39 -104.48 -0.46 -1.56 16 18 C -0.09 -1.13 9.68 -39.61 -0.38 -1.51 16 19 C -0.13 -1.39 10.04 -39.56 -0.40 -1.79 16 20 C -0.11 -1.14 10.04 -39.61 -0.40 -1.53 16 21 C -0.15 -1.71 9.99 -39.43 -0.39 -2.11 16 22 C 0.12 1.61 6.68 -39.21 -0.26 1.34 16 23 O -0.50 -6.40 12.64 -19.43 -0.25 -6.64 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 29 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 6.17 6.16 -40.82 -0.25 5.92 16 34 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 35 H 0.11 1.24 7.69 -51.93 -0.40 0.84 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.39 4.19 9.06 45.56 0.41 4.61 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -29.71 330.04 -7.31 -37.02 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.92 Total: 9.04 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -2.40 Total: -13.40 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.22 Total: -35.58 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.16 Total: -17.65 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.71 -7.31 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315624380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.968 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds