Wall clock time and date at job start Mon Mar 30 2020 01:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46824 * 2 1 4 4 C 1.50699 * 109.46898 * 239.99834 * 2 1 3 5 5 H 1.07997 * 120.00085 * 239.99795 * 4 2 1 6 6 C 1.37877 * 119.99851 * 60.00386 * 4 2 1 7 7 N 1.31515 * 120.00325 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00049 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47240 * 59.99776 * 8 6 4 10 10 H 1.48503 * 109.47470 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47295 * 299.99756 * 8 6 4 12 12 C 1.52999 * 109.47092 * 120.00049 * 2 1 3 13 13 N 1.46501 * 109.47132 * 300.00084 * 12 2 1 14 14 C 1.34777 * 120.00217 * 180.02562 * 13 12 2 15 15 O 1.21277 * 119.99809 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00333 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.47149 * 179.97438 * 16 14 13 18 18 C 1.38158 * 120.02768 * 264.99832 * 17 16 14 19 19 C 1.38250 * 120.05410 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11168 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05855 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.02445 * 84.95894 * 17 16 14 23 23 O 1.35901 * 120.05828 * 0.03985 * 22 17 16 24 24 H 1.08999 * 109.46990 * 299.99998 * 1 2 3 25 25 H 1.08997 * 109.47137 * 59.99876 * 1 2 3 26 26 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47365 * 299.99984 * 3 2 1 29 29 H 1.08999 * 109.47336 * 60.00213 * 3 2 1 30 30 H 0.96996 * 120.00554 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.46998 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.47267 * 59.99859 * 12 2 1 33 33 H 0.97005 * 119.99920 * 0.02562 * 13 12 2 34 34 H 1.08999 * 109.46777 * 59.99444 * 16 14 13 35 35 H 1.08996 * 109.46853 * 299.99672 * 16 14 13 36 36 H 1.08004 * 119.97750 * 359.97438 * 18 17 16 37 37 H 1.07999 * 119.94133 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.97275 * 180.02562 * 20 19 18 39 39 H 1.07994 * 120.03307 * 179.73079 * 21 20 19 40 40 H 0.96701 * 113.99785 * 269.95941 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0082 10 1 1.8268 -0.4199 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5749 -1.4768 3.7808 16 6 1.3758 0.2199 4.9000 17 6 1.8780 -0.4906 6.1305 18 6 1.0861 -1.4346 6.7554 19 6 1.5461 -2.0864 7.8845 20 6 2.7996 -1.7958 8.3910 21 6 3.5956 -0.8536 7.7693 22 6 3.1361 -0.1979 6.6360 23 8 3.9170 0.7303 6.0231 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2493 33 1 0.9937 0.7578 2.3564 34 1 0.2858 0.2200 4.9003 35 1 1.7392 1.2475 4.8997 36 1 0.1065 -1.6630 6.3620 37 1 0.9254 -2.8237 8.3718 38 1 3.1568 -2.3066 9.2729 39 1 4.5727 -0.6239 8.1677 40 1 4.4946 0.3675 5.3377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315624380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:14 Heat of formation + Delta-G solvation = -86.941966 kcal Electronic energy + Delta-G solvation = -21333.067362 eV Core-core repulsion = 18111.678934 eV Total energy + Delta-G solvation = -3221.388428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26981 -40.10196 -38.07906 -37.50715 -34.96572 -33.80260 -32.63909 -30.82684 -28.84599 -27.55615 -27.37537 -26.28885 -23.52217 -22.85511 -21.34085 -20.58646 -19.25589 -18.31688 -17.60237 -17.24222 -17.00758 -16.57555 -16.44631 -16.04390 -15.79960 -14.99023 -14.76359 -14.63038 -14.60557 -14.05537 -13.94388 -13.28524 -13.12842 -13.05440 -13.01133 -12.92461 -12.65193 -12.62778 -12.27314 -12.21589 -12.13530 -11.47705 -11.36420 -11.26548 -10.89075 -10.69137 -10.39558 -9.91530 -9.76699 -9.47234 -8.02349 -6.18335 0.31939 0.40960 1.43801 1.45117 1.51541 1.71964 2.33471 2.49580 2.78346 3.21165 3.41116 3.69624 3.93368 4.06610 4.19521 4.35233 4.46286 4.52138 4.56138 4.59413 4.72213 4.72991 4.96331 5.00678 5.06746 5.09093 5.13084 5.20316 5.38201 5.44595 5.54863 5.58621 5.61239 5.67028 5.67918 5.94387 6.15924 6.22417 6.43669 6.69653 6.74903 6.86122 7.34983 7.49510 8.96232 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037161 B = 0.003437 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.303751 B = 8145.834246 C = 8152.171810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.711 5.711 14 C 0.509 3.491 15 O -0.587 6.587 16 C -0.093 4.093 17 C -0.107 4.107 18 C -0.106 4.106 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.159 4.159 22 C 0.097 3.903 23 O -0.508 6.508 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.409 0.591 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -0.297 19.118 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.025 3.975 13 N -0.362 5.362 14 C 0.297 3.703 15 O -0.468 6.468 16 C -0.132 4.132 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.152 4.152 20 C -0.126 4.126 21 C -0.177 4.177 22 C 0.053 3.947 23 O -0.320 6.320 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.246 0.754 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.401 -0.471 19.396 19.406 hybrid contribution 0.512 -0.447 -1.712 1.841 sum 0.111 -0.918 17.684 17.708 Atomic orbital electron populations 1.21674 0.97100 0.98627 1.00473 1.18350 0.93269 0.93016 0.90312 1.21667 0.97877 0.97852 1.00435 1.21266 1.31795 1.12207 0.91687 0.93810 1.25445 0.95134 0.95587 1.00951 1.69896 1.36926 1.23275 1.23675 0.85837 0.78642 0.78831 0.79623 1.20265 1.20820 1.20256 1.21227 0.96911 0.94964 0.84356 1.46152 1.52842 1.31973 1.05248 1.21082 0.79837 0.84186 0.85185 1.90658 1.40276 1.28419 1.87483 1.20593 1.03955 1.00543 0.88130 1.19846 0.95533 0.98722 0.96673 1.21240 1.00377 0.94891 0.95937 1.21478 0.96821 1.00413 0.96441 1.21377 0.94049 0.96835 1.00377 1.21637 1.01667 0.97461 0.96955 1.18556 0.90707 0.91254 0.94221 1.84679 1.56899 1.34388 1.56010 0.94245 0.91963 0.96384 0.96378 0.91981 0.94304 0.93013 0.94450 0.94568 0.75370 0.85458 0.86417 0.84417 0.83276 0.83035 0.84342 0.74358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -27.99 8.01 25.60 0.21 -27.78 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.51 5.15 84.65 0.44 1.94 16 7 N -0.90 -47.77 9.35 21.45 0.20 -47.57 16 8 Si 0.94 42.45 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.15 6.24 4.50 86.38 0.39 6.63 16 13 N -0.71 -23.47 4.96 -463.08 -2.30 -25.77 16 14 C 0.51 16.32 7.82 87.66 0.69 17.00 16 15 O -0.59 -23.52 16.03 -3.02 -0.05 -23.57 16 16 C -0.09 -2.17 5.55 29.10 0.16 -2.01 16 17 C -0.11 -2.69 4.39 -19.77 -0.09 -2.78 16 18 C -0.11 -2.35 9.68 22.25 0.22 -2.13 16 19 C -0.13 -2.51 10.04 22.28 0.22 -2.29 16 20 C -0.11 -2.00 10.04 22.25 0.22 -1.78 16 21 C -0.16 -3.47 9.99 22.37 0.22 -3.25 16 22 C 0.10 2.49 6.68 22.51 0.15 2.64 16 23 O -0.51 -12.72 12.64 -92.44 -1.17 -13.89 16 24 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 25 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 26 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 29 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 30 H 0.26 13.37 8.31 -92.71 -0.77 12.59 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 11.66 6.16 -92.70 -0.57 11.09 16 34 H 0.13 2.26 8.05 -2.39 -0.02 2.24 16 35 H 0.12 2.49 7.69 -2.39 -0.02 2.47 16 36 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.40 8.52 9.06 -74.06 -0.67 7.85 16 Total: -1.00 -63.84 330.04 2.49 -61.35 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.19 Total: 25.87 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.96 Total: -20.90 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -2.10 Total: -73.34 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.22 Total: -37.46 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.84 2.49 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315624380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.590 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds