Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00372 * 2 1 4 4 C 1.38998 * 119.91150 * 180.02562 * 3 2 1 5 5 C 1.37696 * 120.08568 * 180.30414 * 4 3 2 6 6 C 1.39738 * 119.91059 * 359.45088 * 5 4 3 7 7 C 1.47608 * 120.08581 * 180.27807 * 6 5 4 8 8 O 1.21590 * 119.99957 * 180.26917 * 7 6 5 9 9 N 1.34776 * 120.00242 * 0.27086 * 7 6 5 10 10 C 1.46497 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47441 * 300.00397 * 11 10 9 13 13 C 1.53005 * 109.46816 * 60.00208 * 11 10 9 14 14 C 1.50697 * 109.47013 * 179.97438 * 11 10 9 15 15 H 1.07998 * 120.00360 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00071 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99817 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00333 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47214 * 90.00117 * 18 16 14 20 20 H 1.48502 * 109.47169 * 210.00165 * 18 16 14 21 21 H 1.48505 * 109.46735 * 330.00149 * 18 16 14 22 22 C 1.39729 * 119.82329 * 0.54857 * 6 5 4 23 23 C 1.37693 * 119.91370 * 359.72412 * 22 6 5 24 24 H 1.09003 * 109.46788 * 299.99869 * 1 2 3 25 25 H 1.08998 * 109.47527 * 59.99216 * 1 2 3 26 26 H 1.08997 * 109.47694 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95393 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.04558 * 179.70572 * 5 4 3 29 29 H 0.96998 * 119.99975 * 0.02562 * 9 7 6 30 30 H 1.08995 * 109.47268 * 299.99720 * 10 9 7 31 31 H 1.09002 * 109.46915 * 60.00415 * 10 9 7 32 32 H 1.09001 * 109.47409 * 59.99696 * 12 11 10 33 33 H 1.08996 * 109.47065 * 179.97438 * 12 11 10 34 34 H 1.09002 * 109.47396 * 299.99724 * 12 11 10 35 35 H 1.09001 * 109.46857 * 59.99977 * 13 11 10 36 36 H 1.09004 * 109.47007 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47038 * 299.99693 * 13 11 10 38 38 H 0.96997 * 119.99690 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.04126 * 179.71144 * 22 6 5 40 40 H 1.07996 * 119.96101 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4334 1.2797 -0.0005 5 6 4.0623 2.5046 0.0058 6 6 3.3031 3.6777 0.0011 7 6 3.9733 4.9929 0.0017 8 8 3.3112 6.0126 0.0026 9 7 5.3192 5.0633 0.0012 10 6 5.9844 6.3686 0.0011 11 6 7.5012 6.1681 0.0011 12 6 7.9123 5.3862 1.2503 13 6 7.9122 5.3862 -1.2482 14 6 8.1854 7.5108 0.0005 15 1 7.5972 8.4166 0.0005 16 6 9.5623 7.5829 -0.0002 17 7 10.2785 6.4798 -0.0007 18 14 10.4105 9.2472 -0.0003 19 1 10.6359 9.6880 1.3997 20 1 11.7152 9.1379 -0.7010 21 1 9.5545 10.2389 -0.6997 22 6 1.9078 3.6025 0.0017 23 6 1.2864 2.3738 0.0011 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0194 0.3725 -0.0014 28 1 5.1409 2.5586 0.0102 29 1 5.8475 4.2498 0.0000 30 1 5.6912 6.9258 -0.8886 31 1 5.6919 6.9254 0.8914 32 1 7.4174 4.4150 1.2503 33 1 8.9928 5.2429 1.2500 34 1 7.6195 5.9431 2.1403 35 1 7.6193 5.9433 -2.1381 36 1 8.9928 5.2437 -1.2485 37 1 7.4173 4.4150 -1.2482 38 1 11.2472 6.5306 -0.0016 39 1 1.3176 4.5070 0.0028 40 1 0.2081 2.3147 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315682285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -55.868807 kcal Electronic energy + Delta-G solvation = -21110.443260 eV Core-core repulsion = 17890.402265 eV Total energy + Delta-G solvation = -3220.040995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46472 -39.25368 -37.19542 -36.24183 -33.36972 -31.35908 -31.11160 -30.07655 -27.69769 -25.72543 -25.69525 -25.02047 -22.95059 -22.60144 -20.17164 -18.90857 -18.43592 -17.48266 -16.32888 -16.04330 -15.84505 -15.13188 -14.92778 -14.71450 -14.63604 -13.84841 -13.61962 -13.58126 -13.05553 -12.91071 -12.55496 -12.54388 -12.23659 -12.12688 -11.43107 -11.23545 -11.20285 -10.98946 -10.85871 -10.69173 -10.38387 -10.20162 -9.63377 -9.62843 -9.26208 -9.22310 -8.78901 -8.54718 -8.39028 -8.21556 -6.01851 -4.11818 0.89296 1.20640 2.96301 3.06272 3.28853 3.35832 3.39638 3.73915 3.94470 4.40736 4.56324 4.63858 4.81696 4.82376 5.04930 5.11232 5.18565 5.24646 5.24978 5.42524 5.84372 6.02858 6.12171 6.21602 6.33525 6.34955 6.46570 6.52543 6.78301 6.82090 6.94369 7.02277 7.02577 7.10560 7.35691 7.55830 7.69813 8.01188 8.05202 8.15938 8.38756 8.69342 8.88960 9.53992 10.99635 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.003324 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.592386 B = 8420.966779 C = 8864.199202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.144 3.856 4 C -0.158 4.158 5 C -0.046 4.046 6 C -0.164 4.164 7 C 0.550 3.450 8 O -0.553 6.553 9 N -0.711 5.711 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.022 4.022 23 C -0.219 4.219 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.397 0.603 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.005 0.995 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.005 0.995 38 H 0.260 0.740 39 H 0.138 0.862 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 -13.157 0.001 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.098 3.902 4 C -0.177 4.177 5 C -0.065 4.065 6 C -0.168 4.168 7 C 0.336 3.664 8 O -0.433 6.433 9 N -0.362 5.362 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.041 4.041 23 C -0.238 4.238 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.233 0.767 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.024 0.976 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.200 -12.656 -0.002 19.779 hybrid contribution 0.505 0.598 0.011 0.783 sum -14.696 -12.057 0.008 19.009 Atomic orbital electron populations 1.23095 0.78199 1.04022 1.01620 1.86032 1.21593 1.27039 1.88198 1.19275 0.92423 0.84118 0.94363 1.20347 0.91239 0.98696 1.07419 1.21211 1.00069 0.90896 0.94331 1.20062 0.94342 0.93528 1.08822 1.18155 0.82751 0.88319 0.77139 1.90735 1.64984 1.36280 1.51308 1.46248 1.05560 1.11374 1.72983 1.21752 0.94749 0.81957 1.00636 1.18362 0.87391 0.95912 0.92847 1.21837 1.04016 0.95428 0.97617 1.21841 1.04032 0.95420 0.97615 1.20985 0.91267 0.91346 1.50816 0.92408 1.24881 0.97351 0.96495 0.94792 1.69804 1.05747 1.26315 1.50612 0.86567 0.78879 0.84301 0.78099 1.20718 1.21273 1.19908 1.21057 0.93348 0.97571 0.92120 1.21189 1.00192 0.91999 1.10379 0.92431 0.92437 0.88168 0.84574 0.84663 0.76685 0.92560 0.92568 0.97559 0.89542 0.95375 0.95373 0.89524 0.97560 0.93005 0.84380 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.18 10.48 -18.84 -0.20 -3.38 16 3 C 0.14 1.62 6.70 -39.02 -0.26 1.36 16 4 C -0.16 -1.80 9.97 -39.50 -0.39 -2.20 16 5 C -0.05 -0.58 9.53 -39.22 -0.37 -0.95 16 6 C -0.16 -2.42 5.88 -104.96 -0.62 -3.04 16 7 C 0.55 10.06 7.76 -12.44 -0.10 9.96 16 8 O -0.55 -11.90 16.34 5.29 0.09 -11.82 16 9 N -0.71 -13.03 4.91 -61.33 -0.30 -13.33 16 10 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.96 8.08 37.15 0.30 -2.65 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.57 9.35 55.43 0.52 -23.05 16 18 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.02 -0.29 9.58 -39.22 -0.38 -0.66 16 23 C -0.22 -2.38 9.01 -39.50 -0.36 -2.73 16 24 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 25 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.14 1.51 6.39 -52.49 -0.34 1.18 16 29 H 0.40 6.51 4.18 -40.82 -0.17 6.34 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 2.15 6.07 -51.93 -0.31 1.83 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 38 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.14 1.80 7.64 -52.48 -0.40 1.40 16 40 H 0.13 1.07 6.28 -52.49 -0.33 0.74 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -29.72 324.99 -6.82 -36.54 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.45 Total: 4.72 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.35 Total: -10.30 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.22 Total: -36.38 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.11 Total: -15.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.72 -6.82 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315682285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.332 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds