Wall clock time and date at job start Mon Mar 30 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00372 * 2 1 4 4 C 1.38998 * 119.91150 * 180.02562 * 3 2 1 5 5 C 1.37696 * 120.08568 * 180.30414 * 4 3 2 6 6 C 1.39738 * 119.91059 * 359.45088 * 5 4 3 7 7 C 1.47608 * 120.08581 * 180.27807 * 6 5 4 8 8 O 1.21590 * 119.99957 * 180.26917 * 7 6 5 9 9 N 1.34776 * 120.00242 * 0.27086 * 7 6 5 10 10 C 1.46497 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47441 * 300.00397 * 11 10 9 13 13 C 1.53005 * 109.46816 * 60.00208 * 11 10 9 14 14 C 1.50697 * 109.47013 * 179.97438 * 11 10 9 15 15 H 1.07998 * 120.00360 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00071 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99817 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00333 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47214 * 90.00117 * 18 16 14 20 20 H 1.48502 * 109.47169 * 210.00165 * 18 16 14 21 21 H 1.48505 * 109.46735 * 330.00149 * 18 16 14 22 22 C 1.39729 * 119.82329 * 0.54857 * 6 5 4 23 23 C 1.37693 * 119.91370 * 359.72412 * 22 6 5 24 24 H 1.09003 * 109.46788 * 299.99869 * 1 2 3 25 25 H 1.08998 * 109.47527 * 59.99216 * 1 2 3 26 26 H 1.08997 * 109.47694 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95393 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.04558 * 179.70572 * 5 4 3 29 29 H 0.96998 * 119.99975 * 0.02562 * 9 7 6 30 30 H 1.08995 * 109.47268 * 299.99720 * 10 9 7 31 31 H 1.09002 * 109.46915 * 60.00415 * 10 9 7 32 32 H 1.09001 * 109.47409 * 59.99696 * 12 11 10 33 33 H 1.08996 * 109.47065 * 179.97438 * 12 11 10 34 34 H 1.09002 * 109.47396 * 299.99724 * 12 11 10 35 35 H 1.09001 * 109.46857 * 59.99977 * 13 11 10 36 36 H 1.09004 * 109.47007 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47038 * 299.99693 * 13 11 10 38 38 H 0.96997 * 119.99690 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.04126 * 179.71144 * 22 6 5 40 40 H 1.07996 * 119.96101 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4334 1.2797 -0.0005 5 6 4.0623 2.5046 0.0058 6 6 3.3031 3.6777 0.0011 7 6 3.9733 4.9929 0.0017 8 8 3.3112 6.0126 0.0026 9 7 5.3192 5.0633 0.0012 10 6 5.9844 6.3686 0.0011 11 6 7.5012 6.1681 0.0011 12 6 7.9123 5.3862 1.2503 13 6 7.9122 5.3862 -1.2482 14 6 8.1854 7.5108 0.0005 15 1 7.5972 8.4166 0.0005 16 6 9.5623 7.5829 -0.0002 17 7 10.2785 6.4798 -0.0007 18 14 10.4105 9.2472 -0.0003 19 1 10.6359 9.6880 1.3997 20 1 11.7152 9.1379 -0.7010 21 1 9.5545 10.2389 -0.6997 22 6 1.9078 3.6025 0.0017 23 6 1.2864 2.3738 0.0011 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0194 0.3725 -0.0014 28 1 5.1409 2.5586 0.0102 29 1 5.8475 4.2498 0.0000 30 1 5.6912 6.9258 -0.8886 31 1 5.6919 6.9254 0.8914 32 1 7.4174 4.4150 1.2503 33 1 8.9928 5.2429 1.2500 34 1 7.6195 5.9431 2.1403 35 1 7.6193 5.9433 -2.1381 36 1 8.9928 5.2437 -1.2485 37 1 7.4173 4.4150 -1.2482 38 1 11.2472 6.5306 -0.0016 39 1 1.3176 4.5070 0.0028 40 1 0.2081 2.3147 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315682285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:44 Heat of formation + Delta-G solvation = -73.505741 kcal Electronic energy + Delta-G solvation = -21111.208055 eV Core-core repulsion = 17890.402265 eV Total energy + Delta-G solvation = -3220.805790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46472 -40.48797 -38.38524 -37.79423 -35.07762 -32.93228 -32.16122 -31.24151 -28.33071 -27.56305 -27.47034 -26.79169 -24.12434 -23.50697 -21.50429 -20.63888 -19.42962 -18.69875 -17.74919 -17.31732 -16.70880 -16.61479 -16.40666 -16.23779 -15.88366 -15.05200 -14.84014 -14.60777 -14.59317 -14.44925 -14.00050 -13.59541 -13.54358 -13.18719 -13.09882 -12.80983 -12.68965 -12.59623 -12.25692 -12.13145 -12.01791 -11.82323 -11.48710 -11.31130 -10.95180 -10.69656 -10.39663 -10.12895 -10.01706 -9.27065 -8.02012 -6.17656 -0.12919 0.30391 1.43015 1.45838 1.54077 1.85743 2.26925 2.29851 2.49836 2.83702 3.21617 3.73372 3.80510 3.83575 4.17975 4.29991 4.41948 4.42404 4.46691 4.50730 4.53546 4.70999 4.77104 4.97317 4.97902 5.05282 5.08936 5.14221 5.19411 5.22787 5.34473 5.36278 5.55340 5.60379 5.67323 5.67810 6.15161 6.21270 6.33726 6.43642 6.63937 6.86160 7.26048 7.49970 8.97054 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.003324 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.592386 B = 8420.966779 C = 8864.199202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.150 3.850 4 C -0.162 4.162 5 C -0.043 4.043 6 C -0.190 4.190 7 C 0.550 3.450 8 O -0.593 6.593 9 N -0.705 5.705 10 C 0.147 3.853 11 C 0.052 3.948 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.529 4.529 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.945 3.055 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.276 1.276 22 C -0.029 4.029 23 C -0.213 4.213 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.408 0.592 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.132 0.868 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.135 -15.275 0.008 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.104 3.896 4 C -0.180 4.180 5 C -0.062 4.062 6 C -0.193 4.193 7 C 0.339 3.661 8 O -0.476 6.476 9 N -0.357 5.357 10 C 0.023 3.977 11 C 0.051 3.949 12 C -0.180 4.180 13 C -0.180 4.180 14 C -0.568 4.568 15 H 0.063 0.937 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.772 3.228 19 H -0.205 1.205 20 H -0.208 1.208 21 H -0.201 1.201 22 C -0.048 4.048 23 C -0.231 4.231 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.140 0.860 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.246 0.754 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.150 0.850 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.291 -14.810 0.005 22.017 hybrid contribution 0.719 1.133 0.009 1.342 sum -15.572 -13.678 0.014 20.726 Atomic orbital electron populations 1.23446 0.76033 1.05964 1.02618 1.86039 1.23833 1.26261 1.87611 1.19444 0.92647 0.84721 0.92828 1.20590 0.91776 0.98878 1.06773 1.21295 1.00564 0.90523 0.93787 1.19823 0.95034 0.92120 1.12329 1.18711 0.82313 0.89391 0.75686 1.90704 1.65668 1.38096 1.53150 1.46046 1.05890 1.10466 1.73265 1.21322 0.93963 0.83302 0.99083 1.18356 0.88051 0.94942 0.93549 1.21685 1.02743 0.96767 0.96766 1.21689 1.02758 0.96759 0.96767 1.21269 0.91837 0.92359 1.51321 0.93743 1.25448 0.97835 0.99177 0.94659 1.69904 1.05807 1.27395 1.50640 0.85755 0.77944 0.81089 0.77988 1.20492 1.20766 1.20141 1.21115 0.92808 0.98468 0.92442 1.21401 1.01655 0.90857 1.09182 0.91400 0.91407 0.85956 0.82568 0.83556 0.75410 0.94207 0.94190 0.94459 0.91700 0.96279 0.96277 0.91683 0.94462 0.92989 0.84982 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.32 -5.44 10.48 -90.32 -0.95 -6.39 16 3 C 0.15 2.94 6.70 22.63 0.15 3.09 16 4 C -0.16 -3.23 9.97 22.32 0.22 -3.01 16 5 C -0.04 -0.99 9.53 22.50 0.21 -0.78 16 6 C -0.19 -5.44 5.88 -20.08 -0.12 -5.56 16 7 C 0.55 20.20 7.76 86.72 0.67 20.87 16 8 O -0.59 -26.19 16.34 -4.00 -0.07 -26.26 16 9 N -0.71 -25.62 4.91 -466.20 -2.29 -27.91 16 10 C 0.15 6.43 4.50 86.38 0.39 6.82 16 11 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 12 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 13 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 14 C -0.53 -28.23 8.01 25.60 0.21 -28.02 16 15 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.51 5.15 84.65 0.44 1.95 16 17 N -0.90 -47.93 9.35 21.45 0.20 -47.73 16 18 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.03 -0.74 9.58 22.50 0.22 -0.52 16 23 C -0.21 -4.08 9.01 22.32 0.20 -3.88 16 24 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 25 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 26 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.15 2.93 6.39 -2.91 -0.02 2.91 16 29 H 0.41 12.77 4.18 -92.71 -0.39 12.38 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 33 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 37 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 38 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 39 H 0.13 3.43 7.64 -2.91 -0.02 3.40 16 40 H 0.16 2.06 6.28 -2.91 -0.02 2.04 16 Total: -1.00 -64.39 324.99 4.43 -59.97 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.66 Total: 18.65 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.84 Total: -15.15 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.09 Total: -75.64 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.01 Total: -32.65 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.39 4.43 -59.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315682285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.538 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds