Wall clock time and date at job start Mon Mar 30 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47701 * 2 1 4 4 C 1.50696 * 109.47053 * 239.99541 * 2 1 3 5 5 H 1.07999 * 120.00202 * 240.00946 * 4 2 1 6 6 C 1.37884 * 119.99746 * 60.00470 * 4 2 1 7 7 N 1.31514 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47364 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00156 * 8 6 4 11 11 H 1.48500 * 109.46997 * 239.99759 * 8 6 4 12 12 C 1.53002 * 109.46673 * 120.00106 * 2 1 3 13 13 N 1.46496 * 109.47425 * 299.99796 * 12 2 1 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47260 * 55.00037 * 16 14 13 18 18 O 1.42902 * 109.46921 * 174.99818 * 16 14 13 19 19 C 1.50703 * 109.47259 * 294.99659 * 16 14 13 20 20 C 1.38234 * 119.99664 * 279.72937 * 19 16 14 21 21 C 1.38240 * 119.99654 * 179.81009 * 20 19 16 22 22 C 1.38233 * 119.99722 * 0.39757 * 21 20 19 23 23 C 1.38234 * 120.00355 * 359.85429 * 22 21 20 24 24 C 1.38229 * 119.99756 * 99.99924 * 19 16 14 25 25 H 1.09002 * 109.46994 * 300.00314 * 1 2 3 26 26 H 1.08998 * 109.46752 * 59.99368 * 1 2 3 27 27 H 1.08996 * 109.47966 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 30 30 H 1.09002 * 109.46695 * 59.99509 * 3 2 1 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46930 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47312 * 59.99561 * 12 2 1 34 34 H 0.96999 * 119.99691 * 359.97438 * 13 12 2 35 35 H 0.96699 * 113.99932 * 59.99379 * 18 16 14 36 36 H 1.08001 * 120.00577 * 359.97438 * 20 19 16 37 37 H 1.07997 * 119.99943 * 180.23035 * 21 20 19 38 38 H 1.08001 * 120.00157 * 179.83373 * 22 21 20 39 39 H 1.07996 * 120.00182 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00428 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1453 -2.2880 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1876 -4.8165 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6696 15 8 2.5791 -1.4738 3.7809 16 6 1.3756 0.2199 4.9000 17 1 0.2893 0.2982 4.8567 18 8 1.7539 -0.5179 6.0639 19 6 1.9767 1.6004 4.9630 20 6 3.2638 1.7728 5.4370 21 6 3.8166 3.0387 5.4911 22 6 3.0794 4.1330 5.0789 23 6 1.7905 3.9611 4.6098 24 6 1.2391 2.6948 4.5521 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 3.1301 1.4423 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7097 1.1618 -3.4844 32 1 3.1299 -0.7217 1.2491 33 1 1.6765 -1.7489 1.2493 34 1 0.9943 0.7582 2.3564 35 1 2.7092 -0.6271 6.1671 36 1 3.8384 0.9183 5.7625 37 1 4.8235 3.1730 5.8579 38 1 3.5103 5.1223 5.1237 39 1 1.2144 4.8161 4.2882 40 1 0.2321 2.5605 4.1855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315701411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:26 Heat of formation + Delta-G solvation = -71.816261 kcal Electronic energy + Delta-G solvation = -21832.311430 eV Core-core repulsion = 18611.578902 eV Total energy + Delta-G solvation = -3220.732528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28434 -38.72967 -36.84056 -35.88778 -33.43785 -31.83038 -30.98743 -30.73431 -27.35237 -25.75490 -25.49556 -24.55000 -22.74416 -21.94394 -20.26914 -18.88642 -17.97440 -17.47371 -16.17377 -15.89142 -15.78710 -14.95233 -14.83599 -14.57182 -14.43501 -13.71342 -13.62166 -13.43860 -13.04509 -12.90806 -12.62292 -12.24822 -12.09187 -11.71618 -11.41255 -11.24367 -11.18995 -10.90823 -10.80892 -10.68301 -10.41898 -10.22168 -9.66866 -9.63317 -9.32842 -9.04501 -8.83911 -8.71784 -8.50116 -8.35676 -6.04502 -4.14457 1.14569 1.27645 2.87033 3.25676 3.34352 3.38547 3.51691 3.69729 4.36511 4.38776 4.51444 4.68799 4.85365 4.97482 5.08588 5.16064 5.22501 5.35321 5.51696 5.77891 5.88371 6.18076 6.28574 6.30259 6.36573 6.38473 6.47399 6.72790 6.79472 6.83351 6.89407 6.96678 6.98867 7.31824 7.38636 7.52853 7.67165 7.96631 7.98165 8.11457 8.35411 8.56948 8.86301 9.51524 10.96995 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.004631 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.173989 B = 6045.048918 C = 6648.499744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.481 3.519 15 O -0.544 6.544 16 C 0.132 3.868 17 H 0.129 0.871 18 O -0.533 6.533 19 C -0.114 4.114 20 C -0.106 4.106 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.105 4.105 25 H 0.005 0.995 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.398 0.602 35 H 0.381 0.619 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 7.033 14.195 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.265 3.735 15 O -0.423 6.423 16 C 0.069 3.931 17 H 0.147 0.853 18 O -0.338 6.338 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.123 4.123 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.230 0.770 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.501 6.397 14.202 15.584 hybrid contribution 0.666 0.014 -1.115 1.299 sum 1.167 6.410 13.087 14.619 Atomic orbital electron populations 1.21833 0.97737 0.99222 1.00071 1.18364 0.92811 0.92797 0.90530 1.21813 0.98534 0.98283 1.00063 1.21016 1.31429 1.12074 0.89856 0.92402 1.24879 0.94843 0.94917 0.98862 1.69809 1.36744 1.22756 1.23137 0.86517 0.78655 0.79762 0.82970 1.19760 1.21038 1.21052 1.21760 0.98185 0.95842 0.83388 1.46296 1.52189 1.31394 1.05950 1.21190 0.81537 0.85170 0.85579 1.90683 1.38288 1.26637 1.86651 1.20735 1.00612 0.86789 0.84931 0.85347 1.86585 1.29602 1.75962 1.41633 1.20242 0.95403 0.94881 1.00987 1.20887 0.94495 0.97683 0.99306 1.21103 0.99856 0.92465 0.99986 1.21203 0.94673 0.98867 0.98757 1.21151 0.95662 0.97145 0.99265 1.21016 0.99950 0.92146 0.99225 0.97572 0.89538 0.95381 0.95527 0.89573 0.97527 0.93049 0.92693 0.92590 0.76644 0.76964 0.86111 0.85877 0.85966 0.85642 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.16 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.47 4.91 -60.29 -0.30 -12.77 16 14 C 0.48 8.28 7.15 -10.98 -0.08 8.20 16 15 O -0.54 -11.27 16.32 -14.29 -0.23 -11.50 16 16 C 0.13 1.77 3.62 -29.03 -0.11 1.67 16 17 H 0.13 1.48 8.00 -51.93 -0.42 1.07 16 18 O -0.53 -7.30 12.84 -55.09 -0.71 -8.01 16 19 C -0.11 -1.41 4.92 -104.63 -0.52 -1.92 16 20 C -0.11 -1.24 9.32 -39.58 -0.37 -1.61 16 21 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 23 C -0.11 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.11 -1.17 9.67 -39.58 -0.38 -1.56 16 25 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 6.36 6.16 -40.82 -0.25 6.11 16 35 H 0.38 4.42 7.24 45.56 0.33 4.75 16 36 H 0.12 1.27 6.78 -52.49 -0.36 0.91 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.18 8.04 -52.49 -0.42 0.75 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -29.77 328.31 -8.26 -38.02 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.96 Total: 9.63 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.51 Total: -13.04 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.22 Total: -35.66 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.94 Total: -19.51 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.77 -8.26 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315701411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.792 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds