Wall clock time and date at job start Mon Mar 30 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47701 * 2 1 4 4 C 1.50696 * 109.47053 * 239.99541 * 2 1 3 5 5 H 1.07999 * 120.00202 * 240.00946 * 4 2 1 6 6 C 1.37884 * 119.99746 * 60.00470 * 4 2 1 7 7 N 1.31514 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47364 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00156 * 8 6 4 11 11 H 1.48500 * 109.46997 * 239.99759 * 8 6 4 12 12 C 1.53002 * 109.46673 * 120.00106 * 2 1 3 13 13 N 1.46496 * 109.47425 * 299.99796 * 12 2 1 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 H 1.09000 * 109.47260 * 55.00037 * 16 14 13 18 18 O 1.42902 * 109.46921 * 174.99818 * 16 14 13 19 19 C 1.50703 * 109.47259 * 294.99659 * 16 14 13 20 20 C 1.38234 * 119.99664 * 279.72937 * 19 16 14 21 21 C 1.38240 * 119.99654 * 179.81009 * 20 19 16 22 22 C 1.38233 * 119.99722 * 0.39757 * 21 20 19 23 23 C 1.38234 * 120.00355 * 359.85429 * 22 21 20 24 24 C 1.38229 * 119.99756 * 99.99924 * 19 16 14 25 25 H 1.09002 * 109.46994 * 300.00314 * 1 2 3 26 26 H 1.08998 * 109.46752 * 59.99368 * 1 2 3 27 27 H 1.08996 * 109.47966 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 30 30 H 1.09002 * 109.46695 * 59.99509 * 3 2 1 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46930 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47312 * 59.99561 * 12 2 1 34 34 H 0.96999 * 119.99691 * 359.97438 * 13 12 2 35 35 H 0.96699 * 113.99932 * 59.99379 * 18 16 14 36 36 H 1.08001 * 120.00577 * 359.97438 * 20 19 16 37 37 H 1.07997 * 119.99943 * 180.23035 * 21 20 19 38 38 H 1.08001 * 120.00157 * 179.83373 * 22 21 20 39 39 H 1.07996 * 120.00182 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00428 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1453 -2.2880 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1876 -4.8165 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4909 3.6696 15 8 2.5791 -1.4738 3.7809 16 6 1.3756 0.2199 4.9000 17 1 0.2893 0.2982 4.8567 18 8 1.7539 -0.5179 6.0639 19 6 1.9767 1.6004 4.9630 20 6 3.2638 1.7728 5.4370 21 6 3.8166 3.0387 5.4911 22 6 3.0794 4.1330 5.0789 23 6 1.7905 3.9611 4.6098 24 6 1.2391 2.6948 4.5521 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 3.1301 1.4423 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7097 1.1618 -3.4844 32 1 3.1299 -0.7217 1.2491 33 1 1.6765 -1.7489 1.2493 34 1 0.9943 0.7582 2.3564 35 1 2.7092 -0.6271 6.1671 36 1 3.8384 0.9183 5.7625 37 1 4.8235 3.1730 5.8579 38 1 3.5103 5.1223 5.1237 39 1 1.2144 4.8161 4.2882 40 1 0.2321 2.5605 4.1855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315701411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:26 Heat of formation + Delta-G solvation = -89.888543 kcal Electronic energy + Delta-G solvation = -21833.095103 eV Core-core repulsion = 18611.578902 eV Total energy + Delta-G solvation = -3221.516201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46099 -39.82140 -38.35333 -37.19906 -35.09852 -33.13057 -32.22361 -31.76942 -28.56618 -27.57211 -27.36570 -26.15978 -23.54264 -22.93844 -21.57449 -20.65044 -19.21068 -18.56128 -17.77272 -17.26537 -16.83527 -16.61367 -16.16694 -15.92778 -15.53561 -14.99458 -14.87669 -14.65916 -14.44439 -14.19923 -14.03309 -13.67962 -13.26152 -13.16566 -13.06675 -12.70362 -12.65011 -12.58429 -12.26607 -12.15017 -11.98492 -11.82349 -11.50133 -11.28314 -10.79829 -10.66532 -10.40865 -10.01334 -9.83980 -9.67661 -8.03158 -6.18659 0.30995 0.48275 1.40783 1.45256 1.52482 1.54312 2.19089 2.47370 2.80776 3.20620 3.38075 3.53993 3.78554 3.88089 4.10423 4.26176 4.31428 4.41045 4.48483 4.60028 4.69576 4.72822 4.96147 4.99645 5.04484 5.09661 5.12423 5.18240 5.32866 5.52472 5.53185 5.55077 5.60895 5.66458 5.66939 6.06607 6.14245 6.20315 6.35754 6.42675 6.61488 6.85213 7.18336 7.49119 8.95964 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.004631 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.173989 B = 6045.048918 C = 6648.499744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.117 4.117 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.146 3.854 13 N -0.700 5.700 14 C 0.481 3.519 15 O -0.583 6.583 16 C 0.146 3.854 17 H 0.151 0.849 18 O -0.541 6.541 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.113 4.113 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.409 0.591 35 H 0.388 0.612 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 8.474 14.994 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.023 3.977 13 N -0.352 5.352 14 C 0.267 3.733 15 O -0.464 6.464 16 C 0.083 3.917 17 H 0.169 0.831 18 O -0.347 6.347 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.246 0.754 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.043 7.860 15.016 16.949 hybrid contribution 0.840 -0.403 -1.322 1.618 sum 0.884 7.456 13.694 15.617 Atomic orbital electron populations 1.21677 0.96958 0.98761 1.00515 1.18360 0.93369 0.93022 0.90173 1.21636 0.97703 0.97787 1.00364 1.21284 1.31691 1.12110 0.91592 0.93895 1.25429 0.95123 0.95584 1.00892 1.69903 1.36988 1.23225 1.23570 0.85723 0.78147 0.78722 0.80302 1.20135 1.20676 1.20693 1.21306 0.96960 0.95153 0.84317 1.46095 1.52344 1.31530 1.05216 1.21970 0.80423 0.84558 0.86320 1.90663 1.39993 1.28502 1.87259 1.20715 1.01659 0.86840 0.82496 0.83135 1.86562 1.30446 1.76200 1.41498 1.20187 0.95937 0.94368 1.02615 1.21107 0.94701 0.98554 0.99777 1.21396 1.00865 0.92177 0.99877 1.21578 0.94682 0.99831 0.97690 1.21497 0.96024 0.97589 0.98862 1.21299 1.00782 0.92118 0.98909 0.94306 0.91789 0.96252 0.96620 0.91778 0.94552 0.92991 0.94493 0.94247 0.75380 0.76139 0.85864 0.84094 0.83680 0.83507 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -27.82 8.01 25.60 0.21 -27.61 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.55 5.15 84.66 0.44 1.98 16 7 N -0.90 -47.31 9.35 21.45 0.20 -47.11 16 8 Si 0.94 42.39 29.54 68.60 2.03 44.42 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.15 6.23 4.50 86.38 0.39 6.61 16 13 N -0.70 -23.84 4.91 -463.06 -2.27 -26.12 16 14 C 0.48 16.12 7.15 87.66 0.63 16.74 16 15 O -0.58 -24.23 16.32 15.97 0.26 -23.97 16 16 C 0.15 3.64 3.62 29.10 0.11 3.75 16 17 H 0.15 3.06 8.00 -2.39 -0.02 3.04 16 18 O -0.54 -14.17 12.84 -130.00 -1.67 -15.84 16 19 C -0.13 -2.95 4.92 -19.87 -0.10 -3.05 16 20 C -0.12 -2.72 9.32 22.27 0.21 -2.51 16 21 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 22 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 23 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.11 -2.20 9.67 22.27 0.22 -1.99 16 25 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 26 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 30 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 31 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 32 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 12.08 6.16 -92.71 -0.57 11.51 16 35 H 0.39 8.79 7.24 -74.06 -0.54 8.26 16 36 H 0.12 2.51 6.78 -2.91 -0.02 2.49 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.18 8.04 -2.91 -0.02 2.16 16 Total: -1.00 -63.50 328.31 2.39 -61.11 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.05 Total: 26.44 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 3.89 Total: -18.94 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -2.07 Total: -73.23 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.41 Total: -39.81 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -63.50 2.39 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315701411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.774 kcal (2) G-P(sol) polarization free energy of solvation -63.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds