Wall clock time and date at job start Mon Mar 30 2020 01:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35654 * 116.99329 * 2 1 4 4 C 1.38702 * 120.15510 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08532 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.39305 * 359.97438 * 5 4 3 7 7 C 1.37785 * 120.29933 * 0.02562 * 6 5 4 8 8 C 1.39712 * 119.91095 * 359.97438 * 7 6 5 9 9 C 1.47527 * 120.19556 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00224 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00212 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00169 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47085 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46799 * 300.00085 * 13 12 11 15 15 C 1.52996 * 109.47186 * 59.99468 * 13 12 11 16 16 C 1.50698 * 109.47232 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99992 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00024 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00082 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99982 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46847 * 90.00438 * 20 18 16 22 22 H 1.48496 * 109.47064 * 210.00222 * 20 18 16 23 23 H 1.48501 * 109.47343 * 330.00510 * 20 18 16 24 24 H 1.09012 * 109.46665 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47324 * 299.99691 * 1 2 3 26 26 H 1.08991 * 109.47362 * 60.00213 * 1 2 3 27 27 H 1.08001 * 119.95424 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.80430 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.85348 * 180.02562 * 6 5 4 30 30 H 1.08000 * 120.04731 * 179.72119 * 7 6 5 31 31 H 0.97003 * 119.99516 * 0.02562 * 11 9 8 32 32 H 1.08996 * 109.47344 * 299.99677 * 12 11 9 33 33 H 1.08992 * 109.47028 * 60.00127 * 12 11 9 34 34 H 1.08996 * 109.47394 * 59.99911 * 14 13 12 35 35 H 1.09002 * 109.46917 * 180.02562 * 14 13 12 36 36 H 1.09004 * 109.47157 * 299.99616 * 14 13 12 37 37 H 1.09001 * 109.46723 * 60.00422 * 15 13 12 38 38 H 1.09002 * 109.47120 * 179.97438 * 15 13 12 39 39 H 1.08995 * 109.47843 * 300.00595 * 15 13 12 40 40 H 0.96995 * 119.99875 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2923 2.3740 0.0005 5 6 1.9204 3.6033 0.0000 6 6 3.3035 3.6838 -0.0005 7 6 4.0666 2.5366 -0.0011 8 6 3.4440 1.2858 -0.0005 9 6 4.2550 0.0534 -0.0017 10 8 3.7095 -1.0333 -0.0017 11 7 5.6005 0.1320 -0.0027 12 6 6.4057 -1.0918 -0.0033 13 6 7.8911 -0.7250 -0.0038 14 6 8.2127 0.0978 -1.2531 15 6 8.2138 0.0974 1.2454 16 6 8.7195 -1.9838 -0.0050 17 1 8.2350 -2.9491 -0.0058 18 6 10.0959 -1.9034 -0.0062 19 7 10.6859 -0.7280 -0.0058 20 14 11.1227 -3.4639 -0.0070 21 1 11.3937 -3.8773 -1.4073 22 1 12.4082 -3.2108 0.6919 23 1 10.3825 -4.5439 0.6936 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 0.2137 2.3194 0.0005 28 1 1.3301 4.5078 0.0008 29 1 3.7858 4.6501 -0.0005 30 1 5.1444 2.6040 -0.0060 31 1 6.0356 0.9989 -0.0024 32 1 6.1769 -1.6777 0.8869 33 1 6.1755 -1.6778 -0.8930 34 1 7.6136 1.0083 -1.2527 35 1 9.2710 0.3588 -1.2537 36 1 7.9829 -0.4880 -2.1431 37 1 7.9846 -0.4888 2.1353 38 1 9.2721 0.3583 1.2452 39 1 7.6146 1.0079 1.2459 40 1 11.6542 -0.6714 -0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316036223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:48 Heat of formation + Delta-G solvation = -51.338762 kcal Electronic energy + Delta-G solvation = -21549.363977 eV Core-core repulsion = 18329.519420 eV Total energy + Delta-G solvation = -3219.844557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46040 -38.69731 -37.30922 -36.21219 -33.25272 -31.60368 -30.48615 -30.17938 -27.40966 -25.69163 -25.68488 -25.04198 -23.34040 -22.03257 -20.19116 -18.87571 -18.28710 -17.09024 -16.25120 -15.83015 -15.78211 -15.05513 -14.83115 -14.66180 -14.51551 -14.43061 -13.54911 -13.11610 -12.98485 -12.85229 -12.38102 -12.30216 -12.13163 -11.69885 -11.33980 -11.24494 -11.21650 -11.15543 -10.83303 -10.66491 -10.34815 -10.16941 -9.59412 -9.46052 -9.16686 -9.13756 -8.75212 -8.42089 -8.33900 -8.14759 -5.99101 -4.08803 0.87735 1.30920 3.16922 3.22026 3.30724 3.37530 3.41719 3.79582 3.99948 4.43039 4.62978 4.68026 4.93754 4.99493 5.02796 5.18927 5.27683 5.30839 5.37939 5.47864 5.71638 6.05928 6.15241 6.31073 6.33075 6.39270 6.55172 6.59468 6.84455 6.85777 6.98686 7.06355 7.11198 7.33081 7.40276 7.59135 7.72661 8.04449 8.12459 8.22510 8.42480 8.82771 8.92535 9.56785 11.02370 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.003962 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.476856 B = 7066.244664 C = 7752.359712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.278 6.278 3 C 0.180 3.820 4 C -0.224 4.224 5 C -0.060 4.060 6 C -0.168 4.168 7 C -0.048 4.048 8 C -0.163 4.163 9 C 0.547 3.453 10 O -0.532 6.532 11 N -0.715 5.715 12 C 0.134 3.866 13 C 0.055 3.945 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.395 0.605 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.005 0.995 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 10.186 0.015 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.131 3.869 4 C -0.242 4.242 5 C -0.079 4.079 6 C -0.186 4.186 7 C -0.067 4.067 8 C -0.167 4.167 9 C 0.334 3.666 10 O -0.410 6.410 11 N -0.367 5.367 12 C 0.011 3.989 13 C 0.054 3.946 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.231 0.769 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.602 9.234 0.019 18.997 hybrid contribution 0.537 -0.161 -0.013 0.561 sum -16.065 9.073 0.006 18.450 Atomic orbital electron populations 1.23136 0.79154 1.04178 1.00908 1.86421 1.20371 1.25416 1.86658 1.19087 0.91089 0.84817 0.91864 1.21207 1.00127 0.92137 1.10760 1.21066 0.94728 0.96920 0.95153 1.20984 0.93786 0.98494 1.05337 1.21279 1.00235 0.90842 0.94322 1.19611 0.90944 0.94651 1.11515 1.17988 0.82557 0.88300 0.77797 1.90782 1.71836 1.28617 1.49729 1.46223 1.05299 1.11332 1.73820 1.21704 0.92146 0.84501 1.00532 1.18369 0.87952 0.95430 0.92837 1.21830 1.03272 0.96090 0.97617 1.21824 1.03269 0.96091 0.97614 1.20992 0.90883 0.91748 1.50677 0.92424 1.24875 0.97776 0.96027 0.94832 1.69803 1.09416 1.22576 1.50718 0.86574 0.79609 0.83619 0.78083 1.20738 1.21297 1.19904 0.88084 0.92783 0.92791 0.85062 0.85565 0.85313 0.84786 0.76903 0.92695 0.92691 0.97569 0.89590 0.95420 0.95411 0.89594 0.97561 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.28 -4.30 8.57 -40.54 -0.35 -4.65 16 3 C 0.18 2.63 6.70 -38.69 -0.26 2.37 16 4 C -0.22 -2.44 9.03 -39.48 -0.36 -2.80 16 5 C -0.06 -0.58 10.03 -39.54 -0.40 -0.97 16 6 C -0.17 -1.73 10.02 -39.63 -0.40 -2.13 16 7 C -0.05 -0.61 9.54 -39.20 -0.37 -0.99 16 8 C -0.16 -2.60 5.89 -104.84 -0.62 -3.22 16 9 C 0.55 10.70 7.76 -12.47 -0.10 10.60 16 10 O -0.53 -12.21 15.16 -16.60 -0.25 -12.47 16 11 N -0.71 -13.65 4.91 -61.35 -0.30 -13.96 16 12 C 0.13 2.96 4.50 -4.04 -0.02 2.94 16 13 C 0.05 1.29 0.50 -155.66 -0.08 1.22 16 14 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 15 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 16 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 28 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.13 1.54 6.40 -52.49 -0.34 1.20 16 31 H 0.39 6.72 4.19 -40.82 -0.17 6.55 16 32 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -31.05 322.91 -7.38 -38.43 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.48 Total: 4.25 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.37 Total: -9.14 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.22 Total: -37.18 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.60 Total: -17.12 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.05 -7.38 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316036223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.906 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds