Wall clock time and date at job start Mon Mar 30 2020 01:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35654 * 116.99329 * 2 1 4 4 C 1.38702 * 120.15510 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08532 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.39305 * 359.97438 * 5 4 3 7 7 C 1.37785 * 120.29933 * 0.02562 * 6 5 4 8 8 C 1.39712 * 119.91095 * 359.97438 * 7 6 5 9 9 C 1.47527 * 120.19556 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00224 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00212 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00169 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47085 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46799 * 300.00085 * 13 12 11 15 15 C 1.52996 * 109.47186 * 59.99468 * 13 12 11 16 16 C 1.50698 * 109.47232 * 180.02562 * 13 12 11 17 17 H 1.08003 * 119.99992 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00024 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00082 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99982 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46847 * 90.00438 * 20 18 16 22 22 H 1.48496 * 109.47064 * 210.00222 * 20 18 16 23 23 H 1.48501 * 109.47343 * 330.00510 * 20 18 16 24 24 H 1.09012 * 109.46665 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47324 * 299.99691 * 1 2 3 26 26 H 1.08991 * 109.47362 * 60.00213 * 1 2 3 27 27 H 1.08001 * 119.95424 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.80430 * 180.02562 * 5 4 3 29 29 H 1.07998 * 119.85348 * 180.02562 * 6 5 4 30 30 H 1.08000 * 120.04731 * 179.72119 * 7 6 5 31 31 H 0.97003 * 119.99516 * 0.02562 * 11 9 8 32 32 H 1.08996 * 109.47344 * 299.99677 * 12 11 9 33 33 H 1.08992 * 109.47028 * 60.00127 * 12 11 9 34 34 H 1.08996 * 109.47394 * 59.99911 * 14 13 12 35 35 H 1.09002 * 109.46917 * 180.02562 * 14 13 12 36 36 H 1.09004 * 109.47157 * 299.99616 * 14 13 12 37 37 H 1.09001 * 109.46723 * 60.00422 * 15 13 12 38 38 H 1.09002 * 109.47120 * 179.97438 * 15 13 12 39 39 H 1.08995 * 109.47843 * 300.00595 * 15 13 12 40 40 H 0.96995 * 119.99875 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2923 2.3740 0.0005 5 6 1.9204 3.6033 0.0000 6 6 3.3035 3.6838 -0.0005 7 6 4.0666 2.5366 -0.0011 8 6 3.4440 1.2858 -0.0005 9 6 4.2550 0.0534 -0.0017 10 8 3.7095 -1.0333 -0.0017 11 7 5.6005 0.1320 -0.0027 12 6 6.4057 -1.0918 -0.0033 13 6 7.8911 -0.7250 -0.0038 14 6 8.2127 0.0978 -1.2531 15 6 8.2138 0.0974 1.2454 16 6 8.7195 -1.9838 -0.0050 17 1 8.2350 -2.9491 -0.0058 18 6 10.0959 -1.9034 -0.0062 19 7 10.6859 -0.7280 -0.0058 20 14 11.1227 -3.4639 -0.0070 21 1 11.3937 -3.8773 -1.4073 22 1 12.4082 -3.2108 0.6919 23 1 10.3825 -4.5439 0.6936 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 0.2137 2.3194 0.0005 28 1 1.3301 4.5078 0.0008 29 1 3.7858 4.6501 -0.0005 30 1 5.1444 2.6040 -0.0060 31 1 6.0356 0.9989 -0.0024 32 1 6.1769 -1.6777 0.8869 33 1 6.1755 -1.6778 -0.8930 34 1 7.6136 1.0083 -1.2527 35 1 9.2710 0.3588 -1.2537 36 1 7.9829 -0.4880 -2.1431 37 1 7.9846 -0.4888 2.1353 38 1 9.2721 0.3583 1.2452 39 1 7.6146 1.0079 1.2459 40 1 11.6542 -0.6714 -0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316036223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:47 Heat of formation + Delta-G solvation = -69.597541 kcal Electronic energy + Delta-G solvation = -21550.155737 eV Core-core repulsion = 18329.519420 eV Total energy + Delta-G solvation = -3220.636317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54671 -40.09666 -38.27859 -38.00069 -35.00803 -33.06693 -31.93278 -31.06585 -28.25218 -27.57108 -27.47506 -26.84324 -24.53795 -22.93812 -21.58388 -20.62932 -19.48502 -18.31936 -17.70142 -17.30668 -16.78630 -16.61576 -16.24503 -16.05897 -15.82026 -15.55823 -14.82378 -14.55540 -14.55060 -14.38243 -13.94984 -13.49434 -13.17372 -13.11076 -13.06809 -12.68289 -12.59937 -12.53610 -12.25334 -12.14480 -12.06772 -12.01754 -11.49309 -11.27420 -10.81181 -10.67646 -10.39722 -10.13644 -9.86430 -9.20572 -8.02094 -6.17765 -0.10228 0.43308 1.42866 1.45364 1.54054 1.96137 2.29461 2.38777 2.50584 2.89230 3.21299 3.74636 3.82693 4.03777 4.24552 4.37134 4.38422 4.40226 4.47701 4.49914 4.56380 4.69565 4.71173 4.87180 4.98363 5.04600 5.11463 5.18599 5.21628 5.34727 5.36522 5.48660 5.58835 5.66491 5.67193 5.79691 6.14254 6.20451 6.43335 6.44328 6.70512 6.85452 7.34469 7.49648 8.97073 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.003962 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.476856 B = 7066.244664 C = 7752.359712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.159 3.841 4 C -0.220 4.220 5 C -0.045 4.045 6 C -0.163 4.163 7 C -0.053 4.053 8 C -0.202 4.202 9 C 0.544 3.456 10 O -0.578 6.578 11 N -0.708 5.708 12 C 0.150 3.850 13 C 0.051 3.949 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.530 4.530 17 H 0.043 0.957 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.277 1.277 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.406 0.594 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.905 12.965 0.009 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.111 3.889 4 C -0.238 4.238 5 C -0.063 4.063 6 C -0.181 4.181 7 C -0.072 4.072 8 C -0.206 4.206 9 C 0.333 3.667 10 O -0.459 6.459 11 N -0.361 5.361 12 C 0.026 3.974 13 C 0.050 3.950 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.569 4.569 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.773 3.227 21 H -0.205 1.205 22 H -0.206 1.206 23 H -0.202 1.202 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.178 0.822 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.159 0.841 31 H 0.244 0.756 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.001 12.050 0.013 21.662 hybrid contribution 0.862 -0.949 -0.012 1.282 sum -17.139 11.101 0.001 20.420 Atomic orbital electron populations 1.23418 0.76686 1.05270 1.02742 1.86356 1.23209 1.26767 1.86955 1.19414 0.91016 0.85832 0.92600 1.21558 1.01456 0.91256 1.09548 1.21619 0.94820 0.97831 0.91983 1.21402 0.94282 0.98797 1.03611 1.21437 1.00912 0.90514 0.94288 1.19471 0.91483 0.93825 1.15791 1.18661 0.82449 0.89328 0.76249 1.90739 1.72550 1.30756 1.51853 1.46020 1.05356 1.10647 1.74051 1.21272 0.91900 0.85514 0.98732 1.18373 0.88198 0.94776 0.93650 1.21668 1.02388 0.97029 0.96665 1.21663 1.02385 0.97030 0.96664 1.21253 0.91788 0.92362 1.51457 0.93907 1.25441 0.98520 0.98479 0.94590 1.69898 1.09585 1.23609 1.50578 0.85747 0.78313 0.80656 0.78014 1.20453 1.20624 1.20217 0.87614 0.90836 0.90847 0.82194 0.81364 0.82066 0.84137 0.75577 0.94594 0.94567 0.94525 0.91592 0.96419 0.96404 0.91595 0.94518 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.35 16 2 O -0.32 -10.04 8.57 -68.77 -0.59 -10.63 16 3 C 0.16 4.53 6.70 22.84 0.15 4.68 16 4 C -0.22 -4.06 9.03 22.34 0.20 -3.86 16 5 C -0.04 -0.63 10.03 22.30 0.22 -0.41 16 6 C -0.16 -2.68 10.02 22.24 0.22 -2.45 16 7 C -0.05 -1.24 9.54 22.52 0.21 -1.02 16 8 C -0.20 -6.36 5.89 -20.01 -0.12 -6.48 16 9 C 0.54 21.92 7.76 86.69 0.67 22.60 16 10 O -0.58 -27.97 15.16 16.90 0.26 -27.71 16 11 N -0.71 -27.48 4.91 -466.28 -2.29 -29.77 16 12 C 0.15 6.88 4.50 86.38 0.39 7.27 16 13 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 14 C -0.12 -5.48 8.08 71.98 0.58 -4.89 16 15 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 16 C -0.53 -28.87 8.01 25.60 0.21 -28.67 16 17 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 18 C 0.03 1.58 5.15 84.65 0.44 2.02 16 19 N -0.90 -48.30 9.35 21.45 0.20 -48.10 16 20 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 26 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 27 H 0.16 1.93 6.30 -2.91 -0.02 1.91 16 28 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 29 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.14 2.94 6.40 -2.91 -0.02 2.92 16 31 H 0.41 13.55 4.19 -92.71 -0.39 13.17 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 35 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 3.30 6.07 -2.39 -0.01 3.29 16 39 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 40 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -70.33 322.91 5.11 -65.21 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.66 Total: 18.03 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.85 Total: -12.36 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.09 Total: -77.87 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.33 Total: -38.34 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.33 5.11 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316036223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.386 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds