Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47176 * 120.00605 * 2 1 3 5 5 O 1.42903 * 109.46972 * 299.99578 * 4 2 1 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 C 1.50705 * 109.46755 * 240.00333 * 2 1 3 14 14 O 1.21284 * 119.99847 * 240.00119 * 13 2 1 15 15 N 1.34774 * 119.99901 * 60.00210 * 13 2 1 16 16 C 1.37098 * 119.99923 * 179.97438 * 15 13 2 17 17 H 1.08001 * 119.99914 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99953 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99697 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46724 * 120.00322 * 20 18 16 23 23 H 1.48494 * 109.47239 * 240.00112 * 20 18 16 24 24 H 1.09000 * 109.46969 * 299.99808 * 1 2 3 25 25 H 1.09005 * 109.47251 * 59.99362 * 1 2 3 26 26 H 1.08993 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47805 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47412 * 300.00539 * 3 2 1 29 29 H 1.09000 * 109.46876 * 60.00135 * 3 2 1 30 30 H 1.09005 * 109.47112 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47202 * 59.99750 * 4 2 1 32 32 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 33 33 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 39 39 H 0.97001 * 120.00206 * 359.97438 * 15 13 2 40 40 H 0.97005 * 119.99520 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.5637 -0.0477 2.4160 6 6 1.9859 -0.6438 3.6441 7 6 1.4296 0.1440 4.8022 8 6 0.1969 -0.1858 5.3338 9 6 -0.3132 0.5365 6.3964 10 6 0.4097 1.5882 6.9277 11 6 1.6399 1.9214 6.3926 12 6 2.1521 1.1961 5.3330 13 6 2.0323 -0.7104 -1.2306 14 8 2.7295 -1.6965 -1.1194 15 7 1.7066 -0.2498 -2.4546 16 6 2.1640 -0.8957 -3.5741 17 1 2.7849 -1.7739 -3.4750 18 6 1.8278 -0.4212 -4.8360 19 7 1.0720 0.6470 -4.9565 20 14 2.4516 -1.3009 -6.3613 21 1 3.2774 -2.4672 -5.9572 22 1 1.2971 -1.7687 -7.1698 23 1 3.2756 -0.3666 -7.1695 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7489 1.2491 32 1 3.0748 -0.6419 3.6937 33 1 1.6217 -1.6700 3.6941 34 1 -0.3677 -1.0078 4.9190 35 1 -1.2764 0.2791 6.8115 36 1 0.0113 2.1522 7.7581 37 1 2.2028 2.7458 6.8048 38 1 3.1155 1.4533 4.9181 39 1 1.1487 0.5387 -2.5435 40 1 0.8371 0.9780 -5.8375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337441675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -74.047586 kcal Electronic energy + Delta-G solvation = -20987.632439 eV Core-core repulsion = 17766.803153 eV Total energy + Delta-G solvation = -3220.829286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.53930 -38.98501 -37.27625 -34.29099 -33.90870 -31.86177 -31.04147 -31.03330 -26.80634 -26.63127 -25.22790 -25.06697 -22.71655 -21.59448 -21.40583 -18.36342 -17.84558 -17.05322 -16.41306 -15.92982 -15.51389 -15.17902 -14.76119 -14.71703 -14.28947 -13.74745 -13.73504 -13.51977 -13.06477 -12.97635 -12.77189 -12.49112 -12.05752 -11.65032 -11.57442 -11.43172 -11.39169 -11.13803 -11.10585 -10.95980 -10.53158 -10.38479 -10.33157 -10.10172 -9.53578 -9.36945 -9.05784 -8.96638 -8.30041 -7.97529 -6.42503 -3.83289 1.13711 1.26383 3.15726 3.26388 3.33340 3.47404 3.89942 4.01617 4.22501 4.69524 4.73748 4.85976 4.97490 5.07474 5.17444 5.20492 5.32016 5.33972 5.46640 5.47266 5.53188 5.62956 5.83311 5.90132 5.94795 6.06809 6.14498 6.18060 6.29950 6.32505 6.34574 6.35049 6.48556 6.49210 6.72928 6.78492 6.83896 7.39658 7.54703 8.05121 8.59249 9.16098 9.53955 10.04306 10.75092 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046420 B = 0.003063 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.041538 B = 9139.953464 C = 9257.284041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 C -0.133 4.133 4 C 0.092 3.908 5 O -0.380 6.380 6 C 0.102 3.898 7 C -0.083 4.083 8 C -0.099 4.099 9 C -0.125 4.125 10 C -0.119 4.119 11 C -0.125 4.125 12 C -0.099 4.099 13 C 0.452 3.548 14 O -0.600 6.600 15 N -0.554 5.554 16 C -0.301 4.301 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.899 5.899 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.394 0.606 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 2.989 19.769 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 C -0.190 4.190 4 C 0.016 3.984 5 O -0.299 6.299 6 C 0.025 3.975 7 C -0.083 4.083 8 C -0.117 4.117 9 C -0.143 4.143 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.117 4.117 13 C 0.238 3.762 14 O -0.486 6.486 15 N -0.189 5.189 16 C -0.431 4.431 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.540 5.540 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.228 0.772 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.825 2.589 19.625 19.879 hybrid contribution 0.073 -0.105 -0.917 0.926 sum -1.752 2.484 18.708 18.954 Atomic orbital electron populations 1.21761 0.93103 1.02007 1.02168 1.20546 0.97119 0.96574 0.93124 1.21761 1.00957 0.94154 1.02168 1.22195 0.98090 0.94989 0.83157 1.87880 1.74897 1.54374 1.12771 1.21246 0.98063 0.95183 0.83003 1.19694 0.95275 0.97085 0.96273 1.21106 0.94813 0.99814 0.95985 1.21141 0.99936 0.96259 0.96965 1.21170 0.95104 0.97467 0.99982 1.21142 0.96288 0.99887 0.96979 1.21104 1.00072 0.94521 0.96021 1.19573 0.85570 0.86901 0.84183 1.90503 1.42765 1.28751 1.86565 1.41832 1.45395 1.27520 1.04146 1.19779 1.29234 1.10901 0.83143 0.87859 1.25274 0.96844 0.96469 0.99284 1.69623 1.36557 1.22832 1.24991 0.85805 0.78504 0.79263 0.80796 1.19220 1.20721 1.20717 0.91713 0.92172 0.92778 0.92778 0.92172 0.91714 0.92723 0.92727 0.92598 0.92592 0.85886 0.86043 0.86205 0.86042 0.85888 0.77211 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.22 37.16 0.31 -1.97 16 2 C -0.07 -1.32 0.70 -155.66 -0.11 -1.43 16 3 C -0.13 -2.28 8.22 37.16 0.31 -1.97 16 4 C 0.09 1.60 4.09 37.16 0.15 1.75 16 5 O -0.38 -5.83 8.98 -35.23 -0.32 -6.14 16 6 C 0.10 1.27 6.06 36.01 0.22 1.49 16 7 C -0.08 -0.98 5.51 -104.62 -0.58 -1.55 16 8 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 11 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 12 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 13 C 0.45 10.92 6.43 -10.98 -0.07 10.84 16 14 O -0.60 -16.45 15.56 5.55 0.09 -16.36 16 15 N -0.55 -14.25 5.07 -10.96 -0.06 -14.31 16 16 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 17 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 19 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 20 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H 0.06 1.00 7.68 -51.93 -0.40 0.61 16 25 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16 29 H 0.06 1.00 7.68 -51.93 -0.40 0.61 16 30 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.39 9.78 6.73 -40.82 -0.27 9.51 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -31.15 339.14 -7.46 -38.61 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.01 Total: 9.30 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.98 Total: -8.44 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.67 Total: -38.12 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.23 Total: -22.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.15 -7.46 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337441675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.439 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds