Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47176 * 120.00605 * 2 1 3 5 5 O 1.42903 * 109.46972 * 299.99578 * 4 2 1 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 C 1.50705 * 109.46755 * 240.00333 * 2 1 3 14 14 O 1.21284 * 119.99847 * 240.00119 * 13 2 1 15 15 N 1.34774 * 119.99901 * 60.00210 * 13 2 1 16 16 C 1.37098 * 119.99923 * 179.97438 * 15 13 2 17 17 H 1.08001 * 119.99914 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99953 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99977 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99697 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46724 * 120.00322 * 20 18 16 23 23 H 1.48494 * 109.47239 * 240.00112 * 20 18 16 24 24 H 1.09000 * 109.46969 * 299.99808 * 1 2 3 25 25 H 1.09005 * 109.47251 * 59.99362 * 1 2 3 26 26 H 1.08993 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47805 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47412 * 300.00539 * 3 2 1 29 29 H 1.09000 * 109.46876 * 60.00135 * 3 2 1 30 30 H 1.09005 * 109.47112 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47202 * 59.99750 * 4 2 1 32 32 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 33 33 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 39 39 H 0.97001 * 120.00206 * 359.97438 * 15 13 2 40 40 H 0.97005 * 119.99520 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.5637 -0.0477 2.4160 6 6 1.9859 -0.6438 3.6441 7 6 1.4296 0.1440 4.8022 8 6 0.1969 -0.1858 5.3338 9 6 -0.3132 0.5365 6.3964 10 6 0.4097 1.5882 6.9277 11 6 1.6399 1.9214 6.3926 12 6 2.1521 1.1961 5.3330 13 6 2.0323 -0.7104 -1.2306 14 8 2.7295 -1.6965 -1.1194 15 7 1.7066 -0.2498 -2.4546 16 6 2.1640 -0.8957 -3.5741 17 1 2.7849 -1.7739 -3.4750 18 6 1.8278 -0.4212 -4.8360 19 7 1.0720 0.6470 -4.9565 20 14 2.4516 -1.3009 -6.3613 21 1 3.2774 -2.4672 -5.9572 22 1 1.2971 -1.7687 -7.1698 23 1 3.2756 -0.3666 -7.1695 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7489 1.2491 32 1 3.0748 -0.6419 3.6937 33 1 1.6217 -1.6700 3.6941 34 1 -0.3677 -1.0078 4.9190 35 1 -1.2764 0.2791 6.8115 36 1 0.0113 2.1522 7.7581 37 1 2.2028 2.7458 6.8048 38 1 3.1155 1.4533 4.9181 39 1 1.1487 0.5387 -2.5435 40 1 0.8371 0.9780 -5.8375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337441675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = -92.231904 kcal Electronic energy + Delta-G solvation = -20988.420970 eV Core-core repulsion = 17766.803153 eV Total energy + Delta-G solvation = -3221.617817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91463 -40.17728 -38.61458 -36.07633 -35.70616 -33.23456 -32.58993 -31.76653 -28.21967 -27.81382 -27.09191 -26.38686 -23.44892 -23.34173 -22.21652 -20.29794 -19.70177 -18.10717 -17.57517 -17.02991 -16.98174 -16.62920 -16.22787 -15.89675 -15.88303 -15.28880 -15.16281 -14.72216 -14.26663 -14.18568 -13.91434 -13.62804 -13.51953 -13.17083 -13.04340 -12.90709 -12.89987 -12.73948 -12.43759 -12.12564 -12.02605 -11.85105 -11.83209 -11.64273 -11.54488 -10.60043 -10.27037 -10.04585 -9.79778 -9.73773 -8.49051 -5.98413 0.35892 0.52496 1.35286 1.41134 1.55460 1.99326 2.25055 2.49683 3.00813 3.17756 3.38828 3.74021 3.90473 3.94878 4.03665 4.06176 4.17805 4.31939 4.35101 4.43131 4.44413 4.58013 4.63029 4.69269 4.78244 4.79266 4.88886 4.93802 5.05329 5.09472 5.18273 5.30227 5.31066 5.40281 5.57437 5.63127 5.70502 5.96823 6.11375 6.18105 6.54363 7.07974 7.51048 8.04685 8.68447 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046420 B = 0.003063 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.041538 B = 9139.953464 C = 9257.284041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.104 3.896 5 O -0.382 6.382 6 C 0.097 3.903 7 C -0.104 4.104 8 C -0.113 4.113 9 C -0.130 4.130 10 C -0.120 4.120 11 C -0.130 4.130 12 C -0.113 4.113 13 C 0.449 3.551 14 O -0.637 6.637 15 N -0.560 5.560 16 C -0.337 4.337 17 H 0.080 0.920 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.994 3.006 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.397 0.603 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 3.997 20.792 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.069 4.069 3 C -0.183 4.183 4 C 0.027 3.973 5 O -0.301 6.301 6 C 0.021 3.979 7 C -0.104 4.104 8 C -0.131 4.131 9 C -0.148 4.148 10 C -0.138 4.138 11 C -0.148 4.148 12 C -0.131 4.131 13 C 0.236 3.764 14 O -0.526 6.526 15 N -0.196 5.196 16 C -0.466 4.466 17 H 0.098 0.902 18 C -0.211 4.211 19 N -0.558 5.558 20 Si 0.818 3.182 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.195 1.195 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.231 0.769 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.554 3.621 20.663 21.133 hybrid contribution 0.278 -0.396 -1.123 1.223 sum -2.276 3.225 19.540 19.935 Atomic orbital electron populations 1.21713 0.91498 1.01997 1.03068 1.20496 0.98285 0.97046 0.91084 1.21712 1.00618 0.92878 1.03068 1.21899 0.97360 0.94397 0.83640 1.87852 1.74916 1.54388 1.12982 1.21422 0.98662 0.95728 0.82074 1.19716 0.96193 0.97997 0.96487 1.21292 0.94716 1.00404 0.96718 1.21456 1.00856 0.96041 0.96420 1.21553 0.94749 0.97186 1.00280 1.21457 0.96717 1.00163 0.96435 1.21290 1.00439 0.94648 0.96751 1.20504 0.84299 0.86333 0.85226 1.90468 1.44266 1.30521 1.87304 1.41870 1.45698 1.27637 1.04350 1.19748 1.30754 1.11363 0.84775 0.90202 1.26074 0.96498 0.96985 1.01546 1.69681 1.36568 1.23361 1.26160 0.84856 0.78242 0.78069 0.77069 1.19754 1.19491 1.19483 0.89444 0.92503 0.93295 0.93295 0.92504 0.89445 0.93674 0.93677 0.91963 0.91956 0.85464 0.83906 0.83596 0.83905 0.85466 0.76861 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.22 71.98 0.59 -3.60 16 2 C -0.07 -2.48 0.70 -52.93 -0.04 -2.51 16 3 C -0.13 -4.20 8.22 71.98 0.59 -3.60 16 4 C 0.10 3.62 4.09 71.98 0.29 3.91 16 5 O -0.38 -11.37 8.98 -148.98 -1.34 -12.71 16 6 C 0.10 2.37 6.06 71.24 0.43 2.80 16 7 C -0.10 -2.34 5.51 -19.86 -0.11 -2.45 16 8 C -0.11 -2.29 9.70 22.27 0.22 -2.08 16 9 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 10 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 11 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 12 C -0.11 -2.29 9.70 22.27 0.22 -2.08 16 13 C 0.45 22.18 6.43 87.66 0.56 22.74 16 14 O -0.64 -36.12 15.56 -3.04 -0.05 -36.17 16 15 N -0.56 -29.49 5.07 -306.99 -1.56 -31.04 16 16 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 17 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 19 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 20 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H 0.09 2.54 7.68 -2.39 -0.02 2.52 16 25 H 0.06 1.93 7.56 -2.38 -0.02 1.91 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.93 7.57 -2.38 -0.02 1.91 16 29 H 0.09 2.54 7.68 -2.39 -0.02 2.52 16 30 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 31 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.06 1.42 8.08 -2.38 -0.02 1.40 16 33 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 34 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.40 20.03 6.73 -92.71 -0.62 19.41 16 40 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -66.83 339.14 4.48 -62.35 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.40 Total: 32.95 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.71 Total: -11.00 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.27 Total: -80.49 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -1.38 Total: -48.88 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -66.83 4.48 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337441675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.883 kcal (2) G-P(sol) polarization free energy of solvation -66.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds