Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47271 * 2 1 4 4 C 1.52995 * 109.47271 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47501 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00388 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47069 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00369 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.39120 * 119.99860 * 184.37270 * 9 7 6 11 11 C 1.38647 * 120.28887 * 325.34680 * 10 9 7 12 12 C 1.38223 * 120.03661 * 180.26219 * 11 10 9 13 13 C 1.38864 * 120.61570 * 359.73851 * 12 11 10 14 14 C 1.36475 * 120.57506 * 0.02562 * 13 12 11 15 15 C 1.40732 * 119.94463 * 359.97438 * 14 13 12 16 16 C 1.41067 * 120.30097 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00158 * 154.83018 * 16 15 14 18 18 C 1.39960 * 120.00035 * 334.81866 * 16 15 14 19 19 N 1.30850 * 120.00172 * 334.82627 * 18 16 15 20 20 Si 1.86797 * 119.99964 * 154.81633 * 18 16 15 21 21 H 1.48493 * 109.47433 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47399 * 300.00688 * 20 18 16 23 23 H 1.48501 * 109.46727 * 60.00450 * 20 18 16 24 24 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47436 * 300.00400 * 1 2 3 26 26 H 1.09004 * 109.46890 * 60.00500 * 1 2 3 27 27 H 1.09001 * 109.47380 * 239.99950 * 2 1 3 28 28 H 1.09007 * 109.46772 * 120.00022 * 2 1 3 29 29 H 1.09001 * 109.46959 * 59.99693 * 3 2 1 30 30 H 1.09004 * 109.46755 * 299.99583 * 3 2 1 31 31 H 1.08994 * 109.47436 * 59.99600 * 4 3 2 32 32 H 1.09007 * 109.46772 * 300.00022 * 4 3 2 33 33 H 1.09004 * 109.46992 * 59.99681 * 6 5 4 34 34 H 1.08999 * 109.47382 * 300.00034 * 6 5 4 35 35 H 0.96996 * 119.99503 * 4.37567 * 9 7 6 36 36 H 1.08002 * 119.97971 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.69606 * 179.76870 * 12 11 10 38 38 H 1.07997 * 119.71651 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.02277 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99936 * 354.62807 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8594 4.3586 0.0000 8 8 5.0010 5.2153 0.0005 9 7 7.1610 4.7087 0.0006 10 6 7.5205 6.0495 0.0925 11 6 6.7369 7.0260 -0.5031 12 6 7.1019 8.3562 -0.4131 13 6 8.2485 8.7299 0.2754 14 6 9.0355 7.7899 0.8750 15 6 8.6863 6.4287 0.7985 16 6 9.4947 5.4508 1.4151 17 1 9.0653 4.5067 1.7162 18 6 10.8533 5.7040 1.6365 19 7 11.4896 6.5646 0.8838 20 14 11.7581 4.8134 3.0067 21 1 13.1754 5.2555 3.0330 22 1 11.1176 5.1279 4.3091 23 1 11.7004 3.3489 2.7676 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.9329 0.9288 -0.8907 32 1 3.9336 0.9285 0.8892 33 1 5.8736 2.4194 -0.8902 34 1 5.8737 2.4187 0.8897 35 1 7.8469 4.0259 -0.0631 36 1 5.8432 6.7468 -1.0415 37 1 6.4895 9.1119 -0.8822 38 1 8.5198 9.7734 0.3369 39 1 9.9251 8.0906 1.4086 40 1 11.0417 6.9689 0.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339172474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -84.372882 kcal Electronic energy + Delta-G solvation = -20692.866565 eV Core-core repulsion = 17471.589541 eV Total energy + Delta-G solvation = -3221.277024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.68168 -38.11118 -37.10458 -35.07468 -33.95964 -33.78184 -30.09602 -29.36397 -28.86314 -26.87821 -25.01270 -23.44826 -21.76937 -21.33048 -20.91377 -19.49350 -18.04436 -16.86853 -16.79606 -16.57259 -15.62915 -15.35000 -14.81432 -14.52919 -14.33332 -14.09084 -13.77135 -13.43602 -13.03404 -12.73938 -12.65865 -12.26777 -12.04106 -11.91774 -11.69605 -11.42792 -11.34495 -11.10484 -11.04060 -10.86808 -10.70167 -10.46233 -10.30138 -9.70776 -9.70376 -9.33270 -9.04948 -8.83933 -7.62827 -7.40472 -6.97712 -4.49626 2.54951 2.78879 3.09995 3.12789 3.21758 3.30954 3.35925 3.94905 4.21557 4.52914 4.67654 4.80090 4.89994 5.04584 5.07133 5.24097 5.27520 5.30314 5.37715 5.47332 5.55338 5.57971 5.64342 5.86155 6.00964 6.08071 6.20522 6.32905 6.48144 6.80697 6.94321 7.06610 7.13548 7.37305 7.52534 7.71148 7.76042 7.91417 8.01046 8.21040 8.33711 8.65906 8.76428 8.95503 9.98227 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.003654 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.249583 B = 7660.641237 C = 8874.952629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.059 3.941 5 O -0.363 6.363 6 C 0.048 3.952 7 C 0.497 3.503 8 O -0.520 6.520 9 N -0.636 5.636 10 C 0.007 3.993 11 C -0.073 4.073 12 C -0.240 4.240 13 C -0.092 4.092 14 C -0.208 4.208 15 C 0.091 3.909 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.040 3.960 19 N -0.794 5.794 20 Si 1.064 2.936 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.402 0.598 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 -12.527 -1.240 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.018 4.018 5 O -0.281 6.281 6 C -0.032 4.032 7 C 0.283 3.717 8 O -0.396 6.396 9 N -0.280 5.280 10 C -0.086 4.086 11 C -0.093 4.093 12 C -0.260 4.260 13 C -0.110 4.110 14 C -0.228 4.228 15 C 0.087 3.913 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.182 4.182 19 N -0.417 5.417 20 Si 0.888 3.112 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.661 -11.869 -0.501 14.702 hybrid contribution -0.935 -0.428 -0.770 1.285 sum -9.596 -12.297 -1.271 15.650 Atomic orbital electron populations 1.21753 0.95440 1.01599 1.02137 1.21442 0.96243 0.96073 1.02135 1.21541 0.93354 0.97089 1.03732 1.22579 0.95343 0.83752 1.00092 1.88008 1.18894 1.25790 1.95401 1.22180 0.83401 0.95401 1.02252 1.20180 0.83173 0.90089 0.78277 1.90670 1.49433 1.51257 1.48266 1.42694 1.06199 1.08031 1.71057 1.17572 1.02083 0.81756 1.07220 1.20720 0.98278 0.92471 0.97806 1.20272 1.00436 0.94951 1.10334 1.20408 0.95032 0.97496 0.98104 1.20752 1.02785 0.92315 1.06955 1.17487 0.91685 0.92818 0.89322 1.20316 0.95762 1.02903 1.36448 0.90791 1.26972 0.95632 0.95642 0.99946 1.70467 1.40564 1.19171 1.11545 0.83641 0.76410 0.75993 0.75162 1.19849 1.20032 1.20192 0.92689 0.92556 0.92575 0.91883 0.91851 0.90931 0.90981 0.93342 0.93291 0.90692 0.90423 0.76249 0.87113 0.88947 0.89134 0.87326 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.15 0.37 -0.70 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -1.20 5.58 -26.73 -0.15 -1.35 16 4 C 0.06 0.66 5.94 37.15 0.22 0.88 16 5 O -0.36 -5.73 9.88 -55.14 -0.54 -6.27 16 6 C 0.05 0.70 6.42 36.00 0.23 0.93 16 7 C 0.50 9.89 7.75 -10.98 -0.09 9.81 16 8 O -0.52 -12.50 13.91 -14.35 -0.20 -12.70 16 9 N -0.64 -13.07 4.90 -9.48 -0.05 -13.12 16 10 C 0.01 0.17 6.33 -83.17 -0.53 -0.35 16 11 C -0.07 -1.78 8.69 -39.44 -0.34 -2.12 16 12 C -0.24 -5.65 10.04 -39.36 -0.39 -6.05 16 13 C -0.09 -2.16 9.97 -39.99 -0.40 -2.56 16 14 C -0.21 -5.29 7.87 -39.28 -0.31 -5.60 16 15 C 0.09 2.34 5.32 -106.65 -0.57 1.77 16 16 C -0.53 -13.06 8.35 -37.86 -0.32 -13.38 16 17 H 0.07 1.74 7.39 -52.49 -0.39 1.35 16 18 C 0.04 0.97 4.95 -17.33 -0.09 0.89 16 19 N -0.79 -20.21 12.32 55.55 0.68 -19.53 16 20 Si 1.06 20.55 30.00 -169.99 -5.10 15.45 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 7.23 7.95 -40.82 -0.32 6.90 16 36 H 0.11 2.71 6.20 -52.49 -0.33 2.39 16 37 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.11 2.81 6.45 -52.49 -0.34 2.47 16 40 H 0.30 7.87 6.62 -40.82 -0.27 7.60 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -30.33 335.67 -8.60 -38.93 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.94 Total: 11.07 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.51 Total: -18.91 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.64 Total: -32.64 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.74 Total: -18.97 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.10 Total: 15.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.33 -8.60 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339172474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.438 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds