Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47271 * 2 1 4 4 C 1.52995 * 109.47271 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47501 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00388 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47069 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00369 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.39120 * 119.99860 * 184.37270 * 9 7 6 11 11 C 1.38647 * 120.28887 * 325.34680 * 10 9 7 12 12 C 1.38223 * 120.03661 * 180.26219 * 11 10 9 13 13 C 1.38864 * 120.61570 * 359.73851 * 12 11 10 14 14 C 1.36475 * 120.57506 * 0.02562 * 13 12 11 15 15 C 1.40732 * 119.94463 * 359.97438 * 14 13 12 16 16 C 1.41067 * 120.30097 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00158 * 154.83018 * 16 15 14 18 18 C 1.39960 * 120.00035 * 334.81866 * 16 15 14 19 19 N 1.30850 * 120.00172 * 334.82627 * 18 16 15 20 20 Si 1.86797 * 119.99964 * 154.81633 * 18 16 15 21 21 H 1.48493 * 109.47433 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47399 * 300.00688 * 20 18 16 23 23 H 1.48501 * 109.46727 * 60.00450 * 20 18 16 24 24 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47436 * 300.00400 * 1 2 3 26 26 H 1.09004 * 109.46890 * 60.00500 * 1 2 3 27 27 H 1.09001 * 109.47380 * 239.99950 * 2 1 3 28 28 H 1.09007 * 109.46772 * 120.00022 * 2 1 3 29 29 H 1.09001 * 109.46959 * 59.99693 * 3 2 1 30 30 H 1.09004 * 109.46755 * 299.99583 * 3 2 1 31 31 H 1.08994 * 109.47436 * 59.99600 * 4 3 2 32 32 H 1.09007 * 109.46772 * 300.00022 * 4 3 2 33 33 H 1.09004 * 109.46992 * 59.99681 * 6 5 4 34 34 H 1.08999 * 109.47382 * 300.00034 * 6 5 4 35 35 H 0.96996 * 119.99503 * 4.37567 * 9 7 6 36 36 H 1.08002 * 119.97971 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.69606 * 179.76870 * 12 11 10 38 38 H 1.07997 * 119.71651 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.02277 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99936 * 354.62807 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8594 4.3586 0.0000 8 8 5.0010 5.2153 0.0005 9 7 7.1610 4.7087 0.0006 10 6 7.5205 6.0495 0.0925 11 6 6.7369 7.0260 -0.5031 12 6 7.1019 8.3562 -0.4131 13 6 8.2485 8.7299 0.2754 14 6 9.0355 7.7899 0.8750 15 6 8.6863 6.4287 0.7985 16 6 9.4947 5.4508 1.4151 17 1 9.0653 4.5067 1.7162 18 6 10.8533 5.7040 1.6365 19 7 11.4896 6.5646 0.8838 20 14 11.7581 4.8134 3.0067 21 1 13.1754 5.2555 3.0330 22 1 11.1176 5.1279 4.3091 23 1 11.7004 3.3489 2.7676 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.9329 0.9288 -0.8907 32 1 3.9336 0.9285 0.8892 33 1 5.8736 2.4194 -0.8902 34 1 5.8737 2.4187 0.8897 35 1 7.8469 4.0259 -0.0631 36 1 5.8432 6.7468 -1.0415 37 1 6.4895 9.1119 -0.8822 38 1 8.5198 9.7734 0.3369 39 1 9.9251 8.0906 1.4086 40 1 11.0417 6.9689 0.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339172474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -101.058687 kcal Electronic energy + Delta-G solvation = -20693.590116 eV Core-core repulsion = 17471.589541 eV Total energy + Delta-G solvation = -3222.000575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31297 -39.51496 -38.59028 -35.88450 -35.74605 -35.54028 -31.38433 -31.19631 -30.15615 -28.21715 -26.85048 -24.22623 -23.47761 -22.77420 -22.04274 -21.16098 -19.87362 -18.47345 -18.12550 -17.56118 -17.05355 -16.62781 -16.40018 -15.98837 -15.75918 -15.47129 -15.00249 -14.70741 -14.40683 -14.17821 -13.92392 -13.84792 -13.73264 -13.26126 -12.85436 -12.69550 -12.45471 -12.42547 -12.14662 -11.97307 -11.94865 -11.88162 -11.53560 -11.49824 -11.09613 -10.82903 -10.69046 -10.57877 -9.56405 -9.30455 -8.83760 -6.42028 0.73738 0.90537 1.54841 1.65389 1.67587 1.82754 1.94283 2.34765 2.69974 3.02698 3.52849 3.75333 3.97844 4.07021 4.16703 4.22506 4.24355 4.39149 4.39406 4.41921 4.46373 4.67186 4.68429 4.90319 4.93525 4.94485 5.02528 5.06382 5.22997 5.27997 5.34202 5.43990 5.47931 5.65658 5.77763 5.89670 6.00170 6.09006 6.15520 6.33418 6.62229 6.83983 6.91037 7.32324 8.05589 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.003654 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.249583 B = 7660.641237 C = 8874.952629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.054 3.946 5 O -0.400 6.400 6 C 0.058 3.942 7 C 0.492 3.508 8 O -0.568 6.568 9 N -0.632 5.632 10 C 0.001 3.999 11 C -0.090 4.090 12 C -0.243 4.243 13 C -0.095 4.095 14 C -0.228 4.228 15 C 0.065 3.935 16 C -0.542 4.542 17 H 0.084 0.916 18 C 0.007 3.993 19 N -0.814 5.814 20 Si 1.115 2.885 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.250 1.250 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.415 0.585 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 -14.835 -0.809 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.022 4.022 5 O -0.319 6.319 6 C -0.021 4.021 7 C 0.281 3.719 8 O -0.447 6.447 9 N -0.277 5.277 10 C -0.093 4.093 11 C -0.110 4.110 12 C -0.263 4.263 13 C -0.114 4.114 14 C -0.248 4.248 15 C 0.060 3.940 16 C -0.570 4.570 17 H 0.102 0.898 18 C -0.210 4.210 19 N -0.436 5.436 20 Si 0.933 3.067 21 H -0.201 1.201 22 H -0.196 1.196 23 H -0.174 1.174 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.679 -14.212 -0.091 16.653 hybrid contribution -1.036 0.321 -0.956 1.446 sum -9.715 -13.891 -1.047 16.983 Atomic orbital electron populations 1.21773 0.95167 1.02331 1.01834 1.21417 0.96458 0.94366 1.03061 1.21571 0.93098 0.98566 1.02516 1.22840 0.95614 0.81910 1.01834 1.87968 1.19363 1.28782 1.95789 1.22171 0.83529 0.91191 1.05237 1.21209 0.82091 0.92315 0.76327 1.90640 1.50520 1.53284 1.50225 1.42703 1.07196 1.06913 1.70931 1.17758 1.01555 0.83661 1.06357 1.20878 0.98409 0.93262 0.98474 1.20597 1.00532 0.95275 1.09866 1.20666 0.94665 0.98612 0.97440 1.20803 1.02999 0.92985 1.07986 1.17821 0.92624 0.93389 0.90126 1.20537 0.96260 1.03273 1.36882 0.89830 1.28361 0.96351 0.95302 1.01019 1.70576 1.40670 1.20501 1.11903 0.83009 0.74942 0.76383 0.72377 1.20125 1.19570 1.17355 0.91418 0.92962 0.92868 0.90838 0.90964 0.92309 0.92134 0.91337 0.91608 0.87108 0.87580 0.74807 0.87530 0.86594 0.86530 0.88528 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.51 5.93 30.59 0.18 -1.33 16 3 C -0.12 -2.26 5.58 30.59 0.17 -2.09 16 4 C 0.05 1.06 5.94 71.98 0.43 1.49 16 5 O -0.40 -11.98 9.88 -129.94 -1.28 -13.26 16 6 C 0.06 1.55 6.42 71.23 0.46 2.00 16 7 C 0.49 19.23 7.75 87.65 0.68 19.91 16 8 O -0.57 -27.56 13.91 16.01 0.22 -27.34 16 9 N -0.63 -25.66 4.90 -302.28 -1.48 -27.14 16 10 C 0.00 0.05 6.33 38.88 0.25 0.30 16 11 C -0.09 -4.46 8.69 22.36 0.19 -4.27 16 12 C -0.24 -11.41 10.04 22.42 0.22 -11.18 16 13 C -0.10 -4.49 9.97 22.01 0.22 -4.27 16 14 C -0.23 -11.78 7.87 22.47 0.18 -11.60 16 15 C 0.06 3.36 5.32 -21.18 -0.11 3.25 16 16 C -0.54 -26.80 8.35 23.38 0.20 -26.60 16 17 H 0.08 3.85 7.39 -2.91 -0.02 3.83 16 18 C 0.01 0.33 4.95 85.26 0.42 0.75 16 19 N -0.81 -41.82 12.32 21.83 0.27 -41.56 16 20 Si 1.12 40.15 30.00 68.60 2.06 42.21 16 21 H -0.28 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.25 -7.89 7.11 99.48 0.71 -7.19 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.41 14.41 7.95 -92.71 -0.74 13.67 16 36 H 0.11 5.33 6.20 -2.91 -0.02 5.31 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.10 5.14 6.45 -2.91 -0.02 5.12 16 40 H 0.29 15.38 6.62 -92.70 -0.61 14.76 16 Total: -1.00 -66.89 335.67 4.43 -62.46 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 0.45 Total: 39.47 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 4.20 Total: -34.85 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.21 Total: -68.69 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.06 Total: -40.60 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.06 Total: 42.21 kcal Total: -66.89 4.43 -62.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339172474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.603 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds