Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00393 * 2 1 4 4 C 1.52997 * 109.47412 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46946 * 59.99691 * 4 3 2 6 6 C 1.53001 * 109.47327 * 300.00131 * 4 3 2 7 7 N 1.46491 * 109.47322 * 179.97438 * 4 3 2 8 8 C 1.34775 * 120.00301 * 179.97438 * 7 4 3 9 9 O 1.21585 * 119.99874 * 0.02562 * 8 7 4 10 10 C 1.47644 * 120.00056 * 179.97438 * 8 7 4 11 11 C 1.40019 * 119.89372 * 179.97438 * 10 8 7 12 12 C 1.36320 * 120.10443 * 180.27875 * 11 10 8 13 13 C 1.40883 * 119.89093 * 359.49674 * 12 11 10 14 14 C 1.41107 * 120.10176 * 180.22954 * 13 12 11 15 15 H 1.08002 * 120.00312 * 204.80837 * 14 13 12 16 16 C 1.40229 * 120.00101 * 24.81140 * 14 13 12 17 17 N 1.30645 * 119.99784 * 17.72871 * 16 14 13 18 18 Si 1.86801 * 120.00102 * 197.73117 * 16 14 13 19 19 H 1.48498 * 109.47059 * 89.99410 * 18 16 14 20 20 H 1.48495 * 109.46824 * 209.99573 * 18 16 14 21 21 H 1.48505 * 109.46843 * 329.99538 * 18 16 14 22 22 C 1.40888 * 119.79327 * 0.50241 * 13 12 11 23 23 C 1.36308 * 119.89233 * 359.75319 * 22 13 12 24 24 H 1.09007 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47357 * 300.00377 * 1 2 3 26 26 H 1.09003 * 109.46720 * 60.00407 * 1 2 3 27 27 H 1.08996 * 109.46872 * 59.99393 * 3 2 1 28 28 H 1.09003 * 109.46567 * 299.99553 * 3 2 1 29 29 H 1.08998 * 109.47018 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.47327 * 300.00351 * 5 4 3 31 31 H 1.09006 * 109.46817 * 60.00472 * 5 4 3 32 32 H 1.08996 * 109.46812 * 300.00188 * 6 4 3 33 33 H 1.09002 * 109.46794 * 59.99379 * 6 4 3 34 34 H 1.08998 * 109.47382 * 179.97438 * 6 4 3 35 35 H 0.97003 * 120.00402 * 359.97438 * 7 4 3 36 36 H 1.08002 * 119.94691 * 0.02562 * 11 10 8 37 37 H 1.08000 * 120.04739 * 179.74853 * 12 11 10 38 38 H 0.97002 * 119.99718 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.05175 * 179.72566 * 22 13 12 40 40 H 1.08006 * 119.94835 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4250 -1.2483 6 6 3.9864 0.4255 1.2502 7 7 4.1314 2.5228 0.0000 8 6 5.4717 2.6637 0.0010 9 8 6.1864 1.6800 0.0018 10 6 6.0723 4.0125 -0.0002 11 6 7.4651 4.1562 0.0013 12 6 8.0241 5.3995 0.0059 13 6 7.1981 6.5408 -0.0015 14 6 7.7721 7.8298 -0.0017 15 1 7.2140 8.6695 0.3856 16 6 9.0671 8.0207 -0.5046 17 7 9.6083 7.1155 -1.2756 18 14 10.0182 9.5692 -0.0723 19 1 10.8017 9.3387 1.1680 20 1 10.9409 9.9101 -1.1846 21 1 9.0678 10.6897 0.1436 22 6 5.7972 6.3910 -0.0030 23 6 5.2474 5.1437 -0.0024 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8463 0.8899 28 1 1.6887 1.8462 -0.8901 29 1 5.0739 0.3385 -1.2476 30 1 3.5440 -0.5707 -1.2483 31 1 3.6661 0.9658 -2.1385 32 1 3.6644 0.9665 2.1399 33 1 3.5430 -0.5702 1.2502 34 1 5.0730 0.3390 1.2504 35 1 3.5613 3.3076 -0.0011 36 1 8.0974 3.2807 0.0029 37 1 9.0985 5.5093 0.0112 38 1 10.5043 7.2473 -1.6232 39 1 5.1600 7.2630 -0.0043 40 1 4.1735 5.0278 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340124340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = -73.635698 kcal Electronic energy + Delta-G solvation = -21174.986807 eV Core-core repulsion = 17954.175382 eV Total energy + Delta-G solvation = -3220.811425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72067 -38.16220 -37.16003 -35.20934 -33.89638 -31.56859 -29.92764 -29.27151 -27.54671 -26.98247 -25.97943 -25.52543 -22.26438 -21.10499 -20.03028 -19.06301 -17.52044 -17.19026 -16.61102 -15.97991 -15.50351 -15.02547 -14.75404 -14.21780 -14.03125 -13.87453 -13.41313 -13.28300 -13.00576 -12.76289 -12.21253 -12.09580 -11.97186 -11.76980 -11.67173 -11.52526 -11.33578 -11.24478 -11.02128 -10.88717 -10.64065 -10.60508 -10.02719 -9.85561 -9.53345 -9.33935 -8.78738 -8.59627 -7.69797 -7.56586 -7.01756 -4.60191 2.24364 2.91807 2.96127 2.98574 3.03592 3.25929 3.74526 3.88674 4.13561 4.57261 4.78059 4.90096 5.12616 5.14054 5.16494 5.42994 5.43432 5.56870 5.65702 5.83396 5.97064 6.04496 6.13655 6.17987 6.19199 6.29594 6.59998 6.63325 6.80711 6.84397 6.90074 7.05984 7.07851 7.12707 7.43974 7.61764 7.79394 7.88189 8.05631 8.26925 8.43541 8.63283 8.75819 9.11165 9.90197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.003332 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.514807 B = 8400.944008 C = 8766.802722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.062 3.938 4 C 0.179 3.821 5 C -0.157 4.157 6 C -0.157 4.157 7 N -0.736 5.736 8 C 0.578 3.422 9 O -0.565 6.565 10 C -0.283 4.283 11 C -0.035 4.035 12 C -0.183 4.183 13 C 0.128 3.872 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.769 5.769 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.235 4.235 23 C -0.050 4.050 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.393 0.607 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.096 0.904 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 -6.081 1.572 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.016 4.016 4 C 0.093 3.907 5 C -0.215 4.215 6 C -0.215 4.215 7 N -0.391 5.391 8 C 0.373 3.627 9 O -0.446 6.446 10 C -0.287 4.287 11 C -0.055 4.055 12 C -0.202 4.202 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.392 5.392 18 Si 0.737 3.263 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.255 4.255 23 C -0.069 4.069 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.228 0.772 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.981 -7.017 1.414 13.108 hybrid contribution -0.206 1.403 0.030 1.418 sum -11.188 -5.614 1.443 12.600 Atomic orbital electron populations 1.22748 0.81072 1.02712 0.99972 1.87860 1.19451 1.27123 1.95395 1.22659 0.93386 0.85040 1.00481 1.19992 0.89679 0.83940 0.97072 1.22147 1.03961 0.99695 0.95698 1.22143 1.03952 0.99701 0.95669 1.45945 1.07522 1.06964 1.78648 1.18477 0.80448 0.89810 0.73973 1.90579 1.61158 1.40632 1.52247 1.18926 0.94194 0.90216 1.25407 1.20481 0.92813 0.96935 0.95224 1.21020 1.00028 0.91075 1.08088 1.17779 0.90961 0.93415 0.85337 1.19841 0.98487 0.94998 1.33831 0.89766 1.26107 0.97642 0.98569 0.92475 1.69750 1.15291 1.33922 1.20254 0.86208 0.79578 0.81163 0.79305 1.18912 1.20011 1.18330 1.20660 0.95030 0.95335 1.14465 1.20354 0.96302 0.92932 0.97316 0.89579 0.94108 0.94093 0.92859 0.92840 0.90083 0.91759 0.93269 0.93293 0.91755 0.90086 0.77181 0.88139 0.86179 0.90158 0.88552 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.47 9.35 -35.23 -0.33 -4.80 16 3 C 0.06 0.73 4.92 37.16 0.18 0.91 16 4 C 0.18 2.65 0.89 -131.82 -0.12 2.53 16 5 C -0.16 -2.41 8.25 37.16 0.31 -2.10 16 6 C -0.16 -2.38 8.26 37.16 0.31 -2.07 16 7 N -0.74 -12.12 5.05 -48.60 -0.25 -12.36 16 8 C 0.58 12.02 7.18 -12.42 -0.09 11.93 16 9 O -0.56 -12.99 12.53 5.29 0.07 -12.92 16 10 C -0.28 -6.39 5.89 -104.73 -0.62 -7.01 16 11 C -0.04 -0.86 9.52 -39.61 -0.38 -1.23 16 12 C -0.18 -4.66 8.63 -39.27 -0.34 -5.00 16 13 C 0.13 3.25 5.57 -106.81 -0.60 2.66 16 14 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 16 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 17 N -0.77 -18.81 10.96 55.56 0.61 -18.20 16 18 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 C -0.24 -5.40 9.73 -39.27 -0.38 -5.79 16 23 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 30 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 34 H 0.08 1.45 6.16 -51.93 -0.32 1.13 16 35 H 0.39 5.63 6.47 -40.82 -0.26 5.37 16 36 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 37 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 38 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 39 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 40 H 0.09 1.51 6.37 -52.48 -0.33 1.17 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -28.05 327.91 -7.10 -35.15 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.69 Total: 10.79 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.41 Total: -14.94 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.36 Total: -30.56 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.26 Total: -17.72 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.05 -7.10 -35.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340124340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.489 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds