Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00393 * 2 1 4 4 C 1.52997 * 109.47412 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46946 * 59.99691 * 4 3 2 6 6 C 1.53001 * 109.47327 * 300.00131 * 4 3 2 7 7 N 1.46491 * 109.47322 * 179.97438 * 4 3 2 8 8 C 1.34775 * 120.00301 * 179.97438 * 7 4 3 9 9 O 1.21585 * 119.99874 * 0.02562 * 8 7 4 10 10 C 1.47644 * 120.00056 * 179.97438 * 8 7 4 11 11 C 1.40019 * 119.89372 * 179.97438 * 10 8 7 12 12 C 1.36320 * 120.10443 * 180.27875 * 11 10 8 13 13 C 1.40883 * 119.89093 * 359.49674 * 12 11 10 14 14 C 1.41107 * 120.10176 * 180.22954 * 13 12 11 15 15 H 1.08002 * 120.00312 * 204.80837 * 14 13 12 16 16 C 1.40229 * 120.00101 * 24.81140 * 14 13 12 17 17 N 1.30645 * 119.99784 * 17.72871 * 16 14 13 18 18 Si 1.86801 * 120.00102 * 197.73117 * 16 14 13 19 19 H 1.48498 * 109.47059 * 89.99410 * 18 16 14 20 20 H 1.48495 * 109.46824 * 209.99573 * 18 16 14 21 21 H 1.48505 * 109.46843 * 329.99538 * 18 16 14 22 22 C 1.40888 * 119.79327 * 0.50241 * 13 12 11 23 23 C 1.36308 * 119.89233 * 359.75319 * 22 13 12 24 24 H 1.09007 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47357 * 300.00377 * 1 2 3 26 26 H 1.09003 * 109.46720 * 60.00407 * 1 2 3 27 27 H 1.08996 * 109.46872 * 59.99393 * 3 2 1 28 28 H 1.09003 * 109.46567 * 299.99553 * 3 2 1 29 29 H 1.08998 * 109.47018 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.47327 * 300.00351 * 5 4 3 31 31 H 1.09006 * 109.46817 * 60.00472 * 5 4 3 32 32 H 1.08996 * 109.46812 * 300.00188 * 6 4 3 33 33 H 1.09002 * 109.46794 * 59.99379 * 6 4 3 34 34 H 1.08998 * 109.47382 * 179.97438 * 6 4 3 35 35 H 0.97003 * 120.00402 * 359.97438 * 7 4 3 36 36 H 1.08002 * 119.94691 * 0.02562 * 11 10 8 37 37 H 1.08000 * 120.04739 * 179.74853 * 12 11 10 38 38 H 0.97002 * 119.99718 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.05175 * 179.72566 * 22 13 12 40 40 H 1.08006 * 119.94835 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4250 -1.2483 6 6 3.9864 0.4255 1.2502 7 7 4.1314 2.5228 0.0000 8 6 5.4717 2.6637 0.0010 9 8 6.1864 1.6800 0.0018 10 6 6.0723 4.0125 -0.0002 11 6 7.4651 4.1562 0.0013 12 6 8.0241 5.3995 0.0059 13 6 7.1981 6.5408 -0.0015 14 6 7.7721 7.8298 -0.0017 15 1 7.2140 8.6695 0.3856 16 6 9.0671 8.0207 -0.5046 17 7 9.6083 7.1155 -1.2756 18 14 10.0182 9.5692 -0.0723 19 1 10.8017 9.3387 1.1680 20 1 10.9409 9.9101 -1.1846 21 1 9.0678 10.6897 0.1436 22 6 5.7972 6.3910 -0.0030 23 6 5.2474 5.1437 -0.0024 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8463 0.8899 28 1 1.6887 1.8462 -0.8901 29 1 5.0739 0.3385 -1.2476 30 1 3.5440 -0.5707 -1.2483 31 1 3.6661 0.9658 -2.1385 32 1 3.6644 0.9665 2.1399 33 1 3.5430 -0.5702 1.2502 34 1 5.0730 0.3390 1.2504 35 1 3.5613 3.3076 -0.0011 36 1 8.0974 3.2807 0.0029 37 1 9.0985 5.5093 0.0112 38 1 10.5043 7.2473 -1.6232 39 1 5.1600 7.2630 -0.0043 40 1 4.1735 5.0278 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340124340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = -90.385150 kcal Electronic energy + Delta-G solvation = -21175.713117 eV Core-core repulsion = 17954.175382 eV Total energy + Delta-G solvation = -3221.537736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18579 -39.43724 -38.66773 -36.54138 -35.68340 -33.07550 -31.73329 -30.99817 -28.37297 -28.21234 -27.66830 -26.46617 -23.93523 -22.87262 -21.58473 -20.51017 -19.31534 -18.71892 -17.57271 -17.13559 -16.78618 -16.32457 -16.09230 -15.70971 -15.70064 -15.22348 -14.99103 -14.54517 -14.44216 -14.20203 -13.95530 -13.65555 -13.25181 -13.06804 -13.02036 -12.81896 -12.73094 -12.54491 -12.44258 -12.34326 -12.14461 -11.77207 -11.71164 -11.33559 -11.12181 -10.62875 -10.43723 -10.04317 -9.55113 -9.40069 -8.78102 -6.47314 0.47074 1.16835 1.38126 1.43806 1.53311 2.10551 2.13879 2.19284 2.81326 3.10064 3.70830 3.75569 3.89432 4.09199 4.28334 4.35326 4.42781 4.43327 4.53903 4.60551 4.65388 4.83538 4.83846 4.91147 4.93131 4.96018 4.98893 5.03237 5.21431 5.27600 5.36078 5.37249 5.60476 5.68513 5.80468 5.98430 6.03448 6.19402 6.21861 6.57574 6.77963 6.78388 6.91464 7.52052 8.16995 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044327 B = 0.003332 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.514807 B = 8400.944008 C = 8766.802722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.070 3.930 4 C 0.173 3.827 5 C -0.152 4.152 6 C -0.151 4.151 7 N -0.717 5.717 8 C 0.578 3.422 9 O -0.592 6.592 10 C -0.292 4.292 11 C -0.049 4.049 12 C -0.204 4.204 13 C 0.101 3.899 14 C -0.473 4.473 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.805 5.805 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.251 1.251 22 C -0.246 4.246 23 C -0.038 4.038 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.407 0.593 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.295 0.705 39 H 0.116 0.884 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 -5.359 1.817 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.007 4.007 4 C 0.088 3.912 5 C -0.210 4.210 6 C -0.209 4.209 7 N -0.372 5.372 8 C 0.371 3.629 9 O -0.475 6.475 10 C -0.296 4.296 11 C -0.069 4.069 12 C -0.223 4.223 13 C 0.097 3.903 14 C -0.501 4.501 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.428 5.428 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.174 1.174 22 C -0.265 4.265 23 C -0.057 4.057 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.618 -6.301 1.657 15.096 hybrid contribution 0.504 1.028 -0.060 1.147 sum -13.114 -5.272 1.597 14.224 Atomic orbital electron populations 1.22959 0.79081 1.03980 1.01011 1.87823 1.21546 1.26954 1.95614 1.22511 0.90561 0.85639 1.02024 1.20161 0.92143 0.82536 0.96404 1.22073 1.01762 1.00791 0.96395 1.22065 1.01781 1.00767 0.96334 1.45717 1.06041 1.08591 1.76803 1.18261 0.81872 0.88623 0.74099 1.90584 1.62335 1.41192 1.53417 1.19219 0.93697 0.92041 1.24643 1.20547 0.94181 0.96236 0.95931 1.20940 0.99421 0.91938 1.10049 1.18143 0.92396 0.93628 0.86091 1.20151 0.99864 0.95114 1.34931 0.89023 1.27016 0.98064 1.01815 0.91640 1.69806 1.15999 1.35942 1.21073 0.85093 0.78062 0.77016 0.78990 1.18711 1.19212 1.17405 1.20943 0.94299 0.96926 1.14360 1.20709 0.98490 0.91463 0.95034 0.88340 0.93006 0.93062 0.91239 0.91357 0.93412 0.90462 0.92659 0.92506 0.90490 0.93371 0.75564 0.89112 0.87969 0.89432 0.86609 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -8.10 9.35 -148.98 -1.39 -9.49 16 3 C 0.07 1.39 4.92 71.98 0.35 1.74 16 4 C 0.17 4.75 0.89 3.61 0.00 4.75 16 5 C -0.15 -4.49 8.25 71.98 0.59 -3.90 16 6 C -0.15 -4.41 8.26 71.98 0.59 -3.82 16 7 N -0.72 -22.06 5.05 -425.95 -2.15 -24.22 16 8 C 0.58 23.79 7.18 86.73 0.62 24.42 16 9 O -0.59 -27.82 12.53 -3.98 -0.05 -27.87 16 10 C -0.29 -13.13 5.89 -19.93 -0.12 -13.25 16 11 C -0.05 -2.51 9.52 22.25 0.21 -2.30 16 12 C -0.20 -10.87 8.63 22.47 0.19 -10.68 16 13 C 0.10 5.20 5.57 -21.28 -0.12 5.08 16 14 C -0.47 -23.77 9.04 23.46 0.21 -23.56 16 15 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 16 C 0.03 1.57 5.14 85.35 0.44 2.01 16 17 N -0.80 -40.48 10.96 21.87 0.24 -40.24 16 18 Si 0.99 35.49 29.60 68.60 2.03 37.52 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 22 C -0.25 -11.06 9.73 22.47 0.22 -10.85 16 23 C -0.04 -1.54 9.47 22.25 0.21 -1.33 16 24 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.74 6.16 -2.39 -0.01 1.72 16 30 H 0.08 2.05 7.68 -2.39 -0.02 2.03 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 2.02 7.68 -2.39 -0.02 2.00 16 34 H 0.05 1.73 6.16 -2.39 -0.01 1.71 16 35 H 0.41 10.16 6.47 -92.71 -0.60 9.56 16 36 H 0.09 4.64 7.63 -2.91 -0.02 4.61 16 37 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 38 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 39 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 40 H 0.14 4.06 6.37 -2.91 -0.02 4.04 16 Total: -1.00 -62.91 327.91 3.79 -59.12 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.44 Total: 35.29 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.67 Total: -30.11 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -1.91 Total: -64.46 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.44 Total: -37.36 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -62.91 3.79 -59.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340124340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.261 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds