Wall clock time and date at job start Mon Mar 30 2020 01:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.53003 * 109.46917 * 60.00212 * 3 2 1 5 5 C 1.52992 * 109.47294 * 300.00051 * 3 2 1 6 6 C 1.53001 * 109.47162 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.47046 * 64.99956 * 6 3 2 8 8 C 1.34771 * 120.00394 * 179.97438 * 7 6 3 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 180.02562 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.09003 * 109.46535 * 59.99641 * 1 2 3 25 25 H 1.08991 * 109.46966 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47135 * 300.00295 * 1 2 3 27 27 H 1.09002 * 109.46798 * 179.97438 * 4 3 2 28 28 H 1.08993 * 109.47041 * 299.99618 * 4 3 2 29 29 H 1.08997 * 109.47215 * 59.99799 * 4 3 2 30 30 H 1.09004 * 109.47039 * 299.99597 * 5 3 2 31 31 H 1.08993 * 109.47257 * 60.00019 * 5 3 2 32 32 H 1.09009 * 109.47328 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47174 * 305.00365 * 6 3 2 34 34 H 1.08997 * 109.47509 * 185.00329 * 6 3 2 35 35 H 0.97008 * 119.99606 * 0.02562 * 7 6 3 36 36 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 37 37 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 38 38 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 40 40 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1846 0.0006 7 7 3.9767 0.5639 -1.2509 8 6 5.2895 0.3559 -1.4738 9 8 6.1077 0.6831 -0.6360 10 6 5.7342 -0.2691 -2.7353 11 6 4.7906 -0.6400 -3.7009 12 6 5.1959 -1.2222 -4.8649 13 6 6.5678 -1.4402 -5.1004 14 6 6.9928 -2.0367 -6.3065 15 1 6.3209 -2.6775 -6.8582 16 6 8.2875 -1.7974 -6.7888 17 7 8.9741 -0.7802 -6.3406 18 14 9.0309 -2.9330 -8.0723 19 1 8.7971 -2.3698 -9.4264 20 1 10.4912 -3.0602 -7.8345 21 1 8.3952 -4.2716 -7.9765 22 6 7.5139 -1.0604 -4.1280 23 6 7.0986 -0.4837 -2.9648 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.0025 3.0603 1.2495 28 1 0.4723 2.1508 1.2493 29 1 1.8804 1.5237 2.1392 30 1 1.8805 1.5238 -2.1392 31 1 0.4723 2.1508 -1.2492 32 1 2.0026 3.0604 -1.2494 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0903 35 1 3.3239 0.3033 -1.9195 36 1 3.7394 -0.4681 -3.5216 37 1 4.4670 -1.5117 -5.6074 38 1 9.8698 -0.6149 -6.6739 39 1 8.5667 -1.2252 -4.3043 40 1 7.8231 -0.1927 -2.2186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340208770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:30 Heat of formation + Delta-G solvation = -93.540717 kcal Electronic energy + Delta-G solvation = -21117.796047 eV Core-core repulsion = 17896.121475 eV Total energy + Delta-G solvation = -3221.674571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00426 -39.87685 -38.79818 -35.84399 -35.67140 -33.35128 -31.92519 -31.31558 -28.68608 -28.36472 -27.69882 -26.24564 -23.64722 -22.67615 -21.33147 -20.96387 -19.36605 -18.70949 -17.59723 -17.11743 -16.93835 -16.25940 -16.01296 -15.84596 -15.73447 -15.26082 -15.04315 -14.46458 -14.21285 -14.07965 -13.95503 -13.71720 -13.48856 -13.24083 -13.15445 -12.86671 -12.80240 -12.64423 -12.49100 -12.34361 -12.24823 -11.79219 -11.53052 -11.35592 -11.10844 -10.74863 -10.51173 -10.06187 -9.56940 -9.40640 -8.78677 -6.47830 0.44604 1.15223 1.38149 1.42928 1.55562 2.11508 2.18540 2.39113 2.75878 2.81632 3.64503 3.69748 3.88051 3.96918 4.26477 4.32474 4.41432 4.47721 4.54216 4.57573 4.65824 4.69545 4.75628 4.86283 4.91619 4.97229 5.00329 5.02125 5.18066 5.20710 5.26011 5.31562 5.55623 5.59470 5.78781 5.95983 6.01961 6.20298 6.29512 6.55989 6.72072 6.76904 6.89622 7.44504 8.16691 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036314 B = 0.003440 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.869167 B = 8138.348126 C = 8615.600441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.402 6.402 3 C 0.103 3.897 4 C -0.171 4.171 5 C -0.179 4.179 6 C 0.134 3.866 7 N -0.717 5.717 8 C 0.569 3.431 9 O -0.610 6.610 10 C -0.294 4.294 11 C -0.037 4.037 12 C -0.246 4.246 13 C 0.101 3.899 14 C -0.472 4.472 15 H 0.093 0.907 16 C 0.034 3.966 17 N -0.803 5.803 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.254 1.254 22 C -0.202 4.202 23 C -0.050 4.050 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.408 0.592 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.295 0.705 39 H 0.105 0.895 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 3.505 6.258 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.322 6.322 3 C 0.064 3.936 4 C -0.229 4.229 5 C -0.236 4.236 6 C 0.010 3.990 7 N -0.369 5.369 8 C 0.362 3.638 9 O -0.495 6.495 10 C -0.299 4.299 11 C -0.056 4.056 12 C -0.265 4.265 13 C 0.098 3.902 14 C -0.499 4.499 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.427 5.427 18 Si 0.809 3.191 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.222 4.222 23 C -0.069 4.069 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.221 3.727 6.839 16.214 hybrid contribution 0.360 -0.216 -0.681 0.800 sum -13.861 3.511 6.158 15.569 Atomic orbital electron populations 1.22994 0.79822 1.03593 1.01335 1.88010 1.21446 1.27480 1.95277 1.21726 0.90904 0.84093 0.96887 1.22325 1.03177 1.01083 0.96325 1.22429 1.03154 1.01136 0.96919 1.21381 0.92834 0.98322 0.86448 1.45698 1.06656 1.63568 1.21011 1.18448 0.82224 0.76885 0.86236 1.90610 1.54456 1.55718 1.48669 1.19182 0.94253 1.18842 0.97582 1.20654 0.97644 0.94882 0.92411 1.20935 0.95460 1.10476 0.99615 1.18142 0.92141 0.87553 0.92342 1.20157 0.98931 1.25268 1.05570 0.88939 1.27031 0.96588 0.95474 0.99420 1.69804 1.11938 1.23456 1.37480 0.85079 0.77802 0.78904 0.77342 1.18234 1.19158 1.17710 1.20932 0.99596 1.07643 0.93985 1.20545 0.94584 0.95834 0.95941 0.92630 0.89167 0.92371 0.90080 0.89812 0.91860 0.92523 0.89776 0.90500 0.92740 0.90302 0.75440 0.85368 0.86546 0.89351 0.87755 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.21 113.37 1.16 1.43 16 2 O -0.40 -9.18 10.29 -148.98 -1.53 -10.71 16 3 C 0.10 2.11 0.80 -10.79 -0.01 2.10 16 4 C -0.17 -2.56 8.25 71.98 0.59 -1.97 16 5 C -0.18 -3.10 8.02 71.98 0.58 -2.52 16 6 C 0.13 3.79 4.84 86.38 0.42 4.21 16 7 N -0.72 -24.27 5.14 -466.15 -2.40 -26.66 16 8 C 0.57 25.18 7.76 86.73 0.67 25.85 16 9 O -0.61 -30.78 16.32 -4.01 -0.07 -30.85 16 10 C -0.29 -13.97 5.89 -19.93 -0.12 -14.08 16 11 C -0.04 -1.59 9.47 22.25 0.21 -1.38 16 12 C -0.25 -11.44 9.73 22.47 0.22 -11.22 16 13 C 0.10 5.34 5.57 -21.28 -0.12 5.22 16 14 C -0.47 -23.98 9.04 23.46 0.21 -23.76 16 15 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 16 C 0.03 1.60 5.13 85.35 0.44 2.04 16 17 N -0.80 -40.53 10.97 21.87 0.24 -40.29 16 18 Si 0.99 35.60 29.60 68.60 2.03 37.63 16 19 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 22 C -0.20 -10.96 8.63 22.47 0.19 -10.76 16 23 C -0.05 -2.59 9.52 22.25 0.21 -2.38 16 24 H 0.06 0.69 6.42 -2.39 -0.02 0.67 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 0.67 6.42 -2.39 -0.02 0.66 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 0.93 6.54 -2.39 -0.02 0.91 16 29 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.11 6.58 -2.39 -0.02 1.10 16 31 H 0.08 1.09 6.54 -2.39 -0.02 1.07 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 12.23 4.99 -92.70 -0.46 11.77 16 36 H 0.13 4.35 6.37 -2.91 -0.02 4.33 16 37 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.30 13.34 8.29 -92.71 -0.77 12.57 16 39 H 0.10 5.85 6.17 -2.91 -0.02 5.83 16 40 H 0.09 4.80 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -65.34 327.30 3.53 -61.82 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.59 Total: 36.30 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 4.66 Total: -27.24 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -2.16 Total: -66.95 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.60 Total: -41.56 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -65.34 3.53 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340208770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.725 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds