Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.08994 * 109.47598 * 305.00218 * 3 2 1 5 5 C 1.52997 * 109.46977 * 184.99849 * 3 2 1 6 6 C 1.52998 * 109.47083 * 175.00573 * 5 3 2 7 7 O 1.42900 * 109.47266 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.47193 * 65.00097 * 3 2 1 9 9 C 1.34774 * 120.00139 * 274.99926 * 8 3 2 10 10 O 1.21594 * 119.99782 * 359.97438 * 9 8 3 11 11 C 1.47640 * 120.00212 * 179.97438 * 9 8 3 12 12 C 1.40010 * 119.89464 * 359.72585 * 11 9 8 13 13 C 1.36327 * 120.10601 * 179.71568 * 12 11 9 14 14 C 1.40886 * 119.88759 * 0.57740 * 13 12 11 15 15 C 1.41112 * 120.10129 * 179.67214 * 14 13 12 16 16 H 1.07997 * 119.99902 * 204.64772 * 15 14 13 17 17 C 1.40224 * 119.99928 * 24.64993 * 15 14 13 18 18 N 1.30651 * 119.99803 * 17.87460 * 17 15 14 19 19 Si 1.86797 * 120.00294 * 197.87664 * 17 15 14 20 20 H 1.48505 * 109.46883 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47690 * 119.99847 * 19 17 15 22 22 H 1.48508 * 109.46953 * 240.00237 * 19 17 15 23 23 C 1.40890 * 119.79788 * 359.69866 * 14 13 12 24 24 C 1.36321 * 119.88808 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47327 * 59.99747 * 1 2 3 27 27 H 1.09003 * 109.47068 * 300.00094 * 1 2 3 28 28 H 1.08998 * 109.46711 * 120.00165 * 2 1 3 29 29 H 1.08990 * 109.46968 * 240.00221 * 2 1 3 30 30 H 1.09003 * 109.47301 * 294.99825 * 5 3 2 31 31 H 1.08998 * 109.47223 * 55.00346 * 5 3 2 32 32 H 1.09006 * 109.46940 * 299.99903 * 6 5 3 33 33 H 1.08996 * 109.47978 * 60.00044 * 6 5 3 34 34 H 0.96700 * 114.00419 * 179.97438 * 7 6 5 35 35 H 0.97003 * 120.00449 * 94.99463 * 8 3 2 36 36 H 1.07998 * 119.94520 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05464 * 180.24966 * 13 12 11 38 38 H 0.97000 * 119.99550 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.05777 * 179.97438 * 23 14 13 40 40 H 1.08004 * 119.94216 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 6 4.0645 2.8849 -0.2509 7 8 5.4886 2.8866 -0.3689 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6644 1.3670 10 8 -0.3412 2.6327 0.4318 11 6 0.0444 3.3240 2.6288 12 6 0.9380 3.3543 3.7062 13 6 0.5838 3.9672 4.8713 14 6 -0.6883 4.5601 4.9941 15 6 -1.0622 5.1897 6.2004 16 1 -2.1066 5.2867 6.4578 17 6 -0.0777 5.6894 7.0649 18 7 1.1350 5.8952 6.6245 19 14 -0.5000 6.0609 8.8462 20 1 -1.9299 5.7446 9.0922 21 1 0.3510 5.2346 9.7395 22 1 -0.2571 7.4997 9.1228 23 6 -1.5862 4.5221 3.9091 24 6 -1.2209 3.9118 2.7462 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 4.0029 0.9836 0.7597 31 1 3.8571 0.8800 -1.0113 32 1 3.6264 3.3458 -1.1363 33 1 3.7724 3.4493 0.6346 34 1 5.8754 3.7690 -0.4527 35 1 2.2719 2.1231 1.9979 36 1 1.9112 2.8957 3.6125 37 1 1.2752 3.9936 5.7005 38 1 1.8161 6.2405 7.2226 39 1 -2.5626 4.9749 3.9988 40 1 -1.9084 3.8824 1.9137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340270978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -91.759503 kcal Electronic energy + Delta-G solvation = -21257.782487 eV Core-core repulsion = 18036.185154 eV Total energy + Delta-G solvation = -3221.597332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.54385 -37.60316 -36.93002 -35.49774 -33.88844 -32.10015 -30.95370 -29.86492 -29.44532 -26.21093 -25.28945 -22.26066 -21.82173 -21.07439 -20.44623 -19.67753 -17.58631 -17.50780 -16.56169 -16.19223 -15.42157 -15.05001 -14.87030 -14.13566 -14.01035 -13.79458 -13.46756 -13.12028 -12.91428 -12.71435 -12.45482 -12.13138 -11.93436 -11.78277 -11.45614 -11.30539 -11.26571 -11.04931 -10.93159 -10.87338 -10.68300 -10.56541 -10.04874 -10.03542 -9.58120 -9.36603 -8.92689 -8.52648 -7.73898 -7.55881 -7.05595 -4.62012 2.21967 2.89172 2.93939 2.99390 3.01864 3.72592 3.79138 3.86180 4.03167 4.54787 4.94348 4.97375 5.10433 5.33460 5.37181 5.48148 5.56178 5.64577 5.77423 5.86083 5.94050 6.03461 6.07714 6.16436 6.18988 6.30148 6.41841 6.71987 6.75593 6.81130 6.96173 7.07079 7.11960 7.41970 7.50630 7.64085 7.77907 7.84563 8.05573 8.24843 8.38419 8.61587 8.73634 9.09389 9.86470 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.004136 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.019885 B = 6768.210477 C = 7649.538257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.149 3.851 4 H 0.086 0.914 5 C -0.125 4.125 6 C 0.074 3.926 7 O -0.579 6.579 8 N -0.738 5.738 9 C 0.573 3.427 10 O -0.569 6.569 11 C -0.285 4.285 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.912 3.088 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.379 0.621 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -5.174 -6.083 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.044 3.956 4 H 0.104 0.896 5 C -0.163 4.163 6 C -0.004 4.004 7 O -0.384 6.384 8 N -0.391 5.391 9 C 0.368 3.632 10 O -0.451 6.451 11 C -0.290 4.290 12 C -0.082 4.082 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.736 3.264 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.259 4.259 24 C -0.041 4.041 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.226 0.774 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.489 -5.746 -6.641 10.356 hybrid contribution 0.381 0.896 1.156 1.511 sum 5.870 -4.850 -5.484 9.384 Atomic orbital electron populations 1.21796 0.94631 1.00034 1.03690 1.21919 0.97398 0.95970 1.01601 1.20818 0.92430 0.93578 0.88769 0.89623 1.21795 0.94576 0.96318 1.03643 1.22208 0.80421 0.97454 1.00306 1.86424 1.20893 1.34112 1.96981 1.46034 1.17767 1.59551 1.15734 1.18510 0.80200 0.76497 0.88023 1.90642 1.51688 1.61521 1.41273 1.18925 0.98442 1.16993 0.94590 1.20476 0.96201 0.97837 0.93728 1.20975 0.98847 1.02321 0.97618 1.17790 0.91184 0.87157 0.91369 1.19884 0.94702 1.30600 1.01870 0.89688 1.26096 0.94290 0.93069 1.01197 1.69753 1.03364 1.29243 1.37183 0.86180 0.80451 0.78818 0.80962 1.18043 1.19371 1.19661 1.20720 1.01112 1.09880 0.94157 1.20361 0.93925 0.93493 0.96360 0.94139 0.92370 0.91655 0.92054 0.91781 0.90774 0.90114 0.93637 0.92929 0.77400 0.76889 0.89421 0.86254 0.90294 0.88445 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.51 37.16 0.32 -1.85 16 2 C -0.13 -1.66 5.61 -26.73 -0.15 -1.81 16 3 C 0.15 2.02 2.26 -67.93 -0.15 1.86 16 4 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 5 C -0.13 -1.43 5.12 -26.73 -0.14 -1.56 16 6 C 0.07 0.86 6.93 37.16 0.26 1.12 16 7 O -0.58 -6.58 13.66 -35.23 -0.48 -7.06 16 8 N -0.74 -11.72 4.43 -54.81 -0.24 -11.96 16 9 C 0.57 11.52 6.33 -12.42 -0.08 11.44 16 10 O -0.57 -12.57 13.46 5.28 0.07 -12.50 16 11 C -0.29 -6.33 5.89 -104.73 -0.62 -6.95 16 12 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 13 C -0.18 -4.32 8.64 -39.27 -0.34 -4.66 16 14 C 0.13 3.24 5.58 -106.80 -0.60 2.64 16 15 C -0.44 -10.95 9.04 -37.75 -0.34 -11.29 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.35 10.95 55.56 0.61 -17.74 16 19 Si 0.91 17.13 29.60 -169.99 -5.03 12.10 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 24 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 27 H 0.06 1.18 5.65 -51.93 -0.29 0.89 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.66 7.75 -51.93 -0.40 0.25 16 34 H 0.38 2.71 9.12 45.56 0.42 3.13 16 35 H 0.40 5.81 6.60 -40.82 -0.27 5.54 16 36 H 0.09 1.62 6.37 -52.49 -0.33 1.29 16 37 H 0.12 2.94 6.16 -52.49 -0.32 2.61 16 38 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.10 2.25 7.63 -52.48 -0.40 1.85 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -28.17 329.00 -8.10 -36.26 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -4.92 Total: 14.11 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.06 Total: -18.18 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 0.37 Total: -29.70 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.41 Total: -19.56 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.17 -8.10 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340270978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.495 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds