Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.08994 * 109.47598 * 305.00218 * 3 2 1 5 5 C 1.52997 * 109.46977 * 184.99849 * 3 2 1 6 6 C 1.52998 * 109.47083 * 175.00573 * 5 3 2 7 7 O 1.42900 * 109.47266 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.47193 * 65.00097 * 3 2 1 9 9 C 1.34774 * 120.00139 * 274.99926 * 8 3 2 10 10 O 1.21594 * 119.99782 * 359.97438 * 9 8 3 11 11 C 1.47640 * 120.00212 * 179.97438 * 9 8 3 12 12 C 1.40010 * 119.89464 * 359.72585 * 11 9 8 13 13 C 1.36327 * 120.10601 * 179.71568 * 12 11 9 14 14 C 1.40886 * 119.88759 * 0.57740 * 13 12 11 15 15 C 1.41112 * 120.10129 * 179.67214 * 14 13 12 16 16 H 1.07997 * 119.99902 * 204.64772 * 15 14 13 17 17 C 1.40224 * 119.99928 * 24.64993 * 15 14 13 18 18 N 1.30651 * 119.99803 * 17.87460 * 17 15 14 19 19 Si 1.86797 * 120.00294 * 197.87664 * 17 15 14 20 20 H 1.48505 * 109.46883 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47690 * 119.99847 * 19 17 15 22 22 H 1.48508 * 109.46953 * 240.00237 * 19 17 15 23 23 C 1.40890 * 119.79788 * 359.69866 * 14 13 12 24 24 C 1.36321 * 119.88808 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47327 * 59.99747 * 1 2 3 27 27 H 1.09003 * 109.47068 * 300.00094 * 1 2 3 28 28 H 1.08998 * 109.46711 * 120.00165 * 2 1 3 29 29 H 1.08990 * 109.46968 * 240.00221 * 2 1 3 30 30 H 1.09003 * 109.47301 * 294.99825 * 5 3 2 31 31 H 1.08998 * 109.47223 * 55.00346 * 5 3 2 32 32 H 1.09006 * 109.46940 * 299.99903 * 6 5 3 33 33 H 1.08996 * 109.47978 * 60.00044 * 6 5 3 34 34 H 0.96700 * 114.00419 * 179.97438 * 7 6 5 35 35 H 0.97003 * 120.00449 * 94.99463 * 8 3 2 36 36 H 1.07998 * 119.94520 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.05464 * 180.24966 * 13 12 11 38 38 H 0.97000 * 119.99550 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.05777 * 179.97438 * 23 14 13 40 40 H 1.08004 * 119.94216 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 6 4.0645 2.8849 -0.2509 7 8 5.4886 2.8866 -0.3689 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6644 1.3670 10 8 -0.3412 2.6327 0.4318 11 6 0.0444 3.3240 2.6288 12 6 0.9380 3.3543 3.7062 13 6 0.5838 3.9672 4.8713 14 6 -0.6883 4.5601 4.9941 15 6 -1.0622 5.1897 6.2004 16 1 -2.1066 5.2867 6.4578 17 6 -0.0777 5.6894 7.0649 18 7 1.1350 5.8952 6.6245 19 14 -0.5000 6.0609 8.8462 20 1 -1.9299 5.7446 9.0922 21 1 0.3510 5.2346 9.7395 22 1 -0.2571 7.4997 9.1228 23 6 -1.5862 4.5221 3.9091 24 6 -1.2209 3.9118 2.7462 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 4.0029 0.9836 0.7597 31 1 3.8571 0.8800 -1.0113 32 1 3.6264 3.3458 -1.1363 33 1 3.7724 3.4493 0.6346 34 1 5.8754 3.7690 -0.4527 35 1 2.2719 2.1231 1.9979 36 1 1.9112 2.8957 3.6125 37 1 1.2752 3.9936 5.7005 38 1 1.8161 6.2405 7.2226 39 1 -2.5626 4.9749 3.9988 40 1 -1.9084 3.8824 1.9137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340270978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = -109.785070 kcal Electronic energy + Delta-G solvation = -21258.564134 eV Core-core repulsion = 18036.185154 eV Total energy + Delta-G solvation = -3222.378979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03709 -39.17232 -38.12189 -36.71848 -35.65701 -33.51102 -32.08275 -31.50215 -31.24887 -27.83080 -26.54270 -23.89772 -22.84908 -22.77990 -21.75957 -21.22995 -19.35967 -18.63200 -17.97515 -17.52585 -17.01192 -16.33318 -15.96232 -15.74480 -15.50407 -15.08106 -14.94392 -14.55956 -14.34720 -14.16755 -13.88663 -13.61186 -13.50703 -13.22247 -12.85992 -12.74614 -12.60500 -12.45324 -12.33418 -12.05888 -11.93191 -11.77600 -11.68487 -11.36116 -11.11478 -10.92301 -10.57390 -9.91226 -9.56419 -9.39130 -8.79312 -6.47869 0.47191 1.15381 1.38514 1.42137 1.54920 2.15011 2.19873 2.44395 2.81024 3.16544 3.70093 3.97249 3.99834 4.14116 4.28850 4.29842 4.31916 4.41972 4.45723 4.53087 4.65512 4.77468 4.92729 4.98964 5.00075 5.03777 5.06875 5.11677 5.17410 5.26153 5.31666 5.50457 5.58958 5.72021 5.84359 5.96067 6.00266 6.23800 6.54852 6.76415 6.78355 6.83274 6.90056 7.53504 8.16188 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.004136 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.019885 B = 6768.210477 C = 7649.538257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.149 3.851 4 H 0.071 0.929 5 C -0.116 4.116 6 C 0.074 3.926 7 O -0.589 6.589 8 N -0.721 5.721 9 C 0.575 3.425 10 O -0.592 6.592 11 C -0.291 4.291 12 C -0.054 4.054 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.476 4.476 16 H 0.083 0.917 17 C 0.039 3.961 18 N -0.800 5.800 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.260 1.260 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.033 4.033 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.396 0.604 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.296 0.704 39 H 0.102 0.898 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -6.112 -6.042 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.045 3.955 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.004 4.004 7 O -0.397 6.397 8 N -0.374 5.374 9 C 0.369 3.631 10 O -0.475 6.475 11 C -0.296 4.296 12 C -0.073 4.073 13 C -0.218 4.218 14 C 0.098 3.902 15 C -0.504 4.504 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.423 5.423 19 Si 0.806 3.194 20 H -0.181 1.181 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.274 4.274 24 C -0.052 4.052 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.186 -6.689 -6.620 11.841 hybrid contribution -0.088 1.159 1.008 1.539 sum 7.098 -5.529 -5.612 10.604 Atomic orbital electron populations 1.21735 0.96541 1.00379 1.01254 1.21912 0.95503 0.95500 1.03499 1.20973 0.94072 0.93705 0.86753 0.91106 1.21717 0.92420 0.96482 1.04798 1.22155 0.80826 0.97520 0.99885 1.86376 1.20522 1.35917 1.96934 1.45902 1.16228 1.58243 1.16987 1.18211 0.81321 0.76696 0.86906 1.90632 1.52737 1.62453 1.41701 1.19258 0.98109 1.16394 0.95808 1.20723 0.97371 0.96687 0.92550 1.21006 0.98714 1.03613 0.98434 1.18129 0.92045 0.87974 0.92066 1.20126 0.95282 1.32083 1.02878 0.89849 1.26898 0.93825 0.92232 1.05012 1.69768 1.04282 1.29337 1.38935 0.85088 0.80061 0.78916 0.75337 1.18119 1.18418 1.18819 1.20854 1.01463 1.10605 0.94438 1.20510 0.94758 0.93789 0.96187 0.92425 0.93779 0.95043 0.91072 0.88880 0.90063 0.88354 0.93491 0.94068 0.75393 0.75960 0.86055 0.86985 0.89229 0.88024 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.51 71.98 0.61 -3.48 16 2 C -0.13 -2.86 5.61 30.59 0.17 -2.68 16 3 C 0.15 3.71 2.26 44.99 0.10 3.81 16 4 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 5 C -0.12 -2.29 5.12 30.59 0.16 -2.14 16 6 C 0.07 1.56 6.93 71.98 0.50 2.06 16 7 O -0.59 -11.91 13.66 -148.98 -2.03 -13.94 16 8 N -0.72 -21.79 4.43 -445.59 -1.97 -23.77 16 9 C 0.58 22.91 6.33 86.73 0.55 23.46 16 10 O -0.59 -26.24 13.46 -4.01 -0.05 -26.29 16 11 C -0.29 -12.98 5.89 -19.93 -0.12 -13.10 16 12 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 13 C -0.20 -9.75 8.64 22.47 0.19 -9.56 16 14 C 0.10 5.25 5.58 -21.28 -0.12 5.13 16 15 C -0.48 -24.15 9.04 23.46 0.21 -23.94 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 17 C 0.04 1.82 5.14 85.35 0.44 2.25 16 18 N -0.80 -38.14 10.95 21.87 0.24 -37.90 16 19 Si 0.99 34.79 29.60 68.60 2.03 36.82 16 20 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 22 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 23 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 24 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.37 7.84 -2.38 -0.02 1.35 16 27 H 0.03 1.11 5.65 -2.39 -0.01 1.10 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.04 0.95 7.75 -2.39 -0.02 0.93 16 34 H 0.40 4.78 9.12 -74.06 -0.68 4.10 16 35 H 0.40 10.96 6.60 -92.71 -0.61 10.34 16 36 H 0.12 4.28 6.37 -2.91 -0.02 4.26 16 37 H 0.11 5.60 6.16 -2.91 -0.02 5.59 16 38 H 0.30 12.51 8.29 -92.71 -0.77 11.74 16 39 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 40 H 0.10 4.74 7.63 -2.91 -0.02 4.71 16 Total: -1.00 -61.48 329.00 1.32 -60.16 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.23 Total: 39.02 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 3.34 Total: -34.08 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -1.73 Total: -61.67 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -2.09 Total: -40.24 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Total: -61.48 1.32 -60.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340270978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.630 kcal (2) G-P(sol) polarization free energy of solvation -61.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds